RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 PFKFB1P16118 471 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 PNOCQ13519 176 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 MTERF4Q7Z6M4 381 aaKnown RBP17.49■□□□□ 0.39
USP28-214ENST00000545540 MB21D2Q8IYB1 491 aaPredicted RBP17.49■□□□□ 0.39
USP28-214ENST00000545540 LRRN4CLQ8ND94 238 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 CCZ1BP86790 482 aa17.48■□□□□ 0.39
USP28-214ENST00000545540 CCZ1P86791 482 aaPredicted RBP17.48■□□□□ 0.39
USP28-214ENST00000545540 ADALQ6DHV7 355 aa17.48■□□□□ 0.39
USP28-214ENST00000545540 ALG1Q9BT22 464 aa17.48■□□□□ 0.39
USP28-214ENST00000545540 TMOD3Q9NYL9 352 aa17.48■□□□□ 0.39
USP28-214ENST00000545540 SIPA1L3O60292 1781 aaPredicted RBP17.48■□□□□ 0.39
USP28-214ENST00000545540 hCG_1642624A0A1W2PR95 340 aa17.47■□□□□ 0.39
USP28-214ENST00000545540 PIGBQ92521 554 aa17.47■□□□□ 0.39
USP28-214ENST00000545540 APPBP2Q92624 585 aa17.47■□□□□ 0.39
USP28-214ENST00000545540 DPF2Q92785 391 aa17.47■□□□□ 0.39
USP28-214ENST00000545540 RTEL1Q9NZ71 1219 aa17.47■□□□□ 0.39
USP28-214ENST00000545540 PRDM4Q9UKN5 801 aa17.47■□□□□ 0.39
USP28-214ENST00000545540 MRC1P22897 1456 aa17.47■□□□□ 0.39
USP28-214ENST00000545540 PRKAB2O43741 272 aa17.47■□□□□ 0.39
USP28-214ENST00000545540 TRDNQ13061 729 aa17.47■□□□□ 0.39
USP28-214ENST00000545540 ZNF532Q9HCE3 1301 aa17.47■□□□□ 0.39
USP28-214ENST00000545540 TRMT112Q9UI30 125 aaKnown RBP17.47■□□□□ 0.39
USP28-214ENST00000545540 SPATA31A3Q5VYP0 1347 aa17.46■□□□□ 0.39
USP28-214ENST00000545540 IL2RBP14784 551 aa17.46■□□□□ 0.39
USP28-214ENST00000545540 KIF23Q02241 960 aaPredicted RBP17.46■□□□□ 0.39
USP28-214ENST00000545540 ANO1Q5XXA6 986 aa17.46■□□□□ 0.39
USP28-214ENST00000545540 PCDH11XQ9BZA7 1347 aa17.46■□□□□ 0.39
USP28-214ENST00000545540 PCDH11YQ9BZA8 1340 aa17.46■□□□□ 0.39
USP28-214ENST00000545540 WTIPA6NIX2 430 aaPredicted RBP17.46■□□□□ 0.39
USP28-214ENST00000545540 ZSCAN20P17040 1043 aaPredicted RBP17.46■□□□□ 0.39
USP28-214ENST00000545540 METAP2P50579 478 aaKnown RBP eCLIP17.46■□□□□ 0.39
USP28-214ENST00000545540 PDILTQ8N807 584 aa17.46■□□□□ 0.39
USP28-214ENST00000545540 CTNNA3Q9UI47 895 aa17.46■□□□□ 0.39
USP28-214ENST00000545540 KCNJ14Q9UNX9 436 aa17.46■□□□□ 0.39
USP28-214ENST00000545540 CTAGE5O15320 804 aa17.46■□□□□ 0.38
USP28-214ENST00000545540 GUCY1A2P33402 732 aa17.46■□□□□ 0.38
USP28-214ENST00000545540 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.46■□□□□ 0.38
USP28-214ENST00000545540 VPS37DQ86XT2 251 aa17.46■□□□□ 0.38
USP28-214ENST00000545540 SCN11AQ9UI33 1791 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 SMTNL1A8MU46 457 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 GRIN1Q05586 938 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 ZNF827Q17R98 1081 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 ARMCX5Q6P1M9 558 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 KIF6Q6ZMV9 814 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 CTIFO43310 598 aaKnown RBP17.45■□□□□ 0.38
USP28-214ENST00000545540 KRT40Q6A162 431 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 MIGA1Q8NAN2 632 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 MRFAP1L1Q96HT8 127 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 ISCA1Q9BUE6 129 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 LAMA4Q16363 1823 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 NEDD4P46934 1319 aa17.45■□□□□ 0.38
USP28-214ENST00000545540 ELF2Q15723 593 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 SYT10Q6XYQ8 523 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 GRAMD1CQ8IYS0 662 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 TTLL11Q8NHH1 800 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 SLC26A6Q9BXS9 759 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 GPR108Q9NPR9 543 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 AXDND1Q5T1B0 1012 aaPredicted RBP17.44■□□□□ 0.38
USP28-214ENST00000545540 BRINP3Q76B58 766 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 ANKRD7Q92527 254 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 ARMT1Q9H993 441 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 AKAP2Q9Y2D5 859 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 MST1RQ04912 1400 aa17.44■□□□□ 0.38
USP28-214ENST00000545540 ARFGEF2Q9Y6D5 1785 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 TMEM232C9JQI7 657 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 IRS4O14654 1257 aaPredicted RBP17.43■□□□□ 0.38
USP28-214ENST00000545540 CCAR2Q8N163 923 aaKnown RBP17.43■□□□□ 0.38
USP28-214ENST00000545540 TACC3Q9Y6A5 838 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 WDR17Q8IZU2 1322 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 SYKP43405 635 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 NAT10Q9H0A0 1025 aaKnown RBP17.43■□□□□ 0.38
USP28-214ENST00000545540 ZBTB1Q9Y2K1 713 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 CCDC102BQ68D86 513 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 SHC4Q6S5L8 630 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 CADPS2Q86UW7 1296 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 SEC31BQ9NQW1 1179 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 RIPOR2Q9Y4F9 1068 aa17.43■□□□□ 0.38
USP28-214ENST00000545540 CIAO1O76071 339 aa17.42■□□□□ 0.38
USP28-214ENST00000545540 E4F1Q66K89 784 aaPredicted RBP17.42■□□□□ 0.38
USP28-214ENST00000545540 SARM1Q6SZW1 724 aa17.42■□□□□ 0.38
USP28-214ENST00000545540 MAGEB6Q8N7X4 407 aa17.42■□□□□ 0.38
USP28-214ENST00000545540 AIDAQ96BJ3 306 aa17.42■□□□□ 0.38
USP28-214ENST00000545540 RANBP6O60518 1105 aaKnown RBP17.42■□□□□ 0.38
USP28-214ENST00000545540 COBLO75128 1261 aa17.42■□□□□ 0.38
USP28-214ENST00000545540 LONRF3Q496Y0 759 aa17.42■□□□□ 0.38
USP28-214ENST00000545540 TMEM67Q5HYA8 995 aa17.42■□□□□ 0.38
USP28-214ENST00000545540 KCNG4Q8TDN1 519 aa17.42■□□□□ 0.38
USP28-214ENST00000545540 NUP133Q8WUM0 1156 aa17.42■□□□□ 0.38
USP28-214ENST00000545540 ST7Q9NRC1 585 aa17.42■□□□□ 0.38
USP28-214ENST00000545540 ANGEL1Q9UNK9 670 aaKnown RBP17.42■□□□□ 0.38
USP28-214ENST00000545540 BTBD18B2RXH4 712 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 ERVV-2B6SEH9 535 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 DHX16O60231 1041 aaKnown RBP17.41■□□□□ 0.38
USP28-214ENST00000545540 SERPINC1P01008 464 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 APOA5Q6Q788 366 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 HOMER1Q86YM7 354 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 ZBTB38Q8NAP3 1195 aaPredicted RBP17.41■□□□□ 0.38
USP28-214ENST00000545540 SLC4A9Q96Q91 983 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 TRPM3Q9HCF6 1732 aaPredicted RBP17.41■□□□□ 0.38
USP28-214ENST00000545540 SLC4A8Q2Y0W8 1093 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms