RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 TESPA1A2RU30 521 aaPredicted RBP14.34□□□□□ -0.11
VPS33B-204ENST00000554660 F6X3S4 739 aa14.34□□□□□ -0.11
VPS33B-204ENST00000554660 SPDYE2Q495Y8 402 aa14.34□□□□□ -0.11
VPS33B-204ENST00000554660 NCBP3Q53F19 620 aaKnown RBP14.34□□□□□ -0.11
VPS33B-204ENST00000554660 EPHA10Q5JZY3 1008 aa14.34□□□□□ -0.11
VPS33B-204ENST00000554660 TDRD3Q9H7E2 651 aaKnown RBP14.34□□□□□ -0.11
VPS33B-204ENST00000554660 ZNF70Q9UC06 446 aaPredicted RBP14.34□□□□□ -0.11
VPS33B-204ENST00000554660 NOP58Q9Y2X3 529 aaKnown RBP14.34□□□□□ -0.11
VPS33B-204ENST00000554660 VGLL4Q14135 290 aa14.33□□□□□ -0.12
VPS33B-204ENST00000554660 MFSD14BQ5SR56 506 aa14.33□□□□□ -0.12
VPS33B-204ENST00000554660 LMBR1LQ6UX01 489 aa14.33□□□□□ -0.12
VPS33B-204ENST00000554660 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.33□□□□□ -0.12
VPS33B-204ENST00000554660 BRI3BPQ8WY22 251 aa14.33□□□□□ -0.12
VPS33B-204ENST00000554660 ZNF333Q96JL9 665 aa14.33□□□□□ -0.12
VPS33B-204ENST00000554660 MS4A4AQ96JQ5 239 aa14.33□□□□□ -0.12
VPS33B-204ENST00000554660 TTF2Q9UNY4 1162 aaKnown RBP14.33□□□□□ -0.12
VPS33B-204ENST00000554660 PTCH2Q9Y6C5 1203 aa14.33□□□□□ -0.12
VPS33B-204ENST00000554660 CCL15-CCL14A0A0B4J2E2 113 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 TCP10L2B9ZVM9 353 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 MYCP01106 439 aaPredicted RBP14.32□□□□□ -0.12
VPS33B-204ENST00000554660 GYG1P46976 350 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 FXR1P51114 621 aaKnown RBP eCLIP14.32□□□□□ -0.12
VPS33B-204ENST00000554660 TNFAIP1Q13829 316 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 TAF1CQ15572 869 aaPredicted RBP14.32□□□□□ -0.12
VPS33B-204ENST00000554660 CCL15Q16663 113 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 CCDC27Q2M243 656 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 CCDC57Q2TAC2 916 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 TAF7LQ5H9L4 462 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 LDHAL6AQ6ZMR3 332 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.32□□□□□ -0.12
VPS33B-204ENST00000554660 EXOC6Q8TAG9 804 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 OTUD5Q96G74 571 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 TEPSINQ96N21 525 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 IPO9Q96P70 1041 aaKnown RBP14.32□□□□□ -0.12
VPS33B-204ENST00000554660 TMEM39BQ9GZU3 492 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 CNNM1Q9NRU3 951 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 FAM205AQ6ZU69 1335 aa14.32□□□□□ -0.12
VPS33B-204ENST00000554660 SLC9C1Q4G0N8 1177 aa14.31□□□□□ -0.12
VPS33B-204ENST00000554660 BEND3Q5T5X7 828 aa14.31□□□□□ -0.12
VPS33B-204ENST00000554660 TRMT2AQ8IZ69 625 aaKnown RBP14.31□□□□□ -0.12
VPS33B-204ENST00000554660 FAM43AQ8N2R8 423 aa14.31□□□□□ -0.12
VPS33B-204ENST00000554660 SERPINA10Q9UK55 444 aa14.31□□□□□ -0.12
VPS33B-204ENST00000554660 KIAA0100Q14667 2235 aaKnown RBP14.3□□□□□ -0.12
VPS33B-204ENST00000554660 GRIK5Q16478 980 aa14.3□□□□□ -0.12
VPS33B-204ENST00000554660 DZIP1LQ8IYY4 767 aaKnown RBP14.3□□□□□ -0.12
VPS33B-204ENST00000554660 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.3□□□□□ -0.12
VPS33B-204ENST00000554660 TDRD7Q8NHU6 1098 aaKnown RBP14.3□□□□□ -0.12
VPS33B-204ENST00000554660 TMEM106CQ9BVX2 250 aa14.3□□□□□ -0.12
VPS33B-204ENST00000554660 IL16Q14005 1332 aa14.3□□□□□ -0.12
VPS33B-204ENST00000554660 GRM8O00222 908 aa14.29□□□□□ -0.12
VPS33B-204ENST00000554660 VAMP4O75379 141 aa14.29□□□□□ -0.12
VPS33B-204ENST00000554660 CRKP46108 304 aa14.29□□□□□ -0.12
VPS33B-204ENST00000554660 GTF2A2P52657 109 aa14.29□□□□□ -0.12
VPS33B-204ENST00000554660 CACNB3P54284 484 aa14.29□□□□□ -0.12
VPS33B-204ENST00000554660 SH3TC2Q8TF17 1288 aa14.29□□□□□ -0.12
VPS33B-204ENST00000554660 ARHGAP39Q9C0H5 1083 aa14.29□□□□□ -0.12
VPS33B-204ENST00000554660 ZFYVE28Q9HCC9 887 aa14.29□□□□□ -0.12
VPS33B-204ENST00000554660 IQSEC3Q9UPP2 1182 aaPredicted RBP14.29□□□□□ -0.12
VPS33B-204ENST00000554660 COLQQ9Y215 455 aaPredicted RBP14.29□□□□□ -0.12
VPS33B-204ENST00000554660 CSADQ9Y600 493 aa14.29□□□□□ -0.12
VPS33B-204ENST00000554660 ECM2O94769 699 aaPredicted RBP14.28□□□□□ -0.12
VPS33B-204ENST00000554660 HIBADHP31937 336 aaKnown RBP14.28□□□□□ -0.12
VPS33B-204ENST00000554660 MAP3K9P80192 1104 aa14.28□□□□□ -0.12
VPS33B-204ENST00000554660 EXOSC9Q06265 439 aaKnown RBP14.28□□□□□ -0.12
VPS33B-204ENST00000554660 SLC4A8Q2Y0W8 1093 aa14.28□□□□□ -0.12
VPS33B-204ENST00000554660 CDCA7LQ96GN5 454 aa14.28□□□□□ -0.12
VPS33B-204ENST00000554660 FAM84BQ96KN1 310 aaPredicted RBP14.28□□□□□ -0.12
VPS33B-204ENST00000554660 PUS3Q9BZE2 481 aaKnown RBP14.28□□□□□ -0.12
VPS33B-204ENST00000554660 SALL2Q9Y467 1007 aaPredicted RBP14.28□□□□□ -0.12
VPS33B-204ENST00000554660 CACNA1FO60840 1977 aa14.27□□□□□ -0.12
VPS33B-204ENST00000554660 SPDYE5A6NIY4 337 aa14.27□□□□□ -0.13
VPS33B-204ENST00000554660 TNNI2P48788 182 aa14.27□□□□□ -0.13
VPS33B-204ENST00000554660 SLFN5Q08AF3 891 aa14.27□□□□□ -0.13
VPS33B-204ENST00000554660 CHAF1AQ13111 956 aaPredicted RBP14.27□□□□□ -0.13
VPS33B-204ENST00000554660 NBPF11Q86T75 865 aa14.27□□□□□ -0.13
VPS33B-204ENST00000554660 SNCAIPQ9Y6H5 919 aa14.27□□□□□ -0.13
VPS33B-204ENST00000554660 AAMPQ13685 434 aa14.26□□□□□ -0.13
VPS33B-204ENST00000554660 UBE4AQ14139 1066 aa14.26□□□□□ -0.13
VPS33B-204ENST00000554660 CENPQQ7L2Z9 268 aaPredicted RBP14.26□□□□□ -0.13
VPS33B-204ENST00000554660 SUCLG2Q96I99 432 aa14.26□□□□□ -0.13
VPS33B-204ENST00000554660 WRNIP1Q96S55 665 aa14.26□□□□□ -0.13
VPS33B-204ENST00000554660 C9orf78Q9NZ63 289 aaPredicted RBP14.26□□□□□ -0.13
VPS33B-204ENST00000554660 BTBD19C9JJ37 291 aa14.25□□□□□ -0.13
VPS33B-204ENST00000554660 E9PSI1 815 aa14.25□□□□□ -0.13
VPS33B-204ENST00000554660 LACTBP83111 547 aaPredicted RBP14.25□□□□□ -0.13
VPS33B-204ENST00000554660 ARHGEF6Q15052 776 aa14.25□□□□□ -0.13
VPS33B-204ENST00000554660 SLC4A10Q6U841 1118 aa14.25□□□□□ -0.13
VPS33B-204ENST00000554660 ZKSCAN4Q969J2 545 aaPredicted RBP14.25□□□□□ -0.13
VPS33B-204ENST00000554660 BACH2Q9BYV9 841 aa14.25□□□□□ -0.13
VPS33B-204ENST00000554660 H0YGN5 161 aa14.24□□□□□ -0.13
VPS33B-204ENST00000554660 IRF6O14896 467 aa14.24□□□□□ -0.13
VPS33B-204ENST00000554660 TLR2O60603 784 aa14.24□□□□□ -0.13
VPS33B-204ENST00000554660 CETPP11597 493 aa14.24□□□□□ -0.13
VPS33B-204ENST00000554660 VPS37DQ86XT2 251 aa14.24□□□□□ -0.13
VPS33B-204ENST00000554660 KAZALD1Q96I82 304 aa14.24□□□□□ -0.13
VPS33B-204ENST00000554660 SZT2Q5T011 3432 aa14.24□□□□□ -0.13
VPS33B-204ENST00000554660 SNAPC2Q13487 334 aa14.23□□□□□ -0.13
VPS33B-204ENST00000554660 KIF22Q14807 665 aa14.23□□□□□ -0.13
VPS33B-204ENST00000554660 ERO1BQ86YB8 467 aa14.23□□□□□ -0.13
VPS33B-204ENST00000554660 TEKT1Q969V4 418 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms