RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 PI16Q6UXB8 463 aa16.76■□□□□ 0.27
PTCH1-213ENST00000546820 SAMD7Q7Z3H4 446 aa16.76■□□□□ 0.27
PTCH1-213ENST00000546820 ZC3H15Q8WU90 426 aaKnown RBP16.76■□□□□ 0.27
PTCH1-213ENST00000546820 RAI14Q9P0K7 980 aa16.76■□□□□ 0.27
PTCH1-213ENST00000546820 SHTN1A0MZ66 631 aa16.75■□□□□ 0.27
PTCH1-213ENST00000546820 MYO1BO43795 1136 aa16.75■□□□□ 0.27
PTCH1-213ENST00000546820 GLRX3O76003 335 aaKnown RBP16.75■□□□□ 0.27
PTCH1-213ENST00000546820 TOMM70O94826 608 aa16.75■□□□□ 0.27
PTCH1-213ENST00000546820 CYP2E1P05181 493 aaPredicted RBP16.75■□□□□ 0.27
PTCH1-213ENST00000546820 LDHCP07864 332 aa16.75■□□□□ 0.27
PTCH1-213ENST00000546820 GSTO1P78417 241 aa16.75■□□□□ 0.27
PTCH1-213ENST00000546820 TBC1D9Q6ZT07 1266 aa16.75■□□□□ 0.27
PTCH1-213ENST00000546820 LDHDQ86WU2 507 aa16.75■□□□□ 0.27
PTCH1-213ENST00000546820 DZIP1Q86YF9 867 aaKnown RBP16.75■□□□□ 0.27
PTCH1-213ENST00000546820 MTMR14Q8NCE2 650 aa16.75■□□□□ 0.27
PTCH1-213ENST00000546820 TEKT1Q969V4 418 aa16.75■□□□□ 0.27
PTCH1-213ENST00000546820 HAUS7Q99871 368 aa16.75■□□□□ 0.27
PTCH1-213ENST00000546820 PRDX5P30044 214 aa16.74■□□□□ 0.27
PTCH1-213ENST00000546820 GRIK5Q16478 980 aa16.74■□□□□ 0.27
PTCH1-213ENST00000546820 CFAP100Q494V2 611 aa16.74■□□□□ 0.27
PTCH1-213ENST00000546820 HHIPL2Q6UWX4 724 aa16.74■□□□□ 0.27
PTCH1-213ENST00000546820 DNAJC2Q99543 621 aaKnown RBP16.74■□□□□ 0.27
PTCH1-213ENST00000546820 STAP2Q9UGK3 403 aa16.74■□□□□ 0.27
PTCH1-213ENST00000546820 COL1A1P02452 1464 aaPredicted RBP16.73■□□□□ 0.27
PTCH1-213ENST00000546820 GOLIM4O00461 696 aa16.73■□□□□ 0.27
PTCH1-213ENST00000546820 CRKP46108 304 aa16.73■□□□□ 0.27
PTCH1-213ENST00000546820 HIRAP54198 1017 aaPredicted RBP16.73■□□□□ 0.27
PTCH1-213ENST00000546820 PDE1AP54750 535 aa16.73■□□□□ 0.27
PTCH1-213ENST00000546820 MAP3K12Q12852 859 aa16.73■□□□□ 0.27
PTCH1-213ENST00000546820 TMED8Q6PL24 325 aaPredicted RBP16.73■□□□□ 0.27
PTCH1-213ENST00000546820 TRPM4Q8TD43 1214 aa16.73■□□□□ 0.27
PTCH1-213ENST00000546820 PAG1Q9NWQ8 432 aa16.73■□□□□ 0.27
PTCH1-213ENST00000546820 WNT10BO00744 389 aa16.72■□□□□ 0.27
PTCH1-213ENST00000546820 IDH1O75874 414 aaKnown RBP16.72■□□□□ 0.27
PTCH1-213ENST00000546820 CHADLQ6NUI6 762 aa16.72■□□□□ 0.27
PTCH1-213ENST00000546820 SMC1BQ8NDV3 1235 aa16.72■□□□□ 0.27
PTCH1-213ENST00000546820 RBM46Q8TBY0 533 aaKnown RBP16.72■□□□□ 0.27
PTCH1-213ENST00000546820 OTUD7AQ8TE49 926 aaPredicted RBP16.72■□□□□ 0.27
PTCH1-213ENST00000546820 DCPSQ96C86 337 aaKnown RBP16.72■□□□□ 0.27
PTCH1-213ENST00000546820 FAM163AQ96GL9 167 aaPredicted RBP16.72■□□□□ 0.27
PTCH1-213ENST00000546820 ZDHHC15Q96MV8 337 aa16.72■□□□□ 0.27
PTCH1-213ENST00000546820 AKAP11Q9UKA4 1901 aa16.71■□□□□ 0.27
PTCH1-213ENST00000546820 MECOMQ03112 1051 aa16.71■□□□□ 0.27
PTCH1-213ENST00000546820 PRMT6Q96LA8 375 aaPredicted RBP16.71■□□□□ 0.27
PTCH1-213ENST00000546820 NOL10Q9BSC4 688 aaKnown RBP16.71■□□□□ 0.27
PTCH1-213ENST00000546820 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.71■□□□□ 0.27
PTCH1-213ENST00000546820 PIH1D3Q9NQM4 214 aaKnown RBP16.71■□□□□ 0.27
PTCH1-213ENST00000546820 PGAP2Q9UHJ9 254 aa16.71■□□□□ 0.27
PTCH1-213ENST00000546820 NDUFB9Q9Y6M9 179 aa16.71■□□□□ 0.27
PTCH1-213ENST00000546820 AOX1Q06278 1338 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 ZNF646O15015 1829 aaPredicted RBP16.7■□□□□ 0.26
PTCH1-213ENST00000546820 SPDYE2BA6NHP3 402 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 EGFRP00533 1210 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 SPDYE6P0CI01 402 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 LRRFIP1Q32MZ4 808 aaKnown RBP16.7■□□□□ 0.26
PTCH1-213ENST00000546820 NBPF9Q3BBW0 867 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 TSHZ3Q63HK5 1081 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 NAA16Q6N069 864 aaPredicted RBP16.7■□□□□ 0.26
PTCH1-213ENST00000546820 ZSCAN25Q6NSZ9 544 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 PLEKHM2Q8IWE5 1019 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 PI4K2BQ8TCG2 481 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 NSUN4Q96CB9 384 aaKnown RBP16.7■□□□□ 0.26
PTCH1-213ENST00000546820 OSBPL3Q9H4L5 887 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 ANTXR1Q9H6X2 564 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 SALL3Q9BXA9 1300 aa16.7■□□□□ 0.26
PTCH1-213ENST00000546820 POTEIP0CG38 1075 aa16.69■□□□□ 0.26
PTCH1-213ENST00000546820 POTEJP0CG39 1038 aa16.69■□□□□ 0.26
PTCH1-213ENST00000546820 FSTL1Q12841 308 aa16.69■□□□□ 0.26
PTCH1-213ENST00000546820 DIXDC1Q155Q3 683 aa16.69■□□□□ 0.26
PTCH1-213ENST00000546820 CDC37L1Q7L3B6 337 aa16.69■□□□□ 0.26
PTCH1-213ENST00000546820 ZBED3Q96IU2 234 aaPredicted RBP16.69■□□□□ 0.26
PTCH1-213ENST00000546820 BAG3O95817 575 aa16.68■□□□□ 0.26
PTCH1-213ENST00000546820 SLC9C2Q5TAH2 1124 aa16.68■□□□□ 0.26
PTCH1-213ENST00000546820 ANGEL2Q5VTE6 544 aaKnown RBP16.68■□□□□ 0.26
PTCH1-213ENST00000546820 APOBEC3HQ6NTF7 200 aaKnown RBP16.68■□□□□ 0.26
PTCH1-213ENST00000546820 SULF1Q8IWU6 871 aa16.68■□□□□ 0.26
PTCH1-213ENST00000546820 CNTROBQ8N137 903 aa16.68■□□□□ 0.26
PTCH1-213ENST00000546820 TMOD2Q9NZR1 351 aa16.68■□□□□ 0.26
PTCH1-213ENST00000546820 DAGLAQ9Y4D2 1042 aa16.68■□□□□ 0.26
PTCH1-213ENST00000546820 MROH7-TTC4A0A0A0MT08 1334 aa16.68■□□□□ 0.26
PTCH1-213ENST00000546820 PITPNM2Q9BZ72 1349 aa16.68■□□□□ 0.26
PTCH1-213ENST00000546820 MAP4K4O95819 1239 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-213ENST00000546820 CYP7A1P22680 504 aa16.67■□□□□ 0.26
PTCH1-213ENST00000546820 MAP1SQ66K74 1059 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-213ENST00000546820 CERS3Q8IU89 383 aa16.67■□□□□ 0.26
PTCH1-213ENST00000546820 APOBEC3FQ8IUX4 373 aaKnown RBP16.67■□□□□ 0.26
PTCH1-213ENST00000546820 MAGEB6Q8N7X4 407 aa16.67■□□□□ 0.26
PTCH1-213ENST00000546820 KBTBD3Q8NAB2 608 aa16.67■□□□□ 0.26
PTCH1-213ENST00000546820 EDC3Q96F86 508 aaKnown RBP16.67■□□□□ 0.26
PTCH1-213ENST00000546820 TDRD3Q9H7E2 651 aaKnown RBP16.67■□□□□ 0.26
PTCH1-213ENST00000546820 GGA3Q9NZ52 723 aa16.67■□□□□ 0.26
PTCH1-213ENST00000546820 GPR75-ASB3A0A0A6YYF3 556 aa16.66■□□□□ 0.26
PTCH1-213ENST00000546820 PLCG2P16885 1265 aa16.66■□□□□ 0.26
PTCH1-213ENST00000546820 TNNI2P48788 182 aa16.66■□□□□ 0.26
PTCH1-213ENST00000546820 TNFAIP1Q13829 316 aa16.66■□□□□ 0.26
PTCH1-213ENST00000546820 KRT26Q7Z3Y9 468 aa16.66■□□□□ 0.26
PTCH1-213ENST00000546820 EVI5LQ96CN4 794 aa16.66■□□□□ 0.26
PTCH1-213ENST00000546820 USP40Q9NVE5 1235 aa16.66■□□□□ 0.26
PTCH1-213ENST00000546820 ZNF70Q9UC06 446 aaPredicted RBP16.66■□□□□ 0.26
PTCH1-213ENST00000546820 PCDHAC2Q9Y5I4 1007 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms