RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 TAF6LQ9Y6J9 622 aa12.19□□□□□ -0.46
NEK9-205ENST00000555405 HSPD1P10809 573 aaKnown RBP12.19□□□□□ -0.46
NEK9-205ENST00000555405 RTKN2Q8IZC4 609 aa12.19□□□□□ -0.46
NEK9-205ENST00000555405 TAOK3Q9H2K8 898 aa12.19□□□□□ -0.46
NEK9-205ENST00000555405 PICALMQ13492 652 aa12.18□□□□□ -0.46
NEK9-205ENST00000555405 SPTY2D1Q68D10 685 aaPredicted RBP12.18□□□□□ -0.46
NEK9-205ENST00000555405 SYT17Q9BSW7 474 aa12.18□□□□□ -0.46
NEK9-205ENST00000555405 SLKQ9H2G2 1235 aaPredicted RBP12.18□□□□□ -0.46
NEK9-205ENST00000555405 HELLSQ9NRZ9 838 aa12.18□□□□□ -0.46
NEK9-205ENST00000555405 CD2APQ9Y5K6 639 aa12.18□□□□□ -0.46
NEK9-205ENST00000555405 USP5P45974 858 aa12.18□□□□□ -0.46
NEK9-205ENST00000555405 NIM1KQ8IY84 436 aa12.18□□□□□ -0.46
NEK9-205ENST00000555405 C7orf43Q8WVR3 580 aa12.18□□□□□ -0.46
NEK9-205ENST00000555405 NAPBQ9H115 298 aa12.18□□□□□ -0.46
NEK9-205ENST00000555405 INCENPQ9NQS7 918 aa12.18□□□□□ -0.46
NEK9-205ENST00000555405 SCAF8Q9UPN6 1271 aaKnown RBP12.18□□□□□ -0.46
NEK9-205ENST00000555405 CASTP20810 708 aaKnown RBP12.18□□□□□ -0.46
NEK9-205ENST00000555405 CREB3L3Q68CJ9 461 aa12.18□□□□□ -0.46
NEK9-205ENST00000555405 ZNF512BQ96KM6 892 aaPredicted RBP12.18□□□□□ -0.46
NEK9-205ENST00000555405 SLX4Q8IY92 1834 aa12.17□□□□□ -0.46
NEK9-205ENST00000555405 CYP2D7A0A087X1C5 515 aa12.17□□□□□ -0.46
NEK9-205ENST00000555405 SGIP1Q9BQI5 828 aa12.17□□□□□ -0.46
NEK9-205ENST00000555405 SAP30BPQ9UHR5 308 aaKnown RBP12.17□□□□□ -0.46
NEK9-205ENST00000555405 COL24A1Q17RW2 1714 aa12.17□□□□□ -0.46
NEK9-205ENST00000555405 CACNB3P54284 484 aa12.17□□□□□ -0.46
NEK9-205ENST00000555405 ADCK5Q3MIX3 580 aa12.17□□□□□ -0.46
NEK9-205ENST00000555405 SUPT20HQ8NEM7 779 aa12.17□□□□□ -0.46
NEK9-205ENST00000555405 NSUN4Q96CB9 384 aaKnown RBP12.17□□□□□ -0.46
NEK9-205ENST00000555405 PCDHAC2Q9Y5I4 1007 aa12.17□□□□□ -0.46
NEK9-205ENST00000555405 LAMB2P55268 1798 aa12.17□□□□□ -0.46
NEK9-205ENST00000555405 FGAP02671 866 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 RNF20Q5VTR2 975 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 CC2D2BQ6DHV5 1058 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 HSCBQ8IWL3 235 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 SEMA3EO15041 775 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 UBE3CQ15386 1083 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 ZGPATQ8N5A5 531 aaKnown RBP12.16□□□□□ -0.46
NEK9-205ENST00000555405 TGFBRAP1Q8WUH2 860 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 RAD50Q92878 1312 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 C10orf71Q711Q0 1435 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 SLC27A2O14975 620 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 EIF5BO60841 1220 aaKnown RBP12.16□□□□□ -0.46
NEK9-205ENST00000555405 CTDSPL2Q05D32 466 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 MAPKAPK5Q8IW41 473 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 CERS5Q8N5B7 392 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 SNX14Q9Y5W7 946 aa12.16□□□□□ -0.46
NEK9-205ENST00000555405 USP17L3A6NCW0 530 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 USP17L4A6NCW7 530 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 SMIM22K7EJ46 135 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 KIAA2012Q0VF49 1180 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 BECN1Q14457 450 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 USP17L1Q7RTZ2 530 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 PODNQ7Z5L7 613 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 ZNF384Q8TF68 577 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 STRBPQ96SI9 672 aaKnown RBP12.15□□□□□ -0.46
NEK9-205ENST00000555405 COL1A1P02452 1464 aaPredicted RBP12.15□□□□□ -0.46
NEK9-205ENST00000555405 ANKRD31Q8N7Z5 1873 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 ZNF213O14771 459 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 PRDM1O75626 825 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 IARSP41252 1262 aaKnown RBP12.15□□□□□ -0.46
NEK9-205ENST00000555405 BTDP43251 543 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 TCP10Q12799 353 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 MAP4K1Q92918 833 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 DDRGK1Q96HY6 314 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 IPO9Q96P70 1041 aaKnown RBP12.15□□□□□ -0.46
NEK9-205ENST00000555405 MED23Q9ULK4 1368 aa12.15□□□□□ -0.46
NEK9-205ENST00000555405 PPFIA3O75145 1194 aa12.15□□□□□ -0.47
NEK9-205ENST00000555405 IL1R1P14778 569 aa12.15□□□□□ -0.47
NEK9-205ENST00000555405 COL9A3Q14050 684 aaPredicted RBP12.15□□□□□ -0.47
NEK9-205ENST00000555405 RAB11FIP4Q86YS3 637 aa12.15□□□□□ -0.47
NEK9-205ENST00000555405 ZSCAN29Q8IWY8 852 aaPredicted RBP12.15□□□□□ -0.47
NEK9-205ENST00000555405 NACAP1Q9BZK3 213 aa12.15□□□□□ -0.47
NEK9-205ENST00000555405 MTMR7Q9Y216 660 aa12.15□□□□□ -0.47
NEK9-205ENST00000555405 U3KPZ7 1027 aaPredicted RBP12.15□□□□□ -0.47
NEK9-205ENST00000555405 CACNA1SQ13698 1873 aa12.14□□□□□ -0.47
NEK9-205ENST00000555405 YDJCA8MPS7 323 aa12.14□□□□□ -0.47
NEK9-205ENST00000555405 PSMD14O00487 310 aa12.14□□□□□ -0.47
NEK9-205ENST00000555405 CD2BP2O95400 341 aaKnown RBP12.14□□□□□ -0.47
NEK9-205ENST00000555405 LDHCP07864 332 aa12.14□□□□□ -0.47
NEK9-205ENST00000555405 CYP21A2P08686 494 aa12.14□□□□□ -0.47
NEK9-205ENST00000555405 IMMTQ16891 758 aaKnown RBP12.14□□□□□ -0.47
NEK9-205ENST00000555405 SH3RF3Q8TEJ3 882 aaPredicted RBP12.14□□□□□ -0.47
NEK9-205ENST00000555405 MCM9Q9NXL9 1143 aa12.14□□□□□ -0.47
NEK9-205ENST00000555405 BAG3O95817 575 aa12.14□□□□□ -0.47
NEK9-205ENST00000555405 HSPA4P34932 840 aa12.14□□□□□ -0.47
NEK9-205ENST00000555405 TEX11Q8IYF3 940 aa12.14□□□□□ -0.47
NEK9-205ENST00000555405 TBC1D22AQ8WUA7 517 aa12.14□□□□□ -0.47
NEK9-205ENST00000555405 TCRBV5S4A2TA0A5A2 114 aa12.13□□□□□ -0.47
NEK9-205ENST00000555405 NFKBIEO00221 500 aa12.13□□□□□ -0.47
NEK9-205ENST00000555405 RBM25P49756 843 aaKnown RBP12.13□□□□□ -0.47
NEK9-205ENST00000555405 STK3Q13188 491 aa12.13□□□□□ -0.47
NEK9-205ENST00000555405 IFNL3Q8IZI9 196 aa12.13□□□□□ -0.47
NEK9-205ENST00000555405 USP17L12C9JPN9 530 aa12.13□□□□□ -0.47
NEK9-205ENST00000555405 USP17L21D6R901 530 aa12.13□□□□□ -0.47
NEK9-205ENST00000555405 KDM4AO75164 1064 aa12.13□□□□□ -0.47
NEK9-205ENST00000555405 POLR3DP05423 398 aaPredicted RBP12.13□□□□□ -0.47
NEK9-205ENST00000555405 CRNKL1Q9BZJ0 848 aaKnown RBP12.13□□□□□ -0.47
NEK9-205ENST00000555405 CLRN2A0PK11 232 aa12.13□□□□□ -0.47
NEK9-205ENST00000555405 ST18O60284 1047 aa12.13□□□□□ -0.47
NEK9-205ENST00000555405 EVX2Q03828 476 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms