RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 ZBTB48P10074 688 aaPredicted RBP21.78■■□□□ 1.08
CHMP1A-205ENST00000548650 BCAMP50895 628 aa21.78■■□□□ 1.08
CHMP1A-205ENST00000548650 NOM1Q5C9Z4 860 aaKnown RBP21.78■■□□□ 1.08
CHMP1A-205ENST00000548650 ZNF296Q8WUU4 475 aaPredicted RBP21.78■■□□□ 1.08
CHMP1A-205ENST00000548650 WNK4Q96J92 1243 aa21.78■■□□□ 1.08
CHMP1A-205ENST00000548650 NOB1Q9ULX3 412 aaKnown RBP21.78■■□□□ 1.08
CHMP1A-205ENST00000548650 UBTFL1P0CB47 393 aaPredicted RBP21.77■■□□□ 1.08
CHMP1A-205ENST00000548650 ATG9AQ7Z3C6 839 aa21.77■■□□□ 1.08
CHMP1A-205ENST00000548650 TEPSINQ96N21 525 aa21.77■■□□□ 1.08
CHMP1A-205ENST00000548650 FRAT2O75474 233 aaPredicted RBP21.76■■□□□ 1.07
CHMP1A-205ENST00000548650 USP2O75604 605 aaPredicted RBP21.76■■□□□ 1.07
CHMP1A-205ENST00000548650 IFIT1P09914 478 aaKnown RBP21.76■■□□□ 1.07
CHMP1A-205ENST00000548650 IREB2P48200 963 aaKnown RBP21.76■■□□□ 1.07
CHMP1A-205ENST00000548650 HDLBPQ00341 1268 aaKnown RBP21.76■■□□□ 1.07
CHMP1A-205ENST00000548650 SLC10A4Q96EP9 437 aa21.76■■□□□ 1.07
CHMP1A-205ENST00000548650 API5Q9BZZ5 524 aaKnown RBP21.76■■□□□ 1.07
CHMP1A-205ENST00000548650 MANSC4A6NHS7 340 aaPredicted RBP21.75■■□□□ 1.07
CHMP1A-205ENST00000548650 GPR25O00155 361 aa21.75■■□□□ 1.07
CHMP1A-205ENST00000548650 R3HDMLQ9H3Y0 253 aa21.75■■□□□ 1.07
CHMP1A-205ENST00000548650 TCP10L2B9ZVM9 353 aa21.74■■□□□ 1.07
CHMP1A-205ENST00000548650 SLC5A1P13866 664 aa21.74■■□□□ 1.07
CHMP1A-205ENST00000548650 GJA5P36382 358 aa21.74■■□□□ 1.07
CHMP1A-205ENST00000548650 MLLT1Q03111 559 aaPredicted RBP21.74■■□□□ 1.07
CHMP1A-205ENST00000548650 ANKRD13AQ8IZ07 590 aa21.74■■□□□ 1.07
CHMP1A-205ENST00000548650 LPIN2Q92539 896 aa21.74■■□□□ 1.07
CHMP1A-205ENST00000548650 TEKT1Q969V4 418 aa21.74■■□□□ 1.07
CHMP1A-205ENST00000548650 TMEM39BQ9GZU3 492 aa21.74■■□□□ 1.07
CHMP1A-205ENST00000548650 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.74■■□□□ 1.07
CHMP1A-205ENST00000548650 LRRFIP2Q9Y608 721 aaKnown RBP21.74■■□□□ 1.07
CHMP1A-205ENST00000548650 IGF2BP3O00425 579 aaKnown RBP eCLIP21.73■■□□□ 1.07
CHMP1A-205ENST00000548650 CIAO1O76071 339 aa21.73■■□□□ 1.07
CHMP1A-205ENST00000548650 RARSP54136 660 aaKnown RBP21.73■■□□□ 1.07
CHMP1A-205ENST00000548650 IFNL1Q8IU54 200 aa21.73■■□□□ 1.07
CHMP1A-205ENST00000548650 ZDHHC15Q96MV8 337 aa21.73■■□□□ 1.07
CHMP1A-205ENST00000548650 SIL1Q9H173 461 aa21.73■■□□□ 1.07
CHMP1A-205ENST00000548650 FBXO3Q9UK99 471 aa21.73■■□□□ 1.07
CHMP1A-205ENST00000548650 SUGT1Q9Y2Z0 365 aa21.73■■□□□ 1.07
CHMP1A-205ENST00000548650 MAST3O60307 1309 aa21.73■■□□□ 1.07
CHMP1A-205ENST00000548650 ALDH1A1P00352 501 aa21.72■■□□□ 1.07
CHMP1A-205ENST00000548650 TNNI2P48788 182 aa21.72■■□□□ 1.07
CHMP1A-205ENST00000548650 CACNB3P54284 484 aa21.72■■□□□ 1.07
CHMP1A-205ENST00000548650 MEIS3Q99687 375 aa21.72■■□□□ 1.07
CHMP1A-205ENST00000548650 INHBEP58166 350 aa21.71■■□□□ 1.07
CHMP1A-205ENST00000548650 ATP2B3Q16720 1220 aa21.71■■□□□ 1.07
CHMP1A-205ENST00000548650 HPS5Q9UPZ3 1129 aa21.71■■□□□ 1.07
CHMP1A-205ENST00000548650 RPAP1Q9BWH6 1393 aaPredicted RBP21.71■■□□□ 1.07
CHMP1A-205ENST00000548650 APOBEC3HQ6NTF7 200 aaKnown RBP21.7■■□□□ 1.06
CHMP1A-205ENST00000548650 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.7■■□□□ 1.06
CHMP1A-205ENST00000548650 MRIQ9BWK5 157 aa21.7■■□□□ 1.06
CHMP1A-205ENST00000548650 ELP3Q9H9T3 547 aa21.7■■□□□ 1.06
CHMP1A-205ENST00000548650 FKTNO75072 461 aa21.69■■□□□ 1.06
CHMP1A-205ENST00000548650 SOX10P56693 466 aa21.69■■□□□ 1.06
CHMP1A-205ENST00000548650 PKN2Q16513 984 aaKnown RBP21.69■■□□□ 1.06
CHMP1A-205ENST00000548650 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.69■■□□□ 1.06
CHMP1A-205ENST00000548650 WDR66Q8TBY9 1149 aa21.69■■□□□ 1.06
CHMP1A-205ENST00000548650 PA2G4Q9UQ80 394 aaKnown RBP21.69■■□□□ 1.06
CHMP1A-205ENST00000548650 VGLL4Q14135 290 aa21.68■■□□□ 1.06
CHMP1A-205ENST00000548650 FKBP1CQ5VVH2 108 aa21.68■■□□□ 1.06
CHMP1A-205ENST00000548650 INTS3Q68E01 1043 aaKnown RBP21.68■■□□□ 1.06
CHMP1A-205ENST00000548650 HHIPL2Q6UWX4 724 aa21.68■■□□□ 1.06
CHMP1A-205ENST00000548650 ARHGAP45Q92619 1136 aa21.68■■□□□ 1.06
CHMP1A-205ENST00000548650 OPTNQ96CV9 577 aa21.68■■□□□ 1.06
CHMP1A-205ENST00000548650 COPRSQ9NQ92 184 aa21.68■■□□□ 1.06
CHMP1A-205ENST00000548650 TMOD2Q9NZR1 351 aa21.68■■□□□ 1.06
CHMP1A-205ENST00000548650 CEP126Q9P2H0 1117 aa21.68■■□□□ 1.06
CHMP1A-205ENST00000548650 HDAC5Q9UQL6 1122 aa21.68■■□□□ 1.06
CHMP1A-205ENST00000548650 PDE4DIPQ5VU43 2346 aa21.67■■□□□ 1.06
CHMP1A-205ENST00000548650 TESPA1A2RU30 521 aaPredicted RBP21.67■■□□□ 1.06
CHMP1A-205ENST00000548650 IL15P40933 162 aaPredicted RBP21.67■■□□□ 1.06
CHMP1A-205ENST00000548650 FAM83AQ86UY5 434 aa21.67■■□□□ 1.06
CHMP1A-205ENST00000548650 CNKSR2Q8WXI2 1034 aa21.67■■□□□ 1.06
CHMP1A-205ENST00000548650 MYH2Q9UKX2 1941 aa21.67■■□□□ 1.06
CHMP1A-205ENST00000548650 DOCK2Q92608 1830 aa21.66■■□□□ 1.06
CHMP1A-205ENST00000548650 TNRC18O15417 2968 aaPredicted RBP21.66■■□□□ 1.06
CHMP1A-205ENST00000548650 PRDX5P30044 214 aa21.66■■□□□ 1.06
CHMP1A-205ENST00000548650 PTPN18Q99952 460 aa21.66■■□□□ 1.06
CHMP1A-205ENST00000548650 HTTP42858 3142 aa21.65■■□□□ 1.06
CHMP1A-205ENST00000548650 SALL1Q9NSC2 1324 aa21.65■■□□□ 1.06
CHMP1A-205ENST00000548650 PHKA1P46020 1223 aa21.65■■□□□ 1.06
CHMP1A-205ENST00000548650 DIXDC1Q155Q3 683 aa21.65■■□□□ 1.06
CHMP1A-205ENST00000548650 FBXO46Q6PJ61 603 aaPredicted RBP21.65■■□□□ 1.06
CHMP1A-205ENST00000548650 MS4A4AQ96JQ5 239 aa21.65■■□□□ 1.06
CHMP1A-205ENST00000548650 DAGLAQ9Y4D2 1042 aa21.65■■□□□ 1.06
CHMP1A-205ENST00000548650 ZBTB22O15209 634 aa21.64■■□□□ 1.05
CHMP1A-205ENST00000548650 TRIM27P14373 513 aa21.64■■□□□ 1.05
CHMP1A-205ENST00000548650 ADORA1P30542 326 aa21.64■■□□□ 1.05
CHMP1A-205ENST00000548650 MAP3K9P80192 1104 aa21.64■■□□□ 1.05
CHMP1A-205ENST00000548650 CRHR2Q13324 411 aa21.64■■□□□ 1.05
CHMP1A-205ENST00000548650 MTX1Q13505 466 aa21.64■■□□□ 1.05
CHMP1A-205ENST00000548650 CSADQ9Y600 493 aa21.64■■□□□ 1.05
CHMP1A-205ENST00000548650 SNCAIPQ9Y6H5 919 aa21.64■■□□□ 1.05
CHMP1A-205ENST00000548650 AK9Q5TCS8 1911 aa21.63■■□□□ 1.05
CHMP1A-205ENST00000548650 SEMA3EO15041 775 aa21.63■■□□□ 1.05
CHMP1A-205ENST00000548650 GNAI3P08754 354 aa21.63■■□□□ 1.05
CHMP1A-205ENST00000548650 BRI3BPQ8WY22 251 aa21.63■■□□□ 1.05
CHMP1A-205ENST00000548650 GNL3LQ9NVN8 582 aaKnown RBP21.63■■□□□ 1.05
CHMP1A-205ENST00000548650 TNNQ9UQP3 1299 aa21.63■■□□□ 1.05
CHMP1A-205ENST00000548650 SPDYE5A6NIY4 337 aa21.62■■□□□ 1.05
CHMP1A-205ENST00000548650 OTUD7BQ6GQQ9 843 aa21.62■■□□□ 1.05
CHMP1A-205ENST00000548650 OTUD5Q96G74 571 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms