RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 MRPS27Q92552 414 aaKnown RBP8.86□□□□□ -0.99
VPS13D-211ENST00000543710 SAMD9LQ8IVG5 1584 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 CTAGE15A4D2H0 777 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 CTAGE8P0CG41 777 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 CTAGE6Q86UF2 777 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 CTAGE4Q8IX94 777 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 SMAP1Q8IYB5 467 aaPredicted RBP8.85□□□□□ -0.99
VPS13D-211ENST00000543710 HINFPQ9BQA5 517 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 KAT14Q9H8E8 782 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 HACL1Q9UJ83 578 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 CEP170Q5SW79 1584 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 ECM2O94769 699 aaPredicted RBP8.85□□□□□ -0.99
VPS13D-211ENST00000543710 NBPF7P0C2Y1 421 aaPredicted RBP8.85□□□□□ -0.99
VPS13D-211ENST00000543710 IARSP41252 1262 aaKnown RBP8.85□□□□□ -0.99
VPS13D-211ENST00000543710 NLRP5P59047 1200 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 NUP58Q9BVL2 599 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 KIAA0232Q92628 1395 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 TLR3O15455 904 aaKnown RBP8.85□□□□□ -0.99
VPS13D-211ENST00000543710 TACC1O75410 805 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 FERP16591 822 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 FKBP4Q02790 459 aaKnown RBP eCLIP8.85□□□□□ -0.99
VPS13D-211ENST00000543710 FLIIQ13045 1269 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 CCDC82Q8N4S0 544 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 ESYT1Q9BSJ8 1104 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 RIMBP2O15034 1052 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 F13A1P00488 732 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 MFSD6Q6ZSS7 791 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 TET3O43151 1660 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 TRIM27P14373 513 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 IL15P40933 162 aaPredicted RBP8.85□□□□□ -0.99
VPS13D-211ENST00000543710 MCMDC2Q4G0Z9 681 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 BRPF3Q9ULD4 1205 aa8.85□□□□□ -0.99
VPS13D-211ENST00000543710 ALDH3A1P30838 453 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 CFAP57Q96MR6 1250 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 ATP7BP35670 1465 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 CTAGE9A4FU28 777 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 CCDC97Q96F63 343 aaPredicted RBP8.84□□□□□ -0.99
VPS13D-211ENST00000543710 MTFR1LQ9H019 292 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 NLRP1Q9C000 1473 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 IQGAP3Q86VI3 1631 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 PDE4CQ08493 712 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 HOMEZQ8IX15 550 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 KCNG1Q9UIX4 513 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 ELP1O95163 1332 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 HSPA4P34932 840 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 KIAA1524Q8TCG1 905 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 PIBF1Q8WXW3 757 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 LZTS2Q9BRK4 669 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 PLCB1Q9NQ66 1216 aa8.84□□□□□ -0.99
VPS13D-211ENST00000543710 FAM135BQ49AJ0 1406 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 RPGRIP1Q96KN7 1286 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 NUCKS1Q9H1E3 243 aaKnown RBP8.83□□□□□ -1
VPS13D-211ENST00000543710 PRDM15P57071 1507 aaPredicted RBP8.83□□□□□ -1
VPS13D-211ENST00000543710 SLU7O95391 586 aaKnown RBP8.83□□□□□ -1
VPS13D-211ENST00000543710 VEGFAP15692 232 aaPredicted RBP8.83□□□□□ -1
VPS13D-211ENST00000543710 KRT2P35908 639 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 MTIF2P46199 727 aaKnown RBP8.83□□□□□ -1
VPS13D-211ENST00000543710 PRIM1P49642 420 aaKnown RBP8.83□□□□□ -1
VPS13D-211ENST00000543710 TMC6Q7Z403 805 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 POTEDQ86YR6 584 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 CNGA4Q8IV77 575 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 ZKSCAN5Q9Y2L8 839 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 ATP2A1O14983 1001 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 ALDH1A1P00352 501 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 ATP2A2P16615 1042 aaKnown RBP8.83□□□□□ -1
VPS13D-211ENST00000543710 PRKG1Q13976 671 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 MAP7Q14244 749 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 AP5M1Q9H0R1 490 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 SEPT11Q9NVA2 429 aaKnown RBP8.83□□□□□ -1
VPS13D-211ENST00000543710 TTF2Q9UNY4 1162 aaKnown RBP8.83□□□□□ -1
VPS13D-211ENST00000543710 FSD2A1L4K1 749 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 STX10O60499 249 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 UFL1O94874 794 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 CIAPIN1Q6FI81 312 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 NFATC2IPQ8NCF5 419 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 CCDC51Q96ER9 411 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 RUNDC3BQ96NL0 473 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 KRT86O43790 486 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 SNX16P57768 344 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 C10orf67Q8IYJ2 551 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 MAIP1Q8WWC4 291 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 ESR2Q92731 530 aa8.83□□□□□ -1
VPS13D-211ENST00000543710 CALR3Q96L12 384 aaKnown RBP8.83□□□□□ -1
VPS13D-211ENST00000543710 IFIT3O14879 490 aaKnown RBP8.82□□□□□ -1
VPS13D-211ENST00000543710 NPM3O75607 178 aaKnown RBP8.82□□□□□ -1
VPS13D-211ENST00000543710 CEBPZQ03701 1054 aaKnown RBP8.82□□□□□ -1
VPS13D-211ENST00000543710 GABPB1Q06547 395 aaPredicted RBP8.82□□□□□ -1
VPS13D-211ENST00000543710 ERCC6LQ2NKX8 1250 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 TMEM67Q5HYA8 995 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 ODR4Q5SWX8 454 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 B4GALNT4Q76KP1 1039 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 CSRNP2Q9H175 543 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 YTHDC2Q9H6S0 1430 aaKnown RBP8.82□□□□□ -1
VPS13D-211ENST00000543710 SBNO1A3KN83 1393 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 SBNO2Q9Y2G9 1366 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 URI1O94763 535 aaPredicted RBP8.82□□□□□ -1
VPS13D-211ENST00000543710 TNNC1P63316 161 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 HDXQ7Z353 690 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 SIL1Q9H173 461 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 POLR1AO95602 1720 aaPredicted RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms