RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 TNS3Q68CZ2 1445 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 MBD4O95243 580 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 CTSWP56202 376 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 UBASH3AP57075 661 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 PTPN12Q05209 780 aaKnown RBP6.64□□□□□ -1.35
VPS50-220ENST00000544910 PDE4BQ07343 736 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 ZMYM1Q5SVZ6 1142 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 ANO1Q5XXA6 986 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 A0A1B0GVL5 298 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 LIG1P18858 919 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 RXRAP19793 462 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 KIF5BP33176 963 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 ACSBG1Q96GR2 724 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 ANKIB1Q9P2G1 1089 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 GOLGA6L9A6NEM1 432 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 BMP15O95972 392 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 KRT2P35908 639 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 EPS15P42566 896 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 CBX1P83916 185 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 SPTY2D1Q68D10 685 aaPredicted RBP6.64□□□□□ -1.35
VPS50-220ENST00000544910 MKNK2Q9HBH9 465 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 MYO6Q9UM54 1294 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 NRXN3Q9Y4C0 1643 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 GOLGA6L7A0A1B0GV03 622 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 B4E1Z4 1266 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 PCCAP05165 728 aaPredicted RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 CALM1P0DP23 149 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 CALM2P0DP24 149 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 CALM3P0DP25 149 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 KLHL10Q6JEL2 608 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 ZBTB38Q8NAP3 1195 aaPredicted RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 HELBQ8NG08 1087 aaPredicted RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 GTPBP4Q9BZE4 634 aaKnown RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 KAT14Q9H8E8 782 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 SEC63Q9UGP8 760 aaKnown RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 ANGEL1Q9UNK9 670 aaKnown RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 IGKV5-2P06315 115 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 HSPA2P54652 639 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 NAP1L1P55209 391 aaKnown RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 ARMT1Q9H993 441 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 ATG3Q9NT62 314 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 RBM28Q9NW13 759 aaKnown RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 FBXO3Q9UK99 471 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 AXIN2Q9Y2T1 843 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 MRVI1Q9Y6F6 885 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 NR1I2O75469 434 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 TTC6Q86TZ1 520 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 DNAJC10Q8IXB1 793 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 SPATA5Q8NB90 893 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 LPIN2Q92539 896 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 SMARCC1Q92922 1105 aaPredicted RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 PEAK1Q9H792 1746 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 WDR17Q8IZU2 1322 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 ZNF532Q9HCE3 1301 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 NLRP12P59046 1061 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 PIP4K2BP78356 416 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 GSTO1P78417 241 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 DDB1Q16531 1140 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 MIGA1Q8NAN2 632 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 MYRIPQ8NFW9 859 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 GIMAP7Q8NHV1 300 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 UBXN4Q92575 508 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 DLG5Q8TDM6 1919 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 ZMYM6O95789 1325 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 TUBB4AP04350 444 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 PARP10Q53GL7 1025 aa6.63□□□□□ -1.35
VPS50-220ENST00000544910 ZNF444Q8N0Y2 327 aaPredicted RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 ALDH8A1Q9H2A2 487 aaPredicted RBP6.63□□□□□ -1.35
VPS50-220ENST00000544910 KIF5CO60282 957 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 ZRSR2Q15696 482 aaKnown RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 KRI1Q8N9T8 703 aaKnown RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 IFNKQ9P0W0 207 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 MED23Q9ULK4 1368 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 MAST3O60307 1309 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 MAP3K15Q6ZN16 1313 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 CCDC194A0A1B0GVG4 234 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 TSPY2A6NKD2 308 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 CYP21A2P08686 494 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 PDIA3P30101 505 aaKnown RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 CTDSPL2Q05D32 466 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 TOB2Q14106 344 aaPredicted RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 CCDC178Q5BJE1 867 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 C17orf53Q8N3J3 647 aaPredicted RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS50-220ENST00000544910 CDCA7Q9BWT1 371 aaPredicted RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 NYXQ9GZU5 481 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 ARHGAP23Q9P227 1491 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 CDC25BP30305 580 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 AXDND1Q5T1B0 1012 aaPredicted RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 TICAM2Q86XR7 235 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 TXLNBQ8N3L3 684 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 TIGD1Q96MW7 591 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 CTAGE1Q96RT6 745 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 CCDC94Q9BW85 323 aaPredicted RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 CARD10Q9BWT7 1032 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 RMND1Q9NWS8 449 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 CARMIL3Q8ND23 1372 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 URI1O94763 535 aaPredicted RBP6.62□□□□□ -1.35
VPS50-220ENST00000544910 DEXIO95424 95 aa6.62□□□□□ -1.35
VPS50-220ENST00000544910 ARHGAP29Q52LW3 1261 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms