RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 SPDYE2BA6NHP3 402 aa17.45■□□□□ 0.38
SHMT2-217ENST00000555116 SPDYE6P0CI01 402 aa17.45■□□□□ 0.38
SHMT2-217ENST00000555116 MCAMP43121 646 aa17.45■□□□□ 0.38
SHMT2-217ENST00000555116 HDLBPQ00341 1268 aaKnown RBP17.45■□□□□ 0.38
SHMT2-217ENST00000555116 KRT26Q7Z3Y9 468 aa17.45■□□□□ 0.38
SHMT2-217ENST00000555116 ZNF512BQ96KM6 892 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-217ENST00000555116 AOX1Q06278 1338 aa17.44■□□□□ 0.38
SHMT2-217ENST00000555116 CRKP46108 304 aa17.44■□□□□ 0.38
SHMT2-217ENST00000555116 CCDC158Q5M9N0 1113 aa17.44■□□□□ 0.38
SHMT2-217ENST00000555116 TTC39AQ5SRH9 613 aa17.44■□□□□ 0.38
SHMT2-217ENST00000555116 PI16Q6UXB8 463 aa17.44■□□□□ 0.38
SHMT2-217ENST00000555116 SPATA5Q8NB90 893 aa17.44■□□□□ 0.38
SHMT2-217ENST00000555116 PRMT6Q96LA8 375 aaPredicted RBP17.44■□□□□ 0.38
SHMT2-217ENST00000555116 MRIQ9BWK5 157 aa17.44■□□□□ 0.38
SHMT2-217ENST00000555116 ADM5C9JUS6 153 aa17.44■□□□□ 0.38
SHMT2-217ENST00000555116 PRDX5P30044 214 aa17.44■□□□□ 0.38
SHMT2-217ENST00000555116 DLK2Q6UY11 383 aa17.44■□□□□ 0.38
SHMT2-217ENST00000555116 CLASRPQ8N2M8 674 aaKnown RBP17.44■□□□□ 0.38
SHMT2-217ENST00000555116 MAST3O60307 1309 aa17.43■□□□□ 0.38
SHMT2-217ENST00000555116 HTRA3P83110 453 aa17.43■□□□□ 0.38
SHMT2-217ENST00000555116 LDHBP07195 334 aaKnown RBP17.42■□□□□ 0.38
SHMT2-217ENST00000555116 RBM5P52756 815 aaKnown RBP eCLIP17.42■□□□□ 0.38
SHMT2-217ENST00000555116 SULF1Q8IWU6 871 aa17.42■□□□□ 0.38
SHMT2-217ENST00000555116 ZGPATQ8N5A5 531 aaKnown RBP17.42■□□□□ 0.38
SHMT2-217ENST00000555116 LRRCC1Q9C099 1032 aa17.42■□□□□ 0.38
SHMT2-217ENST00000555116 SMARCA5O60264 1052 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-217ENST00000555116 HHIPL2Q6UWX4 724 aa17.41■□□□□ 0.38
SHMT2-217ENST00000555116 TEKT1Q969V4 418 aa17.41■□□□□ 0.38
SHMT2-217ENST00000555116 SCAF8Q9UPN6 1271 aaKnown RBP17.41■□□□□ 0.38
SHMT2-217ENST00000555116 TMEM88BA6NKF7 163 aa17.41■□□□□ 0.38
SHMT2-217ENST00000555116 HDAC1Q13547 482 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-217ENST00000555116 CST9Q5W186 159 aa17.41■□□□□ 0.38
SHMT2-217ENST00000555116 ZDHHC15Q96MV8 337 aa17.41■□□□□ 0.38
SHMT2-217ENST00000555116 SNRKQ9NRH2 765 aa17.41■□□□□ 0.38
SHMT2-217ENST00000555116 CREBZFQ9NS37 354 aa17.41■□□□□ 0.38
SHMT2-217ENST00000555116 ABCF2Q9UG63 623 aa17.41■□□□□ 0.38
SHMT2-217ENST00000555116 TBC1D9Q6ZT07 1266 aa17.4■□□□□ 0.38
SHMT2-217ENST00000555116 APOBEC3FQ8IUX4 373 aaKnown RBP17.4■□□□□ 0.38
SHMT2-217ENST00000555116 CLRN2A0PK11 232 aa17.39■□□□□ 0.38
SHMT2-217ENST00000555116 IFIT2P09913 472 aaKnown RBP17.39■□□□□ 0.38
SHMT2-217ENST00000555116 IRX6P78412 446 aaPredicted RBP17.39■□□□□ 0.38
SHMT2-217ENST00000555116 DIXDC1Q155Q3 683 aa17.39■□□□□ 0.38
SHMT2-217ENST00000555116 SPDYE2Q495Y8 402 aa17.39■□□□□ 0.38
SHMT2-217ENST00000555116 ERICH6BQ5W0A0 696 aa17.39■□□□□ 0.38
SHMT2-217ENST00000555116 SPTY2D1Q68D10 685 aaPredicted RBP17.39■□□□□ 0.38
SHMT2-217ENST00000555116 APOBEC3HQ6NTF7 200 aaKnown RBP17.39■□□□□ 0.38
SHMT2-217ENST00000555116 ZNF70Q9UC06 446 aaPredicted RBP17.39■□□□□ 0.38
SHMT2-217ENST00000555116 MAST2Q6P0Q8 1798 aa17.39■□□□□ 0.38
SHMT2-217ENST00000555116 DOCK2Q92608 1830 aa17.39■□□□□ 0.37
SHMT2-217ENST00000555116 MYO1BO43795 1136 aa17.39■□□□□ 0.37
SHMT2-217ENST00000555116 CELF2O95319 508 aaKnown RBP17.39■□□□□ 0.37
SHMT2-217ENST00000555116 ZAP70P43403 619 aa17.39■□□□□ 0.37
SHMT2-217ENST00000555116 ERICH6Q7L0X2 663 aa17.39■□□□□ 0.37
SHMT2-217ENST00000555116 CDCA5Q96FF9 252 aa17.39■□□□□ 0.37
SHMT2-217ENST00000555116 TDRD3Q9H7E2 651 aaKnown RBP17.39■□□□□ 0.37
SHMT2-217ENST00000555116 DAGLAQ9Y4D2 1042 aa17.39■□□□□ 0.37
SHMT2-217ENST00000555116 CYP2E1P05181 493 aaPredicted RBP17.38■□□□□ 0.37
SHMT2-217ENST00000555116 ZNF384Q8TF68 577 aa17.38■□□□□ 0.37
SHMT2-217ENST00000555116 BCL11AQ9H165 835 aa17.38■□□□□ 0.37
SHMT2-217ENST00000555116 DNAJC5GQ8N7S2 189 aa17.37■□□□□ 0.37
SHMT2-217ENST00000555116 MECOMQ03112 1051 aa17.37■□□□□ 0.37
SHMT2-217ENST00000555116 DZIP1Q86YF9 867 aaKnown RBP17.37■□□□□ 0.37
SHMT2-217ENST00000555116 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.37■□□□□ 0.37
SHMT2-217ENST00000555116 ZNF408Q9H9D4 720 aa17.37■□□□□ 0.37
SHMT2-217ENST00000555116 GAKO14976 1311 aa17.37■□□□□ 0.37
SHMT2-217ENST00000555116 PRAMEF18Q5VWM3 479 aa17.36■□□□□ 0.37
SHMT2-217ENST00000555116 NSUN4Q96CB9 384 aaKnown RBP17.36■□□□□ 0.37
SHMT2-217ENST00000555116 VEZTQ9HBM0 779 aa17.36■□□□□ 0.37
SHMT2-217ENST00000555116 PIH1D3Q9NQM4 214 aaKnown RBP17.36■□□□□ 0.37
SHMT2-217ENST00000555116 FAM163AQ96GL9 167 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-217ENST00000555116 DEFB129Q9H1M3 183 aa17.35■□□□□ 0.37
SHMT2-217ENST00000555116 LRP2BPQ9P2M1 347 aa17.35■□□□□ 0.37
SHMT2-217ENST00000555116 NDUFB9Q9Y6M9 179 aa17.35■□□□□ 0.37
SHMT2-217ENST00000555116 GCC1Q96CN9 775 aa17.35■□□□□ 0.37
SHMT2-217ENST00000555116 RAI14Q9P0K7 980 aa17.35■□□□□ 0.37
SHMT2-217ENST00000555116 MROH7-TTC4A0A0A0MT08 1334 aa17.34■□□□□ 0.37
SHMT2-217ENST00000555116 ATP5JP18859 108 aa17.34■□□□□ 0.37
SHMT2-217ENST00000555116 CDC42EP5Q6NZY7 148 aa17.34■□□□□ 0.37
SHMT2-217ENST00000555116 SLF2Q8IX21 1173 aa17.34■□□□□ 0.37
SHMT2-217ENST00000555116 PAPPA2Q9BXP8 1791 aa17.34■□□□□ 0.37
SHMT2-217ENST00000555116 RWDD1Q9H446 243 aaPredicted RBP17.34■□□□□ 0.37
SHMT2-217ENST00000555116 ANTXR1Q9H6X2 564 aa17.34■□□□□ 0.37
SHMT2-217ENST00000555116 PPP2R3BQ9Y5P8 575 aa17.34■□□□□ 0.37
SHMT2-217ENST00000555116 TLL2Q9Y6L7 1015 aa17.34■□□□□ 0.37
SHMT2-217ENST00000555116 IGHDP01880 384 aa17.33■□□□□ 0.37
SHMT2-217ENST00000555116 RASA3Q14644 834 aa17.33■□□□□ 0.37
SHMT2-217ENST00000555116 GBA2Q9HCG7 927 aaPredicted RBP17.33■□□□□ 0.37
SHMT2-217ENST00000555116 ABT1Q9ULW3 272 aaKnown RBP17.33■□□□□ 0.37
SHMT2-217ENST00000555116 MYH7P12883 1935 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 CNTNAP1P78357 1384 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 AK9Q5TCS8 1911 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 RASSF10A6NK89 507 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 TCP10L2B9ZVM9 353 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 CACNB3P54284 484 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 GSTO1P78417 241 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 TNFAIP1Q13829 316 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 FKBP1CQ5VVH2 108 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 SMC5Q8IY18 1101 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 CDK5RAP2Q96SN8 1893 aa17.33■□□□□ 0.36
SHMT2-217ENST00000555116 CEP350Q5VT06 3117 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms