RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 DZIP1Q86YF9 867 aaKnown RBP25.73■■□□□ 1.71
VPS29-206ENST00000549578 WDR90Q96KV7 1748 aa25.73■■□□□ 1.71
VPS29-206ENST00000549578 GSPT1P15170 499 aaKnown RBP25.73■■□□□ 1.71
VPS29-206ENST00000549578 LMOD1P29536 600 aaPredicted RBP25.73■■□□□ 1.71
VPS29-206ENST00000549578 MECOMQ03112 1051 aa25.73■■□□□ 1.71
VPS29-206ENST00000549578 OGFOD1Q8N543 542 aa25.73■■□□□ 1.71
VPS29-206ENST00000549578 TRIM6-TRIM34B2RNG4 842 aa25.72■■□□□ 1.71
VPS29-206ENST00000549578 ZNF384Q8TF68 577 aa25.72■■□□□ 1.71
VPS29-206ENST00000549578 ADAMTSL1Q8N6G6 1762 aa25.72■■□□□ 1.71
VPS29-206ENST00000549578 POTECB2RU33 542 aa25.71■■□□□ 1.71
VPS29-206ENST00000549578 DIXDC1Q155Q3 683 aa25.71■■□□□ 1.71
VPS29-206ENST00000549578 NSUN4Q96CB9 384 aaKnown RBP25.71■■□□□ 1.71
VPS29-206ENST00000549578 HDAC9Q9UKV0 1011 aa25.71■■□□□ 1.71
VPS29-206ENST00000549578 MAST3O60307 1309 aa25.7■■□□□ 1.71
VPS29-206ENST00000549578 MAST2Q6P0Q8 1798 aa25.7■■□□□ 1.71
VPS29-206ENST00000549578 H7C1D1 291 aa25.7■■□□□ 1.7
VPS29-206ENST00000549578 YY1P25490 414 aa25.7■■□□□ 1.7
VPS29-206ENST00000549578 ZNF280AP59817 542 aaPredicted RBP25.7■■□□□ 1.7
VPS29-206ENST00000549578 MAP3K12Q12852 859 aa25.7■■□□□ 1.7
VPS29-206ENST00000549578 KBTBD3Q8NAB2 608 aa25.7■■□□□ 1.7
VPS29-206ENST00000549578 EGFRP00533 1210 aa25.69■■□□□ 1.7
VPS29-206ENST00000549578 SAMD7Q7Z3H4 446 aa25.69■■□□□ 1.7
VPS29-206ENST00000549578 RILPL2Q969X0 211 aa25.69■■□□□ 1.7
VPS29-206ENST00000549578 EVI5LQ96CN4 794 aa25.69■■□□□ 1.7
VPS29-206ENST00000549578 NMRK2Q9NPI5 230 aa25.69■■□□□ 1.7
VPS29-206ENST00000549578 HACL1Q9UJ83 578 aa25.69■■□□□ 1.7
VPS29-206ENST00000549578 PCDHAC2Q9Y5I4 1007 aa25.69■■□□□ 1.7
VPS29-206ENST00000549578 CRKP46108 304 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 RBM26Q5T8P6 1007 aaKnown RBP25.68■■□□□ 1.7
VPS29-206ENST00000549578 MAGEB6Q8N7X4 407 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 FSD1Q9BTV5 496 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 RRAGCQ9HB90 399 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 MYOZ2Q9NPC6 264 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 SCN4AP35499 1836 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 IQCA1LA6NCM1 817 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 CHGBP05060 677 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 TBC1D10BQ4KMP7 808 aaPredicted RBP25.68■■□□□ 1.7
VPS29-206ENST00000549578 NAA16Q6N069 864 aaPredicted RBP25.68■■□□□ 1.7
VPS29-206ENST00000549578 CNTROBQ8N137 903 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 TEKT1Q969V4 418 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 SERPINA10Q9UK55 444 aa25.68■■□□□ 1.7
VPS29-206ENST00000549578 MYH2Q9UKX2 1941 aa25.67■■□□□ 1.7
VPS29-206ENST00000549578 PDE6AP16499 860 aa25.67■■□□□ 1.7
VPS29-206ENST00000549578 RBM5P52756 815 aaKnown RBP eCLIP25.67■■□□□ 1.7
VPS29-206ENST00000549578 CFAP100Q494V2 611 aa25.67■■□□□ 1.7
VPS29-206ENST00000549578 SLFNL1Q499Z3 407 aa25.67■■□□□ 1.7
VPS29-206ENST00000549578 SLC9C2Q5TAH2 1124 aa25.67■■□□□ 1.7
VPS29-206ENST00000549578 TRPM4Q8TD43 1214 aa25.67■■□□□ 1.7
VPS29-206ENST00000549578 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.67■■□□□ 1.7
VPS29-206ENST00000549578 MYH7P12883 1935 aa25.66■■□□□ 1.7
VPS29-206ENST00000549578 SDSP20132 328 aa25.66■■□□□ 1.7
VPS29-206ENST00000549578 EPHX2P34913 555 aa25.66■■□□□ 1.7
VPS29-206ENST00000549578 HDLBPQ00341 1268 aaKnown RBP25.66■■□□□ 1.7
VPS29-206ENST00000549578 TAF1DQ9H5J8 278 aaPredicted RBP25.66■■□□□ 1.7
VPS29-206ENST00000549578 ADARB2Q9NS39 739 aaKnown RBP25.66■■□□□ 1.7
VPS29-206ENST00000549578 GSTO1P78417 241 aa25.65■■□□□ 1.7
VPS29-206ENST00000549578 KIF4BQ2VIQ3 1234 aa25.65■■□□□ 1.7
VPS29-206ENST00000549578 ADGRA1Q86SQ6 560 aa25.65■■□□□ 1.7
VPS29-206ENST00000549578 DAGLAQ9Y4D2 1042 aa25.65■■□□□ 1.7
VPS29-206ENST00000549578 AK9Q5TCS8 1911 aa25.65■■□□□ 1.7
VPS29-206ENST00000549578 VEGFAP15692 232 aaPredicted RBP25.64■■□□□ 1.7
VPS29-206ENST00000549578 CYP7A1P22680 504 aa25.64■■□□□ 1.7
VPS29-206ENST00000549578 ADD2P35612 726 aa25.64■■□□□ 1.7
VPS29-206ENST00000549578 MMP14P50281 582 aa25.64■■□□□ 1.7
VPS29-206ENST00000549578 DLGAP5Q15398 846 aa25.64■■□□□ 1.7
VPS29-206ENST00000549578 HHIPL2Q6UWX4 724 aa25.64■■□□□ 1.7
VPS29-206ENST00000549578 MRIQ9BWK5 157 aa25.64■■□□□ 1.7
VPS29-206ENST00000549578 MROH7-TTC4A0A0A0MT08 1334 aa25.64■■□□□ 1.7
VPS29-206ENST00000549578 ZNF532Q9HCE3 1301 aa25.64■■□□□ 1.7
VPS29-206ENST00000549578 IGSF3O75054 1194 aa25.63■■□□□ 1.69
VPS29-206ENST00000549578 SLF2Q8IX21 1173 aa25.63■■□□□ 1.69
VPS29-206ENST00000549578 ZDHHC15Q96MV8 337 aa25.63■■□□□ 1.69
VPS29-206ENST00000549578 GPBP1L1Q9HC44 474 aaPredicted RBP25.63■■□□□ 1.69
VPS29-206ENST00000549578 GAKO14976 1311 aa25.63■■□□□ 1.69
VPS29-206ENST00000549578 TCRBV5S4A2TA0A5A2 114 aa25.63■■□□□ 1.69
VPS29-206ENST00000549578 HIRAP54198 1017 aaPredicted RBP25.63■■□□□ 1.69
VPS29-206ENST00000549578 ZSCAN25Q6NSZ9 544 aa25.63■■□□□ 1.69
VPS29-206ENST00000549578 FAM163AQ96GL9 167 aaPredicted RBP25.63■■□□□ 1.69
VPS29-206ENST00000549578 PRMT6Q96LA8 375 aaPredicted RBP25.63■■□□□ 1.69
VPS29-206ENST00000549578 SPDYE2BA6NHP3 402 aa25.62■■□□□ 1.69
VPS29-206ENST00000549578 WNT10BO00744 389 aa25.62■■□□□ 1.69
VPS29-206ENST00000549578 LDHCP07864 332 aa25.62■■□□□ 1.69
VPS29-206ENST00000549578 SPDYE6P0CI01 402 aa25.62■■□□□ 1.69
VPS29-206ENST00000549578 NBPF9Q3BBW0 867 aa25.62■■□□□ 1.69
VPS29-206ENST00000549578 BMP2KLQ5H9B9 411 aa25.62■■□□□ 1.69
VPS29-206ENST00000549578 APOBEC3HQ6NTF7 200 aaKnown RBP25.62■■□□□ 1.69
VPS29-206ENST00000549578 MTMR14Q8NCE2 650 aa25.62■■□□□ 1.69
VPS29-206ENST00000549578 ZBED3Q96IU2 234 aaPredicted RBP25.62■■□□□ 1.69
VPS29-206ENST00000549578 RNF113AO15541 343 aaKnown RBP25.61■■□□□ 1.69
VPS29-206ENST00000549578 BTDP43251 543 aa25.6■■□□□ 1.69
VPS29-206ENST00000549578 UBE3CQ15386 1083 aa25.6■■□□□ 1.69
VPS29-206ENST00000549578 EAPPQ56P03 285 aaPredicted RBP25.6■■□□□ 1.69
VPS29-206ENST00000549578 USP50Q70EL3 339 aaPredicted RBP25.6■■□□□ 1.69
VPS29-206ENST00000549578 MIGA1Q8NAN2 632 aa25.6■■□□□ 1.69
VPS29-206ENST00000549578 ASTN2O75129 1339 aaPredicted RBP25.6■■□□□ 1.69
VPS29-206ENST00000549578 ZFYP08048 801 aaPredicted RBP25.59■■□□□ 1.69
VPS29-206ENST00000549578 LRRFIP1Q32MZ4 808 aaKnown RBP25.59■■□□□ 1.69
VPS29-206ENST00000549578 GPR75-ASB3A0A0A6YYF3 556 aa25.58■■□□□ 1.69
VPS29-206ENST00000549578 TMED8Q6PL24 325 aaPredicted RBP25.58■■□□□ 1.69
VPS29-206ENST00000549578 ZNF784Q8NCA9 323 aaPredicted RBP25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms