RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ECM29Q5VYK3 1845 aa16.29■□□□□ 0.2
SCAF11-208ENST00000546534 H0YGN5 161 aa16.29■□□□□ 0.2
SCAF11-208ENST00000546534 MYCP01106 439 aaPredicted RBP16.29■□□□□ 0.2
SCAF11-208ENST00000546534 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.29■□□□□ 0.2
SCAF11-208ENST00000546534 CDAN1Q8IWY9 1227 aa16.29■□□□□ 0.2
SCAF11-208ENST00000546534 TSR2Q969E8 191 aaKnown RBP16.29■□□□□ 0.2
SCAF11-208ENST00000546534 ZFYVE28Q9HCC9 887 aa16.29■□□□□ 0.2
SCAF11-208ENST00000546534 ZNF70Q9UC06 446 aaPredicted RBP16.29■□□□□ 0.2
SCAF11-208ENST00000546534 CENPFP49454 3210 aa16.28■□□□□ 0.2
SCAF11-208ENST00000546534 CCL15-CCL14A0A0B4J2E2 113 aa16.28■□□□□ 0.2
SCAF11-208ENST00000546534 CCL15Q16663 113 aa16.28■□□□□ 0.2
SCAF11-208ENST00000546534 FAM43AQ8N2R8 423 aa16.28■□□□□ 0.2
SCAF11-208ENST00000546534 TEPSINQ96N21 525 aa16.28■□□□□ 0.2
SCAF11-208ENST00000546534 MYH16Q9H6N6 1097 aa16.28■□□□□ 0.2
SCAF11-208ENST00000546534 TDRD3Q9H7E2 651 aaKnown RBP16.28■□□□□ 0.2
SCAF11-208ENST00000546534 BRCA2P51587 3418 aa16.28■□□□□ 0.2
SCAF11-208ENST00000546534 GTF2A2P52657 109 aa16.27■□□□□ 0.2
SCAF11-208ENST00000546534 TNFAIP1Q13829 316 aa16.27■□□□□ 0.2
SCAF11-208ENST00000546534 VGLL4Q14135 290 aa16.27■□□□□ 0.2
SCAF11-208ENST00000546534 LINS1Q8NG48 757 aa16.27■□□□□ 0.2
SCAF11-208ENST00000546534 SH3TC2Q8TF17 1288 aa16.27■□□□□ 0.2
SCAF11-208ENST00000546534 OTUD5Q96G74 571 aa16.27■□□□□ 0.2
SCAF11-208ENST00000546534 OTOFQ9HC10 1997 aa16.26■□□□□ 0.19
SCAF11-208ENST00000546534 MAP3K9P80192 1104 aa16.26■□□□□ 0.19
SCAF11-208ENST00000546534 FOXO4P98177 505 aa16.26■□□□□ 0.19
SCAF11-208ENST00000546534 IFIT5Q13325 482 aaKnown RBP16.26■□□□□ 0.19
SCAF11-208ENST00000546534 TWISTNBQ3B726 338 aaPredicted RBP16.26■□□□□ 0.19
SCAF11-208ENST00000546534 DNAAF4Q8WXU2 420 aa16.26■□□□□ 0.19
SCAF11-208ENST00000546534 ARHGAP39Q9C0H5 1083 aa16.26■□□□□ 0.19
SCAF11-208ENST00000546534 TMEM39BQ9GZU3 492 aa16.26■□□□□ 0.19
SCAF11-208ENST00000546534 FAM205AQ6ZU69 1335 aa16.25■□□□□ 0.19
SCAF11-208ENST00000546534 TCP10L2B9ZVM9 353 aa16.25■□□□□ 0.19
SCAF11-208ENST00000546534 PLIN1O60240 522 aa16.25■□□□□ 0.19
SCAF11-208ENST00000546534 FLIIQ13045 1269 aa16.25■□□□□ 0.19
SCAF11-208ENST00000546534 DZIP1LQ8IYY4 767 aaKnown RBP16.25■□□□□ 0.19
SCAF11-208ENST00000546534 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.25■□□□□ 0.19
SCAF11-208ENST00000546534 SPOCK2Q92563 424 aa16.25■□□□□ 0.19
SCAF11-208ENST00000546534 RTN4Q9NQC3 1192 aaKnown RBP16.25■□□□□ 0.19
SCAF11-208ENST00000546534 SERPINA10Q9UK55 444 aa16.25■□□□□ 0.19
SCAF11-208ENST00000546534 TTF2Q9UNY4 1162 aaKnown RBP16.25■□□□□ 0.19
SCAF11-208ENST00000546534 FKBP5Q13451 457 aaPredicted RBP16.24■□□□□ 0.19
SCAF11-208ENST00000546534 MFSD14BQ5SR56 506 aa16.24■□□□□ 0.19
SCAF11-208ENST00000546534 CHMP3Q9Y3E7 222 aa16.24■□□□□ 0.19
SCAF11-208ENST00000546534 CSADQ9Y600 493 aa16.24■□□□□ 0.19
SCAF11-208ENST00000546534 TRIOBPQ9H2D6 2365 aa16.24■□□□□ 0.19
SCAF11-208ENST00000546534 TLR2O60603 784 aa16.23■□□□□ 0.19
SCAF11-208ENST00000546534 LACTBP83111 547 aaPredicted RBP16.23■□□□□ 0.19
SCAF11-208ENST00000546534 TDRD7Q8NHU6 1098 aaKnown RBP16.23■□□□□ 0.19
SCAF11-208ENST00000546534 ZNF594Q96JF6 807 aaPredicted RBP16.23■□□□□ 0.19
SCAF11-208ENST00000546534 CEP290O15078 2479 aa16.23■□□□□ 0.19
SCAF11-208ENST00000546534 WDHD1O75717 1129 aaPredicted RBP16.22■□□□□ 0.19
SCAF11-208ENST00000546534 KIF22Q14807 665 aa16.22■□□□□ 0.19
SCAF11-208ENST00000546534 LMBR1LQ6UX01 489 aa16.22■□□□□ 0.19
SCAF11-208ENST00000546534 LDHAL6AQ6ZMR3 332 aa16.22■□□□□ 0.19
SCAF11-208ENST00000546534 A0A1B0GUL6 1792 aa16.22■□□□□ 0.19
SCAF11-208ENST00000546534 SPDYE5A6NIY4 337 aa16.21■□□□□ 0.19
SCAF11-208ENST00000546534 BTBD19C9JJ37 291 aa16.21■□□□□ 0.19
SCAF11-208ENST00000546534 CETPP11597 493 aa16.21■□□□□ 0.19
SCAF11-208ENST00000546534 CRKP46108 304 aa16.21■□□□□ 0.19
SCAF11-208ENST00000546534 GYG1P46976 350 aa16.21■□□□□ 0.19
SCAF11-208ENST00000546534 TNNI2P48788 182 aa16.21■□□□□ 0.19
SCAF11-208ENST00000546534 EPHA10Q5JZY3 1008 aa16.21■□□□□ 0.19
SCAF11-208ENST00000546534 SHISA4Q96DD7 197 aa16.21■□□□□ 0.19
SCAF11-208ENST00000546534 PRKRIP1Q9H875 184 aaPredicted RBP16.21■□□□□ 0.19
SCAF11-208ENST00000546534 CNNM1Q9NRU3 951 aa16.21■□□□□ 0.19
SCAF11-208ENST00000546534 SNCAIPQ9Y6H5 919 aa16.21■□□□□ 0.19
SCAF11-208ENST00000546534 ZSWIM8A7E2V4 1837 aa16.2■□□□□ 0.18
SCAF11-208ENST00000546534 ECM2O94769 699 aaPredicted RBP16.2■□□□□ 0.18
SCAF11-208ENST00000546534 GNRH1P01148 92 aa16.2■□□□□ 0.18
SCAF11-208ENST00000546534 HIBADHP31937 336 aaKnown RBP16.2■□□□□ 0.18
SCAF11-208ENST00000546534 MTFR1Q15390 333 aa16.2■□□□□ 0.18
SCAF11-208ENST00000546534 GRIK5Q16478 980 aa16.2■□□□□ 0.18
SCAF11-208ENST00000546534 CCDC57Q2TAC2 916 aa16.2■□□□□ 0.18
SCAF11-208ENST00000546534 ERO1BQ86YB8 467 aa16.2■□□□□ 0.18
SCAF11-208ENST00000546534 FAM84BQ96KN1 310 aaPredicted RBP16.2■□□□□ 0.18
SCAF11-208ENST00000546534 ZCCHC17Q9NP64 241 aaKnown RBP16.2■□□□□ 0.18
SCAF11-208ENST00000546534 RBM27Q9P2N5 1060 aaKnown RBP16.2■□□□□ 0.18
SCAF11-208ENST00000546534 IRF6O14896 467 aa16.19■□□□□ 0.18
SCAF11-208ENST00000546534 MNX1P50219 401 aaPredicted RBP16.19■□□□□ 0.18
SCAF11-208ENST00000546534 PRMT2P55345 433 aa16.19■□□□□ 0.18
SCAF11-208ENST00000546534 SNAPC2Q13487 334 aa16.19■□□□□ 0.18
SCAF11-208ENST00000546534 TAF7LQ5H9L4 462 aa16.19■□□□□ 0.18
SCAF11-208ENST00000546534 DPF3Q92784 378 aa16.19■□□□□ 0.18
SCAF11-208ENST00000546534 ZKSCAN4Q969J2 545 aaPredicted RBP16.19■□□□□ 0.18
SCAF11-208ENST00000546534 F6X3S4 739 aa16.18■□□□□ 0.18
SCAF11-208ENST00000546534 CTGFP29279 349 aa16.18■□□□□ 0.18
SCAF11-208ENST00000546534 CACNB3P54284 484 aa16.18■□□□□ 0.18
SCAF11-208ENST00000546534 UBE4AQ14139 1066 aa16.18■□□□□ 0.18
SCAF11-208ENST00000546534 BEND3Q5T5X7 828 aa16.18■□□□□ 0.18
SCAF11-208ENST00000546534 WWC1Q8IX03 1113 aa16.18■□□□□ 0.18
SCAF11-208ENST00000546534 WRNIP1Q96S55 665 aa16.18■□□□□ 0.18
SCAF11-208ENST00000546534 ARAP2Q8WZ64 1704 aa16.17■□□□□ 0.18
SCAF11-208ENST00000546534 C17orf99Q6UX52 265 aa16.17■□□□□ 0.18
SCAF11-208ENST00000546534 TRIM47Q96LD4 638 aa16.17■□□□□ 0.18
SCAF11-208ENST00000546534 SRRDQ9UH36 339 aa16.17■□□□□ 0.18
SCAF11-208ENST00000546534 CPA4Q9UI42 421 aa16.17■□□□□ 0.18
SCAF11-208ENST00000546534 PSMC4P43686 418 aa16.16■□□□□ 0.18
SCAF11-208ENST00000546534 PPIL2Q13356 520 aa16.16■□□□□ 0.18
SCAF11-208ENST00000546534 CCDC27Q2M243 656 aa16.16■□□□□ 0.18
SCAF11-208ENST00000546534 UBE2Q1Q7Z7E8 422 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms