RNA–Protein interactions for RNA: ENST00000544093.5

CHFR-222, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 3

Gene CHFR, Length 942 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-222	ENST00000544093	AOC2	O75106	756 aa		28.76	■■■□□ 2.19
CHFR-222	ENST00000544093	TFCP2	Q12800	502 aa		28.76	■■■□□ 2.19
CHFR-222	ENST00000544093	MVP	Q14764	893 aa	Known RBP	28.76	■■■□□ 2.19
CHFR-222	ENST00000544093	SPDYE2	Q495Y8	402 aa		28.76	■■■□□ 2.19
CHFR-222	ENST00000544093	VEZT	Q9HBM0	779 aa		28.76	■■■□□ 2.19
CHFR-222	ENST00000544093	PCDHAC2	Q9Y5I4	1007 aa		28.76	■■■□□ 2.19
CHFR-222	ENST00000544093	CLRN2	A0PK11	232 aa		28.75	■■■□□ 2.19
CHFR-222	ENST00000544093	FOXN1	O15353	648 aa		28.75	■■■□□ 2.19
CHFR-222	ENST00000544093	CA12	O43570	354 aa		28.75	■■■□□ 2.19
CHFR-222	ENST00000544093	TTLL12	Q14166	644 aa	Predicted RBP	28.75	■■■□□ 2.19
CHFR-222	ENST00000544093	SUPT20HL1	Q3ZLR7	823 aa		28.75	■■■□□ 2.19
CHFR-222	ENST00000544093	PRAMEF18	Q5VWM3	479 aa		28.75	■■■□□ 2.19
CHFR-222	ENST00000544093	CCDC102B	Q68D86	513 aa		28.75	■■■□□ 2.19
CHFR-222	ENST00000544093	PDS5A	Q29RF7	1337 aa	Known RBP	28.74	■■■□□ 2.19
CHFR-222	ENST00000544093	SALL1	Q9NSC2	1324 aa		28.74	■■■□□ 2.19
CHFR-222	ENST00000544093	TIMM10	P62072	90 aa		28.74	■■■□□ 2.19
CHFR-222	ENST00000544093	ARMC9	Q7Z3E5	817 aa		28.74	■■■□□ 2.19
CHFR-222	ENST00000544093	ZGPAT	Q8N5A5	531 aa	Known RBP	28.74	■■■□□ 2.19
CHFR-222	ENST00000544093	ZDHHC15	Q96MV8	337 aa		28.74	■■■□□ 2.19
CHFR-222	ENST00000544093	CHMP4B	Q9H444	224 aa	Known RBP	28.74	■■■□□ 2.19
CHFR-222	ENST00000544093	SLC10A3	P09131	477 aa		28.73	■■■□□ 2.19
CHFR-222	ENST00000544093	PHKA1	P46020	1223 aa		28.73	■■■□□ 2.19
CHFR-222	ENST00000544093	HHIPL2	Q6UWX4	724 aa		28.73	■■■□□ 2.19
CHFR-222	ENST00000544093	PANK1	Q8TE04	598 aa		28.73	■■■□□ 2.19
CHFR-222	ENST00000544093	ZNF70	Q9UC06	446 aa	Predicted RBP	28.73	■■■□□ 2.19
CHFR-222	ENST00000544093	FAM155A	B1AL88	458 aa	Predicted RBP	28.72	■■■□□ 2.19
CHFR-222	ENST00000544093	TNNI2	P48788	182 aa		28.72	■■■□□ 2.19
CHFR-222	ENST00000544093	GRIK5	Q16478	980 aa		28.72	■■■□□ 2.19
CHFR-222	ENST00000544093	REM2	Q8IYK8	340 aa	Predicted RBP	28.72	■■■□□ 2.19
CHFR-222	ENST00000544093	XAGE2	Q96GT9	111 aa		28.72	■■■□□ 2.19
CHFR-222	ENST00000544093	PRDM10	Q9NQV6	1147 aa		28.72	■■■□□ 2.19
CHFR-222	ENST00000544093	ADORA1	P30542	326 aa		28.71	■■■□□ 2.19
CHFR-222	ENST00000544093	TDRD3	Q9H7E2	651 aa	Known RBP	28.71	■■■□□ 2.19
CHFR-222	ENST00000544093	C1orf115	Q9H7X2	142 aa		28.71	■■■□□ 2.19
CHFR-222	ENST00000544093	DDX19B	Q9UMR2	479 aa		28.71	■■■□□ 2.19
CHFR-222	ENST00000544093	PPP1R12B	O60237	982 aa	Predicted RBP	28.7	■■■□□ 2.18
CHFR-222	ENST00000544093	OS9	Q13438	667 aa	Predicted RBP	28.7	■■■□□ 2.18
CHFR-222	ENST00000544093	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	28.7	■■■□□ 2.18
CHFR-222	ENST00000544093	NEUROD6	Q96NK8	337 aa		28.7	■■■□□ 2.18
CHFR-222	ENST00000544093	GPR108	Q9NPR9	543 aa		28.7	■■■□□ 2.18
CHFR-222	ENST00000544093	TMOD2	Q9NZR1	351 aa		28.7	■■■□□ 2.18
CHFR-222	ENST00000544093	UNCX	A6NJT0	531 aa		28.69	■■■□□ 2.18
CHFR-222	ENST00000544093	SURF6	O75683	361 aa	Known RBP	28.69	■■■□□ 2.18
CHFR-222	ENST00000544093	LDHB	P07195	334 aa	Known RBP	28.69	■■■□□ 2.18
CHFR-222	ENST00000544093	RASA3	Q14644	834 aa		28.69	■■■□□ 2.18
CHFR-222	ENST00000544093	GORAB	Q5T7V8	394 aa		28.69	■■■□□ 2.18
CHFR-222	ENST00000544093	NOP58	Q9Y2X3	529 aa	Known RBP	28.69	■■■□□ 2.18
CHFR-222	ENST00000544093	AOX1	Q06278	1338 aa		28.69	■■■□□ 2.18
CHFR-222	ENST00000544093	UBE2Q2L	H0YL09	131 aa		28.68	■■■□□ 2.18
CHFR-222	ENST00000544093	COL13A1	Q5TAT6	717 aa	Predicted RBP	28.68	■■■□□ 2.18
CHFR-222	ENST00000544093	FKBP1C	Q5VVH2	108 aa		28.68	■■■□□ 2.18
CHFR-222	ENST00000544093	MAP3K11	Q16584	847 aa		28.67	■■■□□ 2.18
CHFR-222	ENST00000544093	CEP85	Q6P2H3	762 aa		28.67	■■■□□ 2.18
CHFR-222	ENST00000544093	MOB2	Q70IA6	237 aa		28.67	■■■□□ 2.18
CHFR-222	ENST00000544093	RASAL3	Q86YV0	1011 aa		28.67	■■■□□ 2.18
CHFR-222	ENST00000544093	RASGRF1	Q13972	1273 aa		28.66	■■■□□ 2.18
CHFR-222	ENST00000544093	SPTY2D1	Q68D10	685 aa	Predicted RBP	28.66	■■■□□ 2.18
CHFR-222	ENST00000544093	ANGEL1	Q9UNK9	670 aa	Known RBP	28.66	■■■□□ 2.18
CHFR-222	ENST00000544093	HSPA8	P11142	646 aa	Known RBP	28.65	■■■□□ 2.18
CHFR-222	ENST00000544093	KIF23	Q02241	960 aa	Predicted RBP	28.65	■■■□□ 2.18
CHFR-222	ENST00000544093	LDLRAD1	Q5T700	205 aa		28.65	■■■□□ 2.18
CHFR-222	ENST00000544093	APOBEC3H	Q6NTF7	200 aa	Known RBP	28.65	■■■□□ 2.18
CHFR-222	ENST00000544093	PRDX5	P30044	214 aa		28.64	■■■□□ 2.18
CHFR-222	ENST00000544093	LBX1	P52954	281 aa		28.64	■■■□□ 2.18
CHFR-222	ENST00000544093	PDE3A	Q14432	1141 aa		28.64	■■■□□ 2.18
CHFR-222	ENST00000544093	FAM83A	Q86UY5	434 aa		28.64	■■■□□ 2.18
CHFR-222	ENST00000544093	SLF2	Q8IX21	1173 aa		28.64	■■■□□ 2.18
CHFR-222	ENST00000544093	SSC5D	A1L4H1	1573 aa		28.63	■■■□□ 2.17
CHFR-222	ENST00000544093	AKAP11	Q9UKA4	1901 aa		28.63	■■■□□ 2.17
CHFR-222	ENST00000544093	TCP10L2	B9ZVM9	353 aa		28.63	■■■□□ 2.17
CHFR-222	ENST00000544093	UQCRFS1P1	P0C7P4	283 aa		28.63	■■■□□ 2.17
CHFR-222	ENST00000544093	IREB2	P48200	963 aa	Known RBP	28.63	■■■□□ 2.17
CHFR-222	ENST00000544093	PRKG1	Q13976	671 aa		28.63	■■■□□ 2.17
CHFR-222	ENST00000544093	NBPF12	Q5TAG4	269 aa	Predicted RBP	28.63	■■■□□ 2.17
CHFR-222	ENST00000544093	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	28.63	■■■□□ 2.17
CHFR-222	ENST00000544093	ARID4A	P29374	1257 aa	Predicted RBP	28.62	■■■□□ 2.17
CHFR-222	ENST00000544093	HSP90AB4P	Q58FF6	505 aa		28.62	■■■□□ 2.17
CHFR-222	ENST00000544093	TNNI3K	Q59H18	835 aa		28.62	■■■□□ 2.17
CHFR-222	ENST00000544093	ERC1	Q8IUD2	1116 aa		28.62	■■■□□ 2.17
CHFR-222	ENST00000544093	RPAP2	Q8IXW5	612 aa	Predicted RBP	28.62	■■■□□ 2.17
CHFR-222	ENST00000544093	HOOK2	Q96ED9	719 aa		28.62	■■■□□ 2.17
CHFR-222	ENST00000544093	ZIC5	Q96T25	663 aa		28.62	■■■□□ 2.17
CHFR-222	ENST00000544093	SAGE1	Q9NXZ1	904 aa		28.62	■■■□□ 2.17
CHFR-222	ENST00000544093	COG6	Q9Y2V7	657 aa		28.62	■■■□□ 2.17
CHFR-222	ENST00000544093	FPGT-TNNI3K	V9GXZ4	949 aa		28.62	■■■□□ 2.17
CHFR-222	ENST00000544093	DZIP1	Q86YF9	867 aa	Known RBP	28.61	■■■□□ 2.17
CHFR-222	ENST00000544093	DAGLA	Q9Y4D2	1042 aa		28.61	■■■□□ 2.17
CHFR-222	ENST00000544093	HMMR	O75330	724 aa		28.6	■■■□□ 2.17
CHFR-222	ENST00000544093	CCDC158	Q5M9N0	1113 aa		28.6	■■■□□ 2.17
CHFR-222	ENST00000544093	IFFO2	Q5TF58	517 aa		28.6	■■■□□ 2.17
CHFR-222	ENST00000544093	SPATA5	Q8NB90	893 aa		28.6	■■■□□ 2.17
CHFR-222	ENST00000544093	TEPSIN	Q96N21	525 aa		28.6	■■■□□ 2.17
CHFR-222	ENST00000544093	ZBTB40	Q9NUA8	1239 aa		28.6	■■■□□ 2.17
CHFR-222	ENST00000544093	ABCF2	Q9UG63	623 aa		28.6	■■■□□ 2.17
CHFR-222	ENST00000544093	MYH2	Q9UKX2	1941 aa		28.6	■■■□□ 2.17
CHFR-222	ENST00000544093	RPAP1	Q9BWH6	1393 aa	Predicted RBP	28.6	■■■□□ 2.17
CHFR-222	ENST00000544093	DIXDC1	Q155Q3	683 aa		28.59	■■■□□ 2.17
CHFR-222	ENST00000544093	TNS4	Q8IZW8	715 aa		28.59	■■■□□ 2.17
CHFR-222	ENST00000544093	TMEM39B	Q9GZU3	492 aa		28.59	■■■□□ 2.17
CHFR-222	ENST00000544093	HMG20B	Q9P0W2	317 aa		28.59	■■■□□ 2.17

Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms