RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 USP17L8P0C7I0 530 aa12.35□□□□□ -0.43
SYNE2-215ENST00000554997 PRDX5P30044 214 aa12.35□□□□□ -0.43
SYNE2-215ENST00000554997 GSTO1P78417 241 aa12.35□□□□□ -0.43
SYNE2-215ENST00000554997 MECOMQ03112 1051 aa12.35□□□□□ -0.43
SYNE2-215ENST00000554997 SLC9C2Q5TAH2 1124 aa12.35□□□□□ -0.43
SYNE2-215ENST00000554997 KIAA0825Q8IV33 1275 aa12.35□□□□□ -0.43
SYNE2-215ENST00000554997 SLF2Q8IX21 1173 aa12.35□□□□□ -0.43
SYNE2-215ENST00000554997 OGFOD1Q8N543 542 aa12.35□□□□□ -0.43
SYNE2-215ENST00000554997 NSUN4Q96CB9 384 aaKnown RBP12.35□□□□□ -0.43
SYNE2-215ENST00000554997 TTF2Q9UNY4 1162 aaKnown RBP12.35□□□□□ -0.43
SYNE2-215ENST00000554997 RNF113AO15541 343 aaKnown RBP12.34□□□□□ -0.43
SYNE2-215ENST00000554997 ZFYP08048 801 aaPredicted RBP12.34□□□□□ -0.43
SYNE2-215ENST00000554997 GMPSP49915 693 aaPredicted RBP12.34□□□□□ -0.43
SYNE2-215ENST00000554997 ZNF280AP59817 542 aaPredicted RBP12.34□□□□□ -0.43
SYNE2-215ENST00000554997 UBE3CQ15386 1083 aa12.34□□□□□ -0.43
SYNE2-215ENST00000554997 ZNF384Q8TF68 577 aa12.34□□□□□ -0.43
SYNE2-215ENST00000554997 L3MBTL3Q96JM7 780 aaPredicted RBP12.34□□□□□ -0.43
SYNE2-215ENST00000554997 FSD1Q9BTV5 496 aa12.34□□□□□ -0.43
SYNE2-215ENST00000554997 RNF216Q9NWF9 866 aaPredicted RBP12.34□□□□□ -0.43
SYNE2-215ENST00000554997 CNOT7Q9UIV1 285 aaKnown RBP12.34□□□□□ -0.43
SYNE2-215ENST00000554997 SERPINA10Q9UK55 444 aa12.34□□□□□ -0.43
SYNE2-215ENST00000554997 HDAC9Q9UKV0 1011 aa12.34□□□□□ -0.43
SYNE2-215ENST00000554997 MAST3O60307 1309 aa12.34□□□□□ -0.43
SYNE2-215ENST00000554997 SBF1O95248 1867 aa12.34□□□□□ -0.43
SYNE2-215ENST00000554997 F8W031 263 aaPredicted RBP12.33□□□□□ -0.44
SYNE2-215ENST00000554997 H7C1D1 291 aa12.33□□□□□ -0.44
SYNE2-215ENST00000554997 YY1P25490 414 aa12.33□□□□□ -0.44
SYNE2-215ENST00000554997 HOXD11P31277 338 aaPredicted RBP12.33□□□□□ -0.44
SYNE2-215ENST00000554997 ADD2P35612 726 aa12.33□□□□□ -0.44
SYNE2-215ENST00000554997 NAA16Q6N069 864 aaPredicted RBP12.33□□□□□ -0.44
SYNE2-215ENST00000554997 HHIPL2Q6UWX4 724 aa12.33□□□□□ -0.44
SYNE2-215ENST00000554997 DZIP1Q86YF9 867 aaKnown RBP12.33□□□□□ -0.44
SYNE2-215ENST00000554997 GPRC5DQ9NZD1 345 aa12.33□□□□□ -0.44
SYNE2-215ENST00000554997 CCDC88AQ3V6T2 1871 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 TCRBV5S4A2TA0A5A2 114 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 HIP1O00291 1037 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 PDE6AP16499 860 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 CYP7A1P22680 504 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 SCNN1DP51172 638 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 MAGEB6Q8N7X4 407 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 MTMR14Q8NCE2 650 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 TEKT1Q969V4 418 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 ZDHHC15Q96MV8 337 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 ZNF532Q9HCE3 1301 aa12.32□□□□□ -0.44
SYNE2-215ENST00000554997 GPR75-ASB3A0A0A6YYF3 556 aa12.31□□□□□ -0.44
SYNE2-215ENST00000554997 LMOD1P29536 600 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-215ENST00000554997 EPS15P42566 896 aa12.31□□□□□ -0.44
SYNE2-215ENST00000554997 CRKP46108 304 aa12.31□□□□□ -0.44
SYNE2-215ENST00000554997 PPP4CP60510 307 aa12.31□□□□□ -0.44
SYNE2-215ENST00000554997 DIXDC1Q155Q3 683 aa12.31□□□□□ -0.44
SYNE2-215ENST00000554997 MICALL2Q8IY33 904 aa12.31□□□□□ -0.44
SYNE2-215ENST00000554997 MYOZ2Q9NPC6 264 aa12.31□□□□□ -0.44
SYNE2-215ENST00000554997 AKAP11Q9UKA4 1901 aa12.31□□□□□ -0.44
SYNE2-215ENST00000554997 POTECB2RU33 542 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 BAG3O95817 575 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 CHGBP05060 677 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 CHMLP26374 656 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 DLGAP5Q15398 846 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 CFAP100Q494V2 611 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 ZMYM1Q5SVZ6 1142 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 APOBEC3HQ6NTF7 200 aaKnown RBP12.3□□□□□ -0.44
SYNE2-215ENST00000554997 APPBP2Q92624 585 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 PRMT6Q96LA8 375 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-215ENST00000554997 HELLSQ9NRZ9 838 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 HACL1Q9UJ83 578 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 DICER1Q9UPY3 1922 aaKnown RBP12.3□□□□□ -0.44
SYNE2-215ENST00000554997 SCN9AQ15858 1988 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 GAKO14976 1311 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 RFX7Q2KHR2 1363 aa12.3□□□□□ -0.44
SYNE2-215ENST00000554997 SHTN1A0MZ66 631 aa12.29□□□□□ -0.44
SYNE2-215ENST00000554997 IQCA1LA6NCM1 817 aa12.29□□□□□ -0.44
SYNE2-215ENST00000554997 RBM5P52756 815 aaKnown RBP eCLIP12.29□□□□□ -0.44
SYNE2-215ENST00000554997 SLFNL1Q499Z3 407 aa12.29□□□□□ -0.44
SYNE2-215ENST00000554997 MCMDC2Q4G0Z9 681 aa12.29□□□□□ -0.44
SYNE2-215ENST00000554997 SAMD7Q7Z3H4 446 aa12.29□□□□□ -0.44
SYNE2-215ENST00000554997 ADGRA1Q86SQ6 560 aa12.29□□□□□ -0.44
SYNE2-215ENST00000554997 CERS3Q8IU89 383 aa12.29□□□□□ -0.44
SYNE2-215ENST00000554997 OSBP2Q969R2 916 aa12.29□□□□□ -0.44
SYNE2-215ENST00000554997 ZBED3Q96IU2 234 aaPredicted RBP12.29□□□□□ -0.44
SYNE2-215ENST00000554997 PUS7LQ9H0K6 701 aaKnown RBP12.29□□□□□ -0.44
SYNE2-215ENST00000554997 ADARB2Q9NS39 739 aaKnown RBP12.29□□□□□ -0.44
SYNE2-215ENST00000554997 DAGLAQ9Y4D2 1042 aa12.29□□□□□ -0.44
SYNE2-215ENST00000554997 MROH7-TTC4A0A0A0MT08 1334 aa12.29□□□□□ -0.44
SYNE2-215ENST00000554997 MAGEB6P1A0A0J9YX57 407 aa12.28□□□□□ -0.44
SYNE2-215ENST00000554997 SPDYE2BA6NHP3 402 aa12.28□□□□□ -0.44
SYNE2-215ENST00000554997 SPDYE6P0CI01 402 aa12.28□□□□□ -0.44
SYNE2-215ENST00000554997 VEGFAP15692 232 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-215ENST00000554997 NMIQ13287 307 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-215ENST00000554997 RBM26Q5T8P6 1007 aaKnown RBP12.28□□□□□ -0.44
SYNE2-215ENST00000554997 CWC27Q6UX04 472 aaKnown RBP12.28□□□□□ -0.44
SYNE2-215ENST00000554997 USP50Q70EL3 339 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-215ENST00000554997 RUFY2Q8WXA3 655 aa12.28□□□□□ -0.44
SYNE2-215ENST00000554997 NOL10Q9BSC4 688 aaKnown RBP12.28□□□□□ -0.44
SYNE2-215ENST00000554997 RRAGCQ9HB90 399 aa12.28□□□□□ -0.44
SYNE2-215ENST00000554997 DIAPH3Q9NSV4 1193 aa12.28□□□□□ -0.44
SYNE2-215ENST00000554997 USP40Q9NVE5 1235 aa12.28□□□□□ -0.44
SYNE2-215ENST00000554997 WNT10BO00744 389 aa12.27□□□□□ -0.45
SYNE2-215ENST00000554997 MYO1BO43795 1136 aa12.27□□□□□ -0.45
SYNE2-215ENST00000554997 CDC45O75419 566 aa12.27□□□□□ -0.45
SYNE2-215ENST00000554997 PLCG2P16885 1265 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms