RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 MAP2K2P36507 400 aa14.12□□□□□ -0.15
YBX3-216ENST00000544622 ECE1P42892 770 aa14.12□□□□□ -0.15
YBX3-216ENST00000544622 HUNKP57058 714 aa14.12□□□□□ -0.15
YBX3-216ENST00000544622 RASGRF1Q13972 1273 aa14.12□□□□□ -0.15
YBX3-216ENST00000544622 SPDYE2Q495Y8 402 aa14.12□□□□□ -0.15
YBX3-216ENST00000544622 APOBEC3HQ6NTF7 200 aaKnown RBP14.12□□□□□ -0.15
YBX3-216ENST00000544622 HHIPL2Q6UWX4 724 aa14.12□□□□□ -0.15
YBX3-216ENST00000544622 RPAP2Q8IXW5 612 aaPredicted RBP14.12□□□□□ -0.15
YBX3-216ENST00000544622 ZDHHC15Q96MV8 337 aa14.12□□□□□ -0.15
YBX3-216ENST00000544622 WBP1LQ9NX94 342 aa14.12□□□□□ -0.15
YBX3-216ENST00000544622 THSD7BQ9C0I4 1608 aa14.12□□□□□ -0.15
YBX3-216ENST00000544622 CLRN2A0PK11 232 aa14.11□□□□□ -0.15
YBX3-216ENST00000544622 FAM155AB1AL88 458 aaPredicted RBP14.11□□□□□ -0.15
YBX3-216ENST00000544622 HSPA1AP0DMV8 641 aaKnown RBP14.11□□□□□ -0.15
YBX3-216ENST00000544622 HSPA1BP0DMV9 641 aaKnown RBP14.11□□□□□ -0.15
YBX3-216ENST00000544622 RBM5P52756 815 aaKnown RBP eCLIP14.11□□□□□ -0.15
YBX3-216ENST00000544622 RGMBQ6NW40 437 aa14.11□□□□□ -0.15
YBX3-216ENST00000544622 TEKT1Q969V4 418 aa14.11□□□□□ -0.15
YBX3-216ENST00000544622 TDRD3Q9H7E2 651 aaKnown RBP14.11□□□□□ -0.15
YBX3-216ENST00000544622 ZNF70Q9UC06 446 aaPredicted RBP14.11□□□□□ -0.15
YBX3-216ENST00000544622 PPP2R3BQ9Y5P8 575 aa14.11□□□□□ -0.15
YBX3-216ENST00000544622 ARID4AP29374 1257 aaPredicted RBP14.1□□□□□ -0.15
YBX3-216ENST00000544622 PRDX5P30044 214 aa14.1□□□□□ -0.15
YBX3-216ENST00000544622 TNNI3KQ59H18 835 aa14.1□□□□□ -0.15
YBX3-216ENST00000544622 MOB2Q70IA6 237 aa14.1□□□□□ -0.15
YBX3-216ENST00000544622 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.1□□□□□ -0.15
YBX3-216ENST00000544622 TEPSINQ96N21 525 aa14.1□□□□□ -0.15
YBX3-216ENST00000544622 NEUROD6Q96NK8 337 aa14.1□□□□□ -0.15
YBX3-216ENST00000544622 FPGT-TNNI3KV9GXZ4 949 aa14.1□□□□□ -0.15
YBX3-216ENST00000544622 ECM29Q5VYK3 1845 aa14.1□□□□□ -0.15
YBX3-216ENST00000544622 MAST3O60307 1309 aa14.1□□□□□ -0.15
YBX3-216ENST00000544622 RASA3Q14644 834 aa14.09□□□□□ -0.15
YBX3-216ENST00000544622 MAP3K11Q16584 847 aa14.09□□□□□ -0.15
YBX3-216ENST00000544622 EAF2Q96CJ1 260 aaPredicted RBP14.09□□□□□ -0.15
YBX3-216ENST00000544622 ZNF512BQ96KM6 892 aaPredicted RBP14.09□□□□□ -0.15
YBX3-216ENST00000544622 CHMP4BQ9H444 224 aaKnown RBP14.09□□□□□ -0.15
YBX3-216ENST00000544622 HMG20BQ9P0W2 317 aa14.09□□□□□ -0.15
YBX3-216ENST00000544622 PAPPA2Q9BXP8 1791 aa14.09□□□□□ -0.15
YBX3-216ENST00000544622 AOC2O75106 756 aa14.08□□□□□ -0.16
YBX3-216ENST00000544622 MAP2K1Q02750 393 aaPredicted RBP14.08□□□□□ -0.16
YBX3-216ENST00000544622 LDLRAD1Q5T700 205 aa14.08□□□□□ -0.16
YBX3-216ENST00000544622 FKBP1CQ5VVH2 108 aa14.08□□□□□ -0.16
YBX3-216ENST00000544622 ZGPATQ8N5A5 531 aaKnown RBP14.08□□□□□ -0.16
YBX3-216ENST00000544622 CCDC102AQ96A19 550 aa14.08□□□□□ -0.16
YBX3-216ENST00000544622 FAM163AQ96GL9 167 aaPredicted RBP14.08□□□□□ -0.16
YBX3-216ENST00000544622 ZIC5Q96T25 663 aa14.08□□□□□ -0.16
YBX3-216ENST00000544622 SSC5DA1L4H1 1573 aa14.08□□□□□ -0.16
YBX3-216ENST00000544622 LDHBP07195 334 aaKnown RBP14.07□□□□□ -0.16
YBX3-216ENST00000544622 SLC10A3P09131 477 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 MCAMP43121 646 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 ZNF157P51786 506 aaPredicted RBP14.07□□□□□ -0.16
YBX3-216ENST00000544622 NOGQ13253 232 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 TNFAIP1Q13829 316 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 DIXDC1Q155Q3 683 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 NBPF12Q5TAG4 269 aaPredicted RBP14.07□□□□□ -0.16
YBX3-216ENST00000544622 PAXIP1Q6ZW49 1069 aaPredicted RBP14.07□□□□□ -0.16
YBX3-216ENST00000544622 SPATA5Q8NB90 893 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 ZNF384Q8TF68 577 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 DBNDD2Q9BQY9 259 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 VEZTQ9HBM0 779 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 DBNLQ9UJU6 430 aaKnown RBP14.07□□□□□ -0.16
YBX3-216ENST00000544622 EXOC6BQ9Y2D4 811 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 DAGLAQ9Y4D2 1042 aa14.07□□□□□ -0.16
YBX3-216ENST00000544622 MYH13Q9UKX3 1938 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 UNCXA6NJT0 531 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 UBE2Q2LH0YL09 131 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 UQCRFS1P1P0C7P4 283 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 NF2P35240 595 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 OS9Q13438 667 aaPredicted RBP14.06□□□□□ -0.16
YBX3-216ENST00000544622 SUPT20HL1Q3ZLR7 823 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 PI16Q6UXB8 463 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 FAM83AQ86UY5 434 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 ERC1Q8IUD2 1116 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 CDAN1Q8IWY9 1227 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 RHPN1Q8TCX5 695 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 YTHDC1Q96MU7 727 aaKnown RBP14.06□□□□□ -0.16
YBX3-216ENST00000544622 GAKO14976 1311 aa14.06□□□□□ -0.16
YBX3-216ENST00000544622 TCP10L2B9ZVM9 353 aa14.05□□□□□ -0.16
YBX3-216ENST00000544622 FOXN1O15353 648 aa14.05□□□□□ -0.16
YBX3-216ENST00000544622 GRM1Q13255 1194 aa14.05□□□□□ -0.16
YBX3-216ENST00000544622 HSP90AB4PQ58FF6 505 aa14.05□□□□□ -0.16
YBX3-216ENST00000544622 GORABQ5T7V8 394 aa14.05□□□□□ -0.16
YBX3-216ENST00000544622 CDC42EP5Q6NZY7 148 aa14.05□□□□□ -0.16
YBX3-216ENST00000544622 RASAL3Q86YV0 1011 aa14.05□□□□□ -0.16
YBX3-216ENST00000544622 TMEM39BQ9GZU3 492 aa14.05□□□□□ -0.16
YBX3-216ENST00000544622 TLR7Q9NYK1 1049 aaKnown RBP14.05□□□□□ -0.16
YBX3-216ENST00000544622 FZD1Q9UP38 647 aa14.05□□□□□ -0.16
YBX3-216ENST00000544622 HMMRO75330 724 aa14.04□□□□□ -0.16
YBX3-216ENST00000544622 USP2O75604 605 aaPredicted RBP14.04□□□□□ -0.16
YBX3-216ENST00000544622 CACNB3P54284 484 aa14.04□□□□□ -0.16
YBX3-216ENST00000544622 RRP1P56182 461 aaKnown RBP14.04□□□□□ -0.16
YBX3-216ENST00000544622 CCDC158Q5M9N0 1113 aa14.04□□□□□ -0.16
YBX3-216ENST00000544622 SPTY2D1Q68D10 685 aaPredicted RBP14.04□□□□□ -0.16
YBX3-216ENST00000544622 TBC1D9Q6ZT07 1266 aa14.04□□□□□ -0.16
YBX3-216ENST00000544622 ARMC9Q7Z3E5 817 aa14.04□□□□□ -0.16
YBX3-216ENST00000544622 NSUN4Q96CB9 384 aaKnown RBP14.04□□□□□ -0.16
YBX3-216ENST00000544622 CCDC8Q9H0W5 538 aaPredicted RBP14.04□□□□□ -0.16
YBX3-216ENST00000544622 ABCF2Q9UG63 623 aa14.04□□□□□ -0.16
YBX3-216ENST00000544622 GPR75-ASB3A0A0A6YYF3 556 aa14.03□□□□□ -0.16
YBX3-216ENST00000544622 PPP1R12BO60237 982 aaPredicted RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms