RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 CACNB3P54284 484 aa14.31□□□□□ -0.12
CCDC88C-208ENST00000554165 PRKG1Q13976 671 aa14.31□□□□□ -0.12
CCDC88C-208ENST00000554165 PDE3AQ14432 1141 aa14.31□□□□□ -0.12
CCDC88C-208ENST00000554165 DIXDC1Q155Q3 683 aa14.31□□□□□ -0.12
CCDC88C-208ENST00000554165 CDAN1Q8IWY9 1227 aa14.31□□□□□ -0.12
CCDC88C-208ENST00000554165 C2orf69Q8N8R5 385 aa14.31□□□□□ -0.12
CCDC88C-208ENST00000554165 ZIC5Q96T25 663 aa14.31□□□□□ -0.12
CCDC88C-208ENST00000554165 GNL3LQ9NVN8 582 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-208ENST00000554165 ZNF70Q9UC06 446 aaPredicted RBP14.31□□□□□ -0.12
CCDC88C-208ENST00000554165 ARAP2Q8WZ64 1704 aa14.31□□□□□ -0.12
CCDC88C-208ENST00000554165 UBE2Q2LH0YL09 131 aa14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 APBB1O00213 710 aa14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 HSPA1AP0DMV8 641 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 HSPA1BP0DMV9 641 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 TNNI3KQ59H18 835 aa14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 APOBEC3FQ8IUX4 373 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 WDR66Q8TBY9 1149 aa14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 DBNDD2Q9BQY9 259 aa14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 DEFB129Q9H1M3 183 aa14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 TLR7Q9NYK1 1049 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 FPGT-TNNI3KV9GXZ4 949 aa14.3□□□□□ -0.12
CCDC88C-208ENST00000554165 MYH13Q9UKX3 1938 aa14.29□□□□□ -0.12
CCDC88C-208ENST00000554165 SPDYE2Q495Y8 402 aa14.29□□□□□ -0.12
CCDC88C-208ENST00000554165 GORABQ5T7V8 394 aa14.29□□□□□ -0.12
CCDC88C-208ENST00000554165 APOBEC3HQ6NTF7 200 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-208ENST00000554165 TBC1D9Q6ZT07 1266 aa14.29□□□□□ -0.12
CCDC88C-208ENST00000554165 CCDC8Q9H0W5 538 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-208ENST00000554165 HMG20BQ9P0W2 317 aa14.29□□□□□ -0.12
CCDC88C-208ENST00000554165 DENND2AQ9ULE3 1009 aa14.29□□□□□ -0.12
CCDC88C-208ENST00000554165 TCP10L2B9ZVM9 353 aa14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 SEMA3EO15041 775 aa14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 MYO1BO43795 1136 aa14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 RASA3Q14644 834 aa14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 NBPF12Q5TAG4 269 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 TEKT1Q969V4 418 aa14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 EAF2Q96CJ1 260 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 ZDHHC15Q96MV8 337 aa14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 BCL11AQ9H165 835 aa14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 SNRKQ9NRH2 765 aa14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 DAGLAQ9Y4D2 1042 aa14.28□□□□□ -0.12
CCDC88C-208ENST00000554165 SSC5DA1L4H1 1573 aa14.27□□□□□ -0.12
CCDC88C-208ENST00000554165 LDHBP07195 334 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 MCAMP43121 646 aa14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 RRP1P56182 461 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 HDLBPQ00341 1268 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 TTLL12Q14166 644 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 RGMBQ6NW40 437 aa14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 ZNF384Q8TF68 577 aa14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 TMEM39BQ9GZU3 492 aa14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 IL1RAPL2Q9NP60 686 aa14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 GPR108Q9NPR9 543 aa14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 ABCF2Q9UG63 623 aa14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 DBNLQ9UJU6 430 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 SUGT1Q9Y2Z0 365 aa14.27□□□□□ -0.13
CCDC88C-208ENST00000554165 SALL1Q9NSC2 1324 aa14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 FAM155AB1AL88 458 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 FOXN1O15353 648 aa14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 ARID4AP29374 1257 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 ECE1P42892 770 aa14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 ZNF157P51786 506 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 RPAP2Q8IXW5 612 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 SPATA5Q8NB90 893 aa14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 HHIPL1Q96JK4 782 aa14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 MRIQ9BWK5 157 aa14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 WBP1LQ9NX94 342 aa14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 ECM29Q5VYK3 1845 aa14.26□□□□□ -0.13
CCDC88C-208ENST00000554165 HHIPL2Q6UWX4 724 aa14.25□□□□□ -0.13
CCDC88C-208ENST00000554165 RHPN1Q8TCX5 695 aa14.25□□□□□ -0.13
CCDC88C-208ENST00000554165 TEPSINQ96N21 525 aa14.25□□□□□ -0.13
CCDC88C-208ENST00000554165 NDUFB9Q9Y6M9 179 aa14.25□□□□□ -0.13
CCDC88C-208ENST00000554165 PAPPA2Q9BXP8 1791 aa14.24□□□□□ -0.13
CCDC88C-208ENST00000554165 MAST3O60307 1309 aa14.24□□□□□ -0.13
CCDC88C-208ENST00000554165 PDS5AQ29RF7 1337 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-208ENST00000554165 ZBTB22O15209 634 aa14.24□□□□□ -0.13
CCDC88C-208ENST00000554165 NF2P35240 595 aa14.24□□□□□ -0.13
CCDC88C-208ENST00000554165 TTC39AQ5SRH9 613 aa14.24□□□□□ -0.13
CCDC88C-208ENST00000554165 CDC42EP5Q6NZY7 148 aa14.24□□□□□ -0.13
CCDC88C-208ENST00000554165 AACSQ86V21 672 aa14.24□□□□□ -0.13
CCDC88C-208ENST00000554165 ANGEL1Q9UNK9 670 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-208ENST00000554165 UQCRFS1P1P0C7P4 283 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 ZAP70P43403 619 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 FKBP1BP68106 108 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 MECOMQ03112 1051 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 NFIAQ12857 509 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 MKRN3Q13064 507 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 DZIP1Q86YF9 867 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 RASAL3Q86YV0 1011 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 ZFPM1Q8IX07 1006 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 CLMNQ96JQ2 1002 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 CRBNQ96SW2 442 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 TSKSQ9UJT2 592 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 PCDHB15Q9Y5E8 787 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 PPP2R3BQ9Y5P8 575 aa14.23□□□□□ -0.13
CCDC88C-208ENST00000554165 AKAP11Q9UKA4 1901 aa14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 SMARCA5O60264 1052 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 HMMRO75330 724 aa14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 USP2O75604 605 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 CYP2E1P05181 493 aaPredicted RBP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms