RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 HSP90AB4PQ58FF6 505 aa18.91■□□□□ 0.62
SHMT2-204ENST00000553324 DEFB129Q9H1M3 183 aa18.91■□□□□ 0.62
SHMT2-204ENST00000553324 HMMRO75330 724 aa18.9■□□□□ 0.62
SHMT2-204ENST00000553324 ADORA1P30542 326 aa18.9■□□□□ 0.62
SHMT2-204ENST00000553324 CYP4F22Q6NT55 531 aa18.9■□□□□ 0.62
SHMT2-204ENST00000553324 HHIPL2Q6UWX4 724 aa18.9■□□□□ 0.62
SHMT2-204ENST00000553324 ERC1Q8IUD2 1116 aa18.9■□□□□ 0.62
SHMT2-204ENST00000553324 CCDC102AQ96A19 550 aa18.9■□□□□ 0.62
SHMT2-204ENST00000553324 PDS5AQ29RF7 1337 aaKnown RBP18.9■□□□□ 0.62
SHMT2-204ENST00000553324 SALL1Q9NSC2 1324 aa18.9■□□□□ 0.62
SHMT2-204ENST00000553324 LDHBP07195 334 aaKnown RBP18.89■□□□□ 0.61
SHMT2-204ENST00000553324 SUPT20HL1Q3ZLR7 823 aa18.89■□□□□ 0.61
SHMT2-204ENST00000553324 RGMBQ6NW40 437 aa18.89■□□□□ 0.61
SHMT2-204ENST00000553324 YTHDC1Q96MU7 727 aaKnown RBP18.89■□□□□ 0.61
SHMT2-204ENST00000553324 ZDHHC15Q96MV8 337 aa18.89■□□□□ 0.61
SHMT2-204ENST00000553324 VEZTQ9HBM0 779 aa18.89■□□□□ 0.61
SHMT2-204ENST00000553324 TRPM7Q96QT4 1865 aa18.88■□□□□ 0.61
SHMT2-204ENST00000553324 CLRN2A0PK11 232 aa18.88■□□□□ 0.61
SHMT2-204ENST00000553324 GRIK5Q16478 980 aa18.88■□□□□ 0.61
SHMT2-204ENST00000553324 SPDYE2Q495Y8 402 aa18.88■□□□□ 0.61
SHMT2-204ENST00000553324 SPTY2D1Q68D10 685 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-204ENST00000553324 ZNF70Q9UC06 446 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-204ENST00000553324 SCAF8Q9UPN6 1271 aaKnown RBP18.88■□□□□ 0.61
SHMT2-204ENST00000553324 PCDHAC2Q9Y5I4 1007 aa18.88■□□□□ 0.61
SHMT2-204ENST00000553324 COL1A1P02452 1464 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-204ENST00000553324 ZNF646O15015 1829 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-204ENST00000553324 UQCRFS1P1P0C7P4 283 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 HSPA1AP0DMV8 641 aaKnown RBP18.87■□□□□ 0.61
SHMT2-204ENST00000553324 HSPA1BP0DMV9 641 aaKnown RBP18.87■□□□□ 0.61
SHMT2-204ENST00000553324 TNNI2P48788 182 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 NOGQ13253 232 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 GRM1Q13255 1194 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 TNNI3KQ59H18 835 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 CCDC158Q5M9N0 1113 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 PRAMEF18Q5VWM3 479 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 ARMC9Q7Z3E5 817 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 SLF2Q8IX21 1173 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 AIDAQ96BJ3 306 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 TDRD3Q9H7E2 651 aaKnown RBP18.87■□□□□ 0.61
SHMT2-204ENST00000553324 FPGT-TNNI3KV9GXZ4 949 aa18.87■□□□□ 0.61
SHMT2-204ENST00000553324 POLR2AP24928 1970 aaKnown RBP18.86■□□□□ 0.61
SHMT2-204ENST00000553324 ZNF157P51786 506 aaPredicted RBP18.86■□□□□ 0.61
SHMT2-204ENST00000553324 RASGRF1Q13972 1273 aa18.86■□□□□ 0.61
SHMT2-204ENST00000553324 TTLL12Q14166 644 aaPredicted RBP18.86■□□□□ 0.61
SHMT2-204ENST00000553324 BEGAINQ9BUH8 593 aa18.86■□□□□ 0.61
SHMT2-204ENST00000553324 TMOD2Q9NZR1 351 aa18.86■□□□□ 0.61
SHMT2-204ENST00000553324 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.86■□□□□ 0.61
SHMT2-204ENST00000553324 PPP1R12BO60237 982 aaPredicted RBP18.85■□□□□ 0.61
SHMT2-204ENST00000553324 RASA3Q14644 834 aa18.85■□□□□ 0.61
SHMT2-204ENST00000553324 C20orf194Q5TEA3 1177 aa18.85■□□□□ 0.61
SHMT2-204ENST00000553324 FKBP1CQ5VVH2 108 aa18.85■□□□□ 0.61
SHMT2-204ENST00000553324 APOBEC3HQ6NTF7 200 aaKnown RBP18.85■□□□□ 0.61
SHMT2-204ENST00000553324 WBP1LQ9NX94 342 aa18.85■□□□□ 0.61
SHMT2-204ENST00000553324 UNCXA6NJT0 531 aa18.84■□□□□ 0.61
SHMT2-204ENST00000553324 ARID4AP29374 1257 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-204ENST00000553324 PRDX5P30044 214 aa18.84■□□□□ 0.61
SHMT2-204ENST00000553324 SPATA5Q8NB90 893 aa18.84■□□□□ 0.61
SHMT2-204ENST00000553324 ABCF2Q9UG63 623 aa18.84■□□□□ 0.61
SHMT2-204ENST00000553324 RAB11FIP3O75154 756 aa18.83■□□□□ 0.6
SHMT2-204ENST00000553324 TTC39AQ5SRH9 613 aa18.83■□□□□ 0.6
SHMT2-204ENST00000553324 ERICH6Q7L0X2 663 aa18.83■□□□□ 0.6
SHMT2-204ENST00000553324 REM2Q8IYK8 340 aaPredicted RBP18.83■□□□□ 0.6
SHMT2-204ENST00000553324 ZNF512BQ96KM6 892 aaPredicted RBP18.83■□□□□ 0.6
SHMT2-204ENST00000553324 UBE2Q2LH0YL09 131 aa18.82■□□□□ 0.6
SHMT2-204ENST00000553324 IGSF3O75054 1194 aa18.82■□□□□ 0.6
SHMT2-204ENST00000553324 FAM83AQ86UY5 434 aa18.82■□□□□ 0.6
SHMT2-204ENST00000553324 DZIP1Q86YF9 867 aaKnown RBP18.82■□□□□ 0.6
SHMT2-204ENST00000553324 FAM163AQ96GL9 167 aaPredicted RBP18.82■□□□□ 0.6
SHMT2-204ENST00000553324 HMG20BQ9P0W2 317 aa18.82■□□□□ 0.6
SHMT2-204ENST00000553324 EXOC6BQ9Y2D4 811 aa18.82■□□□□ 0.6
SHMT2-204ENST00000553324 TCP10L2B9ZVM9 353 aa18.81■□□□□ 0.6
SHMT2-204ENST00000553324 AOC2O75106 756 aa18.81■□□□□ 0.6
SHMT2-204ENST00000553324 MAP3K11Q16584 847 aa18.81■□□□□ 0.6
SHMT2-204ENST00000553324 HOOK2Q96ED9 719 aa18.81■□□□□ 0.6
SHMT2-204ENST00000553324 KIF1BPQ96EK5 621 aa18.81■□□□□ 0.6
SHMT2-204ENST00000553324 DBNDD2Q9BQY9 259 aa18.81■□□□□ 0.6
SHMT2-204ENST00000553324 AOX1Q06278 1338 aa18.8■□□□□ 0.6
SHMT2-204ENST00000553324 FAM155AB1AL88 458 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-204ENST00000553324 CA12O43570 354 aa18.8■□□□□ 0.6
SHMT2-204ENST00000553324 LDHCP07864 332 aa18.8■□□□□ 0.6
SHMT2-204ENST00000553324 SLC10A3P09131 477 aa18.8■□□□□ 0.6
SHMT2-204ENST00000553324 CTCFP49711 727 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-204ENST00000553324 GSTO1P78417 241 aa18.8■□□□□ 0.6
SHMT2-204ENST00000553324 LDLRAD1Q5T700 205 aa18.8■□□□□ 0.6
SHMT2-204ENST00000553324 NBPF12Q5TAG4 269 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-204ENST00000553324 SIRT2Q8IXJ6 389 aa18.8■□□□□ 0.6
SHMT2-204ENST00000553324 CLASRPQ8N2M8 674 aaKnown RBP18.8■□□□□ 0.6
SHMT2-204ENST00000553324 RHPN1Q8TCX5 695 aa18.8■□□□□ 0.6
SHMT2-204ENST00000553324 EAF2Q96CJ1 260 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-204ENST00000553324 ANGEL1Q9UNK9 670 aaKnown RBP18.8■□□□□ 0.6
SHMT2-204ENST00000553324 DAGLAQ9Y4D2 1042 aa18.8■□□□□ 0.6
SHMT2-204ENST00000553324 MCAMP43121 646 aa18.79■□□□□ 0.6
SHMT2-204ENST00000553324 IREB2P48200 963 aaKnown RBP18.79■□□□□ 0.6
SHMT2-204ENST00000553324 RRP1P56182 461 aaKnown RBP18.79■□□□□ 0.6
SHMT2-204ENST00000553324 PRKG1Q13976 671 aa18.79■□□□□ 0.6
SHMT2-204ENST00000553324 DIXDC1Q155Q3 683 aa18.79■□□□□ 0.6
SHMT2-204ENST00000553324 MOB2Q70IA6 237 aa18.79■□□□□ 0.6
SHMT2-204ENST00000553324 CCDC8Q9H0W5 538 aaPredicted RBP18.79■□□□□ 0.6
SHMT2-204ENST00000553324 CDC42EP5Q6NZY7 148 aa18.78■□□□□ 0.6
SHMT2-204ENST00000553324 AACSQ86V21 672 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms