RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ZNF804AQ7Z570 1209 aa16.57■□□□□ 0.24
VPS29-211ENST00000553128 APAF1O14727 1248 aa16.56■□□□□ 0.24
VPS29-211ENST00000553128 UBE2Q1Q7Z7E8 422 aa16.56■□□□□ 0.24
VPS29-211ENST00000553128 ANKRD18BA2A2Z9 1011 aa16.55■□□□□ 0.24
VPS29-211ENST00000553128 SOX1O00570 391 aaPredicted RBP16.55■□□□□ 0.24
VPS29-211ENST00000553128 TNFAIP1Q13829 316 aa16.55■□□□□ 0.24
VPS29-211ENST00000553128 TTF2Q9UNY4 1162 aaKnown RBP16.55■□□□□ 0.24
VPS29-211ENST00000553128 SNCAIPQ9Y6H5 919 aa16.55■□□□□ 0.24
VPS29-211ENST00000553128 SPDYE5A6NIY4 337 aa16.54■□□□□ 0.24
VPS29-211ENST00000553128 KIF22Q14807 665 aa16.54■□□□□ 0.24
VPS29-211ENST00000553128 GRIK5Q16478 980 aa16.54■□□□□ 0.24
VPS29-211ENST00000553128 MFSD14BQ5SR56 506 aa16.54■□□□□ 0.24
VPS29-211ENST00000553128 DZIP1LQ8IYY4 767 aaKnown RBP16.54■□□□□ 0.24
VPS29-211ENST00000553128 TSR2Q969E8 191 aaKnown RBP16.54■□□□□ 0.24
VPS29-211ENST00000553128 ZKSCAN4Q969J2 545 aaPredicted RBP16.54■□□□□ 0.24
VPS29-211ENST00000553128 TRIM47Q96LD4 638 aa16.54■□□□□ 0.24
VPS29-211ENST00000553128 CSADQ9Y600 493 aa16.54■□□□□ 0.24
VPS29-211ENST00000553128 FAM205AQ6ZU69 1335 aa16.53■□□□□ 0.24
VPS29-211ENST00000553128 IRF6O14896 467 aa16.53■□□□□ 0.24
VPS29-211ENST00000553128 PLIN1O60240 522 aa16.53■□□□□ 0.24
VPS29-211ENST00000553128 CACNB3P54284 484 aa16.53■□□□□ 0.24
VPS29-211ENST00000553128 FOXO4P98177 505 aa16.53■□□□□ 0.24
VPS29-211ENST00000553128 ZNF594Q96JF6 807 aaPredicted RBP16.53■□□□□ 0.24
VPS29-211ENST00000553128 CPA4Q9UI42 421 aa16.53■□□□□ 0.24
VPS29-211ENST00000553128 SERPINA10Q9UK55 444 aa16.53■□□□□ 0.24
VPS29-211ENST00000553128 ARAP2Q8WZ64 1704 aa16.53■□□□□ 0.24
VPS29-211ENST00000553128 CETPP11597 493 aa16.52■□□□□ 0.24
VPS29-211ENST00000553128 OSBPP22059 807 aa16.52■□□□□ 0.24
VPS29-211ENST00000553128 C17orf99Q6UX52 265 aa16.52■□□□□ 0.24
VPS29-211ENST00000553128 LRCH3Q96II8 777 aa16.52■□□□□ 0.24
VPS29-211ENST00000553128 SRRDQ9UH36 339 aa16.52■□□□□ 0.24
VPS29-211ENST00000553128 GNRH1P01148 92 aa16.51■□□□□ 0.23
VPS29-211ENST00000553128 SLC4A2P04920 1241 aa16.51■□□□□ 0.23
VPS29-211ENST00000553128 CCL5P13501 91 aa16.51■□□□□ 0.23
VPS29-211ENST00000553128 PSMC4P43686 418 aa16.51■□□□□ 0.23
VPS29-211ENST00000553128 CRKP46108 304 aa16.51■□□□□ 0.23
VPS29-211ENST00000553128 GYG1P46976 350 aa16.51■□□□□ 0.23
VPS29-211ENST00000553128 GJA8P48165 433 aa16.51■□□□□ 0.23
VPS29-211ENST00000553128 CALD1Q05682 793 aaKnown RBP16.51■□□□□ 0.23
VPS29-211ENST00000553128 IFIT5Q13325 482 aaKnown RBP16.51■□□□□ 0.23
VPS29-211ENST00000553128 TDRD7Q8NHU6 1098 aaKnown RBP16.51■□□□□ 0.23
VPS29-211ENST00000553128 STK31Q9BXU1 1019 aa16.51■□□□□ 0.23
VPS29-211ENST00000553128 CHMP3Q9Y3E7 222 aa16.51■□□□□ 0.23
VPS29-211ENST00000553128 RIPOR2Q9Y4F9 1068 aa16.51■□□□□ 0.23
VPS29-211ENST00000553128 UNC80Q8N2C7 3258 aa16.5■□□□□ 0.23
VPS29-211ENST00000553128 ZBTB7BO15156 539 aaPredicted RBP16.5■□□□□ 0.23
VPS29-211ENST00000553128 GRK4P32298 578 aa16.5■□□□□ 0.23
VPS29-211ENST00000553128 PRMT2P55345 433 aa16.5■□□□□ 0.23
VPS29-211ENST00000553128 EPHA10Q5JZY3 1008 aa16.5■□□□□ 0.23
VPS29-211ENST00000553128 ERO1BQ86YB8 467 aa16.5■□□□□ 0.23
VPS29-211ENST00000553128 WRNIP1Q96S55 665 aa16.5■□□□□ 0.23
VPS29-211ENST00000553128 ZCCHC17Q9NP64 241 aaKnown RBP16.5■□□□□ 0.23
VPS29-211ENST00000553128 GJB1P08034 283 aa16.49■□□□□ 0.23
VPS29-211ENST00000553128 FLIIQ13045 1269 aa16.49■□□□□ 0.23
VPS29-211ENST00000553128 SNAPC2Q13487 334 aa16.49■□□□□ 0.23
VPS29-211ENST00000553128 RAET1EQ8TD07 263 aa16.49■□□□□ 0.23
VPS29-211ENST00000553128 HTATIP2Q9BUP3 242 aa16.49■□□□□ 0.23
VPS29-211ENST00000553128 RNF208Q9H0X6 261 aa16.49■□□□□ 0.23
VPS29-211ENST00000553128 MYH16Q9H6N6 1097 aa16.49■□□□□ 0.23
VPS29-211ENST00000553128 ADGRA2Q96PE1 1338 aa16.48■□□□□ 0.23
VPS29-211ENST00000553128 WDHD1O75717 1129 aaPredicted RBP16.48■□□□□ 0.23
VPS29-211ENST00000553128 TNNI2P48788 182 aa16.48■□□□□ 0.23
VPS29-211ENST00000553128 PPIL2Q13356 520 aa16.48■□□□□ 0.23
VPS29-211ENST00000553128 LMBR1LQ6UX01 489 aa16.48■□□□□ 0.23
VPS29-211ENST00000553128 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.48■□□□□ 0.23
VPS29-211ENST00000553128 LINS1Q8NG48 757 aa16.48■□□□□ 0.23
VPS29-211ENST00000553128 NKX2-3Q8TAU0 364 aa16.48■□□□□ 0.23
VPS29-211ENST00000553128 DNAAF4Q8WXU2 420 aa16.48■□□□□ 0.23
VPS29-211ENST00000553128 FAM84BQ96KN1 310 aaPredicted RBP16.48■□□□□ 0.23
VPS29-211ENST00000553128 CHMP4AQ9BY43 222 aa16.48■□□□□ 0.23
VPS29-211ENST00000553128 MYPNQ86TC9 1320 aa16.47■□□□□ 0.23
VPS29-211ENST00000553128 FMNL1O95466 1100 aaPredicted RBP16.47■□□□□ 0.23
VPS29-211ENST00000553128 PRKCZQ05513 592 aa16.47■□□□□ 0.23
VPS29-211ENST00000553128 TWISTNBQ3B726 338 aaPredicted RBP16.47■□□□□ 0.23
VPS29-211ENST00000553128 LDHAL6AQ6ZMR3 332 aa16.47■□□□□ 0.23
VPS29-211ENST00000553128 U2AF1L4Q8WU68 220 aaKnown RBP16.47■□□□□ 0.23
VPS29-211ENST00000553128 UNC93B1Q9H1C4 597 aa16.47■□□□□ 0.23
VPS29-211ENST00000553128 IQSEC3Q9UPP2 1182 aaPredicted RBP16.47■□□□□ 0.23
VPS29-211ENST00000553128 PDHXO00330 501 aa16.46■□□□□ 0.23
VPS29-211ENST00000553128 FARP2O94887 1054 aaPredicted RBP16.46■□□□□ 0.23
VPS29-211ENST00000553128 HIBADHP31937 336 aaKnown RBP16.46■□□□□ 0.23
VPS29-211ENST00000553128 INPP5BP32019 993 aa16.46■□□□□ 0.23
VPS29-211ENST00000553128 FKBP5Q13451 457 aaPredicted RBP16.46■□□□□ 0.23
VPS29-211ENST00000553128 MOGSQ13724 837 aa16.46■□□□□ 0.23
VPS29-211ENST00000553128 MIGA2Q7L4E1 593 aa16.46■□□□□ 0.23
VPS29-211ENST00000553128 CNNM1Q9NRU3 951 aa16.46■□□□□ 0.23
VPS29-211ENST00000553128 BIN2Q9UBW5 565 aaPredicted RBP16.46■□□□□ 0.23
VPS29-211ENST00000553128 STAP2Q9UGK3 403 aa16.46■□□□□ 0.23
VPS29-211ENST00000553128 GABRQQ9UN88 632 aa16.46■□□□□ 0.23
VPS29-211ENST00000553128 NR2E3Q9Y5X4 410 aa16.46■□□□□ 0.23
VPS29-211ENST00000553128 DDX10Q13206 875 aaKnown RBP16.45■□□□□ 0.22
VPS29-211ENST00000553128 ANKRD23Q86SG2 305 aa16.45■□□□□ 0.22
VPS29-211ENST00000553128 PUS3Q9BZE2 481 aaKnown RBP16.45■□□□□ 0.22
VPS29-211ENST00000553128 CUL9Q8IWT3 2517 aa16.45■□□□□ 0.22
VPS29-211ENST00000553128 F6X3S4 739 aa16.44■□□□□ 0.22
VPS29-211ENST00000553128 PPATQ06203 517 aa16.44■□□□□ 0.22
VPS29-211ENST00000553128 CHAF1AQ13111 956 aaPredicted RBP16.44■□□□□ 0.22
VPS29-211ENST00000553128 A0A1W2PPC1 479 aa16.43■□□□□ 0.22
VPS29-211ENST00000553128 SGPL1O95470 568 aa16.43■□□□□ 0.22
VPS29-211ENST00000553128 HOXD10P28358 340 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms