RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ZDHHC15Q96MV8 337 aa19.9■□□□□ 0.78
CCDC88C-209ENST00000554872 BEGAINQ9BUH8 593 aa19.9■□□□□ 0.78
CCDC88C-209ENST00000554872 SSC5DA1L4H1 1573 aa19.9■□□□□ 0.78
CCDC88C-209ENST00000554872 PNMA6EA0A0J9YXQ4 647 aa19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 ZBTB7BO15156 539 aaPredicted RBP19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 MS4A1P11836 297 aa19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 AOX1Q06278 1338 aa19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 CHAF1AQ13111 956 aaPredicted RBP19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 GRM1Q13255 1194 aa19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 GRIK5Q16478 980 aa19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 RASAL3Q86YV0 1011 aa19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 SSH3Q8TE77 659 aa19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 TEKT1Q969V4 418 aa19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 SCAF8Q9UPN6 1271 aaKnown RBP19.89■□□□□ 0.77
CCDC88C-209ENST00000554872 RBM5P52756 815 aaKnown RBP eCLIP19.88■□□□□ 0.77
CCDC88C-209ENST00000554872 LDLRAD1Q5T700 205 aa19.88■□□□□ 0.77
CCDC88C-209ENST00000554872 FKBP1CQ5VVH2 108 aa19.88■□□□□ 0.77
CCDC88C-209ENST00000554872 PRAMEF18Q5VWM3 479 aa19.88■□□□□ 0.77
CCDC88C-209ENST00000554872 HHIPL2Q6UWX4 724 aa19.88■□□□□ 0.77
CCDC88C-209ENST00000554872 ARMC9Q7Z3E5 817 aa19.88■□□□□ 0.77
CCDC88C-209ENST00000554872 ZNF70Q9UC06 446 aaPredicted RBP19.88■□□□□ 0.77
CCDC88C-209ENST00000554872 DENND2AQ9ULE3 1009 aa19.88■□□□□ 0.77
CCDC88C-209ENST00000554872 CLRN2A0PK11 232 aa19.87■□□□□ 0.77
CCDC88C-209ENST00000554872 SUPT20HL1Q3ZLR7 823 aa19.87■□□□□ 0.77
CCDC88C-209ENST00000554872 CCDC102BQ68D86 513 aa19.87■□□□□ 0.77
CCDC88C-209ENST00000554872 ITPRIPQ8IWB1 547 aa19.87■□□□□ 0.77
CCDC88C-209ENST00000554872 SAGE1Q9NXZ1 904 aa19.87■□□□□ 0.77
CCDC88C-209ENST00000554872 A0A1B0GUL7 405 aa19.86■□□□□ 0.77
CCDC88C-209ENST00000554872 PHKA1P46020 1223 aa19.86■□□□□ 0.77
CCDC88C-209ENST00000554872 ATP8B2P98198 1209 aa19.86■□□□□ 0.77
CCDC88C-209ENST00000554872 TFCP2Q12800 502 aa19.86■□□□□ 0.77
CCDC88C-209ENST00000554872 RASA3Q14644 834 aa19.86■□□□□ 0.77
CCDC88C-209ENST00000554872 MVPQ14764 893 aaKnown RBP19.86■□□□□ 0.77
CCDC88C-209ENST00000554872 ZIC5Q96T25 663 aa19.86■□□□□ 0.77
CCDC88C-209ENST00000554872 GPR108Q9NPR9 543 aa19.86■□□□□ 0.77
CCDC88C-209ENST00000554872 LAMB1P07942 1786 aa19.85■□□□□ 0.77
CCDC88C-209ENST00000554872 LBX1P52954 281 aa19.85■□□□□ 0.77
CCDC88C-209ENST00000554872 APOBEC3HQ6NTF7 200 aaKnown RBP19.85■□□□□ 0.77
CCDC88C-209ENST00000554872 MOB2Q70IA6 237 aa19.85■□□□□ 0.77
CCDC88C-209ENST00000554872 ZGPATQ8N5A5 531 aaKnown RBP19.85■□□□□ 0.77
CCDC88C-209ENST00000554872 TDRD3Q9H7E2 651 aaKnown RBP19.85■□□□□ 0.77
CCDC88C-209ENST00000554872 VEZTQ9HBM0 779 aa19.85■□□□□ 0.77
CCDC88C-209ENST00000554872 NOP58Q9Y2X3 529 aaKnown RBP19.85■□□□□ 0.77
CCDC88C-209ENST00000554872 RPAP1Q9BWH6 1393 aaPredicted RBP19.84■□□□□ 0.77
CCDC88C-209ENST00000554872 UBE2Q2LH0YL09 131 aa19.84■□□□□ 0.77
CCDC88C-209ENST00000554872 PPP1R12BO60237 982 aaPredicted RBP19.84■□□□□ 0.77
CCDC88C-209ENST00000554872 ADORA1P30542 326 aa19.84■□□□□ 0.77
CCDC88C-209ENST00000554872 KIF23Q02241 960 aaPredicted RBP19.84■□□□□ 0.77
CCDC88C-209ENST00000554872 G3BP1Q13283 466 aaKnown RBP eCLIP19.84■□□□□ 0.77
CCDC88C-209ENST00000554872 FAM83AQ86UY5 434 aa19.84■□□□□ 0.77
CCDC88C-209ENST00000554872 XAGE2Q96GT9 111 aa19.84■□□□□ 0.77
CCDC88C-209ENST00000554872 TEPSINQ96N21 525 aa19.84■□□□□ 0.77
CCDC88C-209ENST00000554872 TNNI2P48788 182 aa19.83■□□□□ 0.77
CCDC88C-209ENST00000554872 TIMM10P62072 90 aa19.83■□□□□ 0.77
CCDC88C-209ENST00000554872 RASGRF1Q13972 1273 aa19.83■□□□□ 0.77
CCDC88C-209ENST00000554872 TTLL12Q14166 644 aaPredicted RBP19.83■□□□□ 0.77
CCDC88C-209ENST00000554872 TNS4Q8IZW8 715 aa19.83■□□□□ 0.77
CCDC88C-209ENST00000554872 PRDX5P30044 214 aa19.82■□□□□ 0.76
CCDC88C-209ENST00000554872 NBPF12Q5TAG4 269 aaPredicted RBP19.82■□□□□ 0.76
CCDC88C-209ENST00000554872 CSRNP1Q96S65 589 aa19.82■□□□□ 0.76
CCDC88C-209ENST00000554872 RCAN3Q9UKA8 241 aa19.82■□□□□ 0.76
CCDC88C-209ENST00000554872 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.82■□□□□ 0.76
CCDC88C-209ENST00000554872 LDHBP07195 334 aaKnown RBP19.81■□□□□ 0.76
CCDC88C-209ENST00000554872 ARID4AP29374 1257 aaPredicted RBP19.81■□□□□ 0.76
CCDC88C-209ENST00000554872 CEP85Q6P2H3 762 aa19.81■□□□□ 0.76
CCDC88C-209ENST00000554872 TMOD2Q9NZR1 351 aa19.81■□□□□ 0.76
CCDC88C-209ENST00000554872 ANGEL1Q9UNK9 670 aaKnown RBP19.81■□□□□ 0.76
CCDC88C-209ENST00000554872 DAGLAQ9Y4D2 1042 aa19.81■□□□□ 0.76
CCDC88C-209ENST00000554872 GAKO14976 1311 aa19.8■□□□□ 0.76
CCDC88C-209ENST00000554872 PANK1Q8TE04 598 aa19.8■□□□□ 0.76
CCDC88C-209ENST00000554872 AKAP11Q9UKA4 1901 aa19.79■□□□□ 0.76
CCDC88C-209ENST00000554872 ZBTB48P10074 688 aaPredicted RBP19.79■□□□□ 0.76
CCDC88C-209ENST00000554872 IREB2P48200 963 aaKnown RBP19.79■□□□□ 0.76
CCDC88C-209ENST00000554872 TM4SF4P48230 202 aa19.79■□□□□ 0.76
CCDC88C-209ENST00000554872 SPTY2D1Q68D10 685 aaPredicted RBP19.79■□□□□ 0.76
CCDC88C-209ENST00000554872 FAM163AQ96GL9 167 aaPredicted RBP19.79■□□□□ 0.76
CCDC88C-209ENST00000554872 C1orf115Q9H7X2 142 aa19.79■□□□□ 0.76
CCDC88C-209ENST00000554872 DDX19BQ9UMR2 479 aa19.79■□□□□ 0.76
CCDC88C-209ENST00000554872 TCP10L2B9ZVM9 353 aa19.78■□□□□ 0.76
CCDC88C-209ENST00000554872 IGSF3O75054 1194 aa19.78■□□□□ 0.76
CCDC88C-209ENST00000554872 USP2O75604 605 aaPredicted RBP19.78■□□□□ 0.76
CCDC88C-209ENST00000554872 TNNI3KQ59H18 835 aa19.78■□□□□ 0.76
CCDC88C-209ENST00000554872 SPRYD7Q5W111 196 aa19.78■□□□□ 0.76
CCDC88C-209ENST00000554872 HOOK2Q96ED9 719 aa19.78■□□□□ 0.76
CCDC88C-209ENST00000554872 ZNF512BQ96KM6 892 aaPredicted RBP19.78■□□□□ 0.76
CCDC88C-209ENST00000554872 CHMP4BQ9H444 224 aaKnown RBP19.78■□□□□ 0.76
CCDC88C-209ENST00000554872 FPGT-TNNI3KV9GXZ4 949 aa19.78■□□□□ 0.76
CCDC88C-209ENST00000554872 OTOFQ9HC10 1997 aa19.77■□□□□ 0.76
CCDC88C-209ENST00000554872 SURF6O75683 361 aaKnown RBP19.77■□□□□ 0.76
CCDC88C-209ENST00000554872 UQCRFS1P1P0C7P4 283 aa19.77■□□□□ 0.76
CCDC88C-209ENST00000554872 SREBF2Q12772 1141 aa19.77■□□□□ 0.76
CCDC88C-209ENST00000554872 SLF2Q8IX21 1173 aa19.77■□□□□ 0.76
CCDC88C-209ENST00000554872 ANKRD13AQ8IZ07 590 aa19.77■□□□□ 0.76
CCDC88C-209ENST00000554872 CFHR5Q9BXR6 569 aa19.77■□□□□ 0.76
CCDC88C-209ENST00000554872 TMEM39BQ9GZU3 492 aa19.77■□□□□ 0.76
CCDC88C-209ENST00000554872 RNF186Q9NXI6 227 aa19.77■□□□□ 0.76
CCDC88C-209ENST00000554872 RFX7Q2KHR2 1363 aa19.77■□□□□ 0.76
CCDC88C-209ENST00000554872 PRKG1Q13976 671 aa19.76■□□□□ 0.75
CCDC88C-209ENST00000554872 PDE3AQ14432 1141 aa19.76■□□□□ 0.75
CCDC88C-209ENST00000554872 DIXDC1Q155Q3 683 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms