RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 SSC5DA1L4H1 1573 aa25.35■■□□□ 1.65
VTI1B-205ENST00000555543 RASGRF1Q13972 1273 aa25.35■■□□□ 1.65
VTI1B-205ENST00000555543 SPDYE2Q495Y8 402 aa25.35■■□□□ 1.65
VTI1B-205ENST00000555543 RGMBQ6NW40 437 aa25.35■■□□□ 1.65
VTI1B-205ENST00000555543 WBP1LQ9NX94 342 aa25.35■■□□□ 1.65
VTI1B-205ENST00000555543 ZNF70Q9UC06 446 aaPredicted RBP25.35■■□□□ 1.65
VTI1B-205ENST00000555543 SUGT1Q9Y2Z0 365 aa25.35■■□□□ 1.65
VTI1B-205ENST00000555543 SEMA3EO15041 775 aa25.34■■□□□ 1.65
VTI1B-205ENST00000555543 SURF6O75683 361 aaKnown RBP25.34■■□□□ 1.65
VTI1B-205ENST00000555543 PRDX5P30044 214 aa25.34■■□□□ 1.65
VTI1B-205ENST00000555543 FKBP1BP68106 108 aa25.34■■□□□ 1.65
VTI1B-205ENST00000555543 HDLBPQ00341 1268 aaKnown RBP25.34■■□□□ 1.65
VTI1B-205ENST00000555543 NEUROD6Q96NK8 337 aa25.34■■□□□ 1.65
VTI1B-205ENST00000555543 ZIC5Q96T25 663 aa25.34■■□□□ 1.65
VTI1B-205ENST00000555543 DENND2AQ9ULE3 1009 aa25.34■■□□□ 1.65
VTI1B-205ENST00000555543 FAM155AB1AL88 458 aaPredicted RBP25.33■■□□□ 1.65
VTI1B-205ENST00000555543 ZBTB22O15209 634 aa25.33■■□□□ 1.65
VTI1B-205ENST00000555543 FOXN1O15353 648 aa25.33■■□□□ 1.65
VTI1B-205ENST00000555543 TEKT1Q969V4 418 aa25.33■■□□□ 1.65
VTI1B-205ENST00000555543 YTHDC1Q96MU7 727 aaKnown RBP25.33■■□□□ 1.65
VTI1B-205ENST00000555543 DDX19BQ9UMR2 479 aa25.33■■□□□ 1.65
VTI1B-205ENST00000555543 NOP58Q9Y2X3 529 aaKnown RBP25.33■■□□□ 1.65
VTI1B-205ENST00000555543 MAST3O60307 1309 aa25.33■■□□□ 1.64
VTI1B-205ENST00000555543 OS9Q13438 667 aaPredicted RBP25.32■■□□□ 1.64
VTI1B-205ENST00000555543 ZBTB40Q9NUA8 1239 aa25.32■■□□□ 1.64
VTI1B-205ENST00000555543 SALL1Q9NSC2 1324 aa25.32■■□□□ 1.64
VTI1B-205ENST00000555543 UBE2Q2LH0YL09 131 aa25.31■■□□□ 1.64
VTI1B-205ENST00000555543 NF2P35240 595 aa25.31■■□□□ 1.64
VTI1B-205ENST00000555543 MAP2K2P36507 400 aa25.31■■□□□ 1.64
VTI1B-205ENST00000555543 ZNF157P51786 506 aaPredicted RBP25.31■■□□□ 1.64
VTI1B-205ENST00000555543 ZDHHC15Q96MV8 337 aa25.31■■□□□ 1.64
VTI1B-205ENST00000555543 MRIQ9BWK5 157 aa25.31■■□□□ 1.64
VTI1B-205ENST00000555543 FZD1Q9UP38 647 aa25.31■■□□□ 1.64
VTI1B-205ENST00000555543 PPP2R3BQ9Y5P8 575 aa25.31■■□□□ 1.64
VTI1B-205ENST00000555543 MAP2K1Q02750 393 aaPredicted RBP25.3■■□□□ 1.64
VTI1B-205ENST00000555543 PRKG1Q13976 671 aa25.3■■□□□ 1.64
VTI1B-205ENST00000555543 RASA3Q14644 834 aa25.3■■□□□ 1.64
VTI1B-205ENST00000555543 DIXDC1Q155Q3 683 aa25.3■■□□□ 1.64
VTI1B-205ENST00000555543 TNNI3KQ59H18 835 aa25.3■■□□□ 1.64
VTI1B-205ENST00000555543 APOBEC3HQ6NTF7 200 aaKnown RBP25.3■■□□□ 1.64
VTI1B-205ENST00000555543 FPGT-TNNI3KV9GXZ4 949 aa25.3■■□□□ 1.64
VTI1B-205ENST00000555543 PDS5AQ29RF7 1337 aaKnown RBP25.3■■□□□ 1.64
VTI1B-205ENST00000555543 SLC10A3P09131 477 aa25.29■■□□□ 1.64
VTI1B-205ENST00000555543 CACNB3P54284 484 aa25.29■■□□□ 1.64
VTI1B-205ENST00000555543 NOGQ13253 232 aa25.29■■□□□ 1.64
VTI1B-205ENST00000555543 TTLL12Q14166 644 aaPredicted RBP25.29■■□□□ 1.64
VTI1B-205ENST00000555543 PDE3AQ14432 1141 aa25.29■■□□□ 1.64
VTI1B-205ENST00000555543 HHIPL2Q6UWX4 724 aa25.29■■□□□ 1.64
VTI1B-205ENST00000555543 PI16Q6UXB8 463 aa25.29■■□□□ 1.64
VTI1B-205ENST00000555543 GPR108Q9NPR9 543 aa25.29■■□□□ 1.64
VTI1B-205ENST00000555543 TCP10L2B9ZVM9 353 aa25.28■■□□□ 1.64
VTI1B-205ENST00000555543 LDHBP07195 334 aaKnown RBP25.28■■□□□ 1.64
VTI1B-205ENST00000555543 NBPF12Q5TAG4 269 aaPredicted RBP25.28■■□□□ 1.64
VTI1B-205ENST00000555543 RASAL3Q86YV0 1011 aa25.28■■□□□ 1.64
VTI1B-205ENST00000555543 CDAN1Q8IWY9 1227 aa25.28■■□□□ 1.64
VTI1B-205ENST00000555543 AIDAQ96BJ3 306 aa25.28■■□□□ 1.64
VTI1B-205ENST00000555543 DAGLAQ9Y4D2 1042 aa25.28■■□□□ 1.64
VTI1B-205ENST00000555543 ARID4AP29374 1257 aaPredicted RBP25.27■■□□□ 1.64
VTI1B-205ENST00000555543 TNFAIP1Q13829 316 aa25.27■■□□□ 1.64
VTI1B-205ENST00000555543 GORABQ5T7V8 394 aa25.27■■□□□ 1.64
VTI1B-205ENST00000555543 COL13A1Q5TAT6 717 aaPredicted RBP25.27■■□□□ 1.64
VTI1B-205ENST00000555543 SIRT2Q8IXJ6 389 aa25.27■■□□□ 1.64
VTI1B-205ENST00000555543 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.27■■□□□ 1.64
VTI1B-205ENST00000555543 CCDC102AQ96A19 550 aa25.27■■□□□ 1.64
VTI1B-205ENST00000555543 DBNDD2Q9BQY9 259 aa25.27■■□□□ 1.64
VTI1B-205ENST00000555543 HMG20BQ9P0W2 317 aa25.27■■□□□ 1.64
VTI1B-205ENST00000555543 EXOC6BQ9Y2D4 811 aa25.27■■□□□ 1.64
VTI1B-205ENST00000555543 TEPSINQ96N21 525 aa25.26■■□□□ 1.63
VTI1B-205ENST00000555543 MCAMP43121 646 aa25.25■■□□□ 1.63
VTI1B-205ENST00000555543 TMEM39BQ9GZU3 492 aa25.25■■□□□ 1.63
VTI1B-205ENST00000555543 ANGEL1Q9UNK9 670 aaKnown RBP25.25■■□□□ 1.63
VTI1B-205ENST00000555543 ARMC9Q7Z3E5 817 aa25.24■■□□□ 1.63
VTI1B-205ENST00000555543 ZGPATQ8N5A5 531 aaKnown RBP25.24■■□□□ 1.63
VTI1B-205ENST00000555543 SPATA5Q8NB90 893 aa25.24■■□□□ 1.63
VTI1B-205ENST00000555543 TLR7Q9NYK1 1049 aaKnown RBP25.24■■□□□ 1.63
VTI1B-205ENST00000555543 ABCF2Q9UG63 623 aa25.24■■□□□ 1.63
VTI1B-205ENST00000555543 HSPA8P11142 646 aaKnown RBP25.23■■□□□ 1.63
VTI1B-205ENST00000555543 CTCFP49711 727 aaPredicted RBP25.23■■□□□ 1.63
VTI1B-205ENST00000555543 KIF23Q02241 960 aaPredicted RBP25.23■■□□□ 1.63
VTI1B-205ENST00000555543 SUPT20HL1Q3ZLR7 823 aa25.23■■□□□ 1.63
VTI1B-205ENST00000555543 LDLRAD1Q5T700 205 aa25.23■■□□□ 1.63
VTI1B-205ENST00000555543 RPAP2Q8IXW5 612 aaPredicted RBP25.23■■□□□ 1.63
VTI1B-205ENST00000555543 EAF2Q96CJ1 260 aaPredicted RBP25.23■■□□□ 1.63
VTI1B-205ENST00000555543 DBNLQ9UJU6 430 aaKnown RBP25.23■■□□□ 1.63
VTI1B-205ENST00000555543 MAP3K11Q16584 847 aa25.22■■□□□ 1.63
VTI1B-205ENST00000555543 MYH2Q9UKX2 1941 aa25.22■■□□□ 1.63
VTI1B-205ENST00000555543 UQCRFS1P1P0C7P4 283 aa25.21■■□□□ 1.63
VTI1B-205ENST00000555543 TNNI2P48788 182 aa25.21■■□□□ 1.63
VTI1B-205ENST00000555543 LBX1P52954 281 aa25.21■■□□□ 1.63
VTI1B-205ENST00000555543 CDC42EP5Q6NZY7 148 aa25.21■■□□□ 1.63
VTI1B-205ENST00000555543 TBC1D9Q6ZT07 1266 aa25.21■■□□□ 1.63
VTI1B-205ENST00000555543 DZIP1Q86YF9 867 aaKnown RBP25.21■■□□□ 1.63
VTI1B-205ENST00000555543 ZNF384Q8TF68 577 aa25.21■■□□□ 1.63
VTI1B-205ENST00000555543 CCDC8Q9H0W5 538 aaPredicted RBP25.21■■□□□ 1.63
VTI1B-205ENST00000555543 TMOD2Q9NZR1 351 aa25.21■■□□□ 1.63
VTI1B-205ENST00000555543 TSKSQ9UJT2 592 aa25.21■■□□□ 1.63
VTI1B-205ENST00000555543 OTOFQ9HC10 1997 aa25.2■■□□□ 1.63
VTI1B-205ENST00000555543 GAKO14976 1311 aa25.2■■□□□ 1.62
VTI1B-205ENST00000555543 PPP1R12BO60237 982 aaPredicted RBP25.2■■□□□ 1.62
VTI1B-205ENST00000555543 TTC39AQ5SRH9 613 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms