RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 SSC5DA1L4H1 1573 aa16.38■□□□□ 0.21
RTN3-212ENST00000543123 CRKP46108 304 aa16.38■□□□□ 0.21
RTN3-212ENST00000543123 LPIN2Q92539 896 aa16.38■□□□□ 0.21
RTN3-212ENST00000543123 TEKT1Q969V4 418 aa16.38■□□□□ 0.21
RTN3-212ENST00000543123 ZNF70Q9UC06 446 aaPredicted RBP16.38■□□□□ 0.21
RTN3-212ENST00000543123 NOB1Q9ULX3 412 aaKnown RBP16.38■□□□□ 0.21
RTN3-212ENST00000543123 IQSEC3Q9UPP2 1182 aaPredicted RBP16.38■□□□□ 0.21
RTN3-212ENST00000543123 PKN2Q16513 984 aaKnown RBP16.37■□□□□ 0.21
RTN3-212ENST00000543123 NBPF12Q5TAG4 269 aaPredicted RBP16.37■□□□□ 0.21
RTN3-212ENST00000543123 ANKRD13AQ8IZ07 590 aa16.37■□□□□ 0.21
RTN3-212ENST00000543123 CFHR5Q9BXR6 569 aa16.37■□□□□ 0.21
RTN3-212ENST00000543123 TDRD3Q9H7E2 651 aaKnown RBP16.37■□□□□ 0.21
RTN3-212ENST00000543123 TMOD2Q9NZR1 351 aa16.37■□□□□ 0.21
RTN3-212ENST00000543123 CIAO1O76071 339 aa16.36■□□□□ 0.21
RTN3-212ENST00000543123 FGFR2P21802 821 aa16.36■□□□□ 0.21
RTN3-212ENST00000543123 BCAMP50895 628 aa16.36■□□□□ 0.21
RTN3-212ENST00000543123 MRIQ9BWK5 157 aa16.36■□□□□ 0.21
RTN3-212ENST00000543123 TBC1D8O95759 1140 aa16.35■□□□□ 0.21
RTN3-212ENST00000543123 RFX5P48382 616 aaPredicted RBP16.35■□□□□ 0.21
RTN3-212ENST00000543123 RGS19P49795 217 aa16.35■□□□□ 0.21
RTN3-212ENST00000543123 MLLT1Q03111 559 aaPredicted RBP16.35■□□□□ 0.21
RTN3-212ENST00000543123 OTUD7BQ6GQQ9 843 aa16.35■□□□□ 0.21
RTN3-212ENST00000543123 WDR66Q8TBY9 1149 aa16.35■□□□□ 0.21
RTN3-212ENST00000543123 ARHGAP45Q92619 1136 aa16.35■□□□□ 0.21
RTN3-212ENST00000543123 HOOK2Q96ED9 719 aa16.35■□□□□ 0.21
RTN3-212ENST00000543123 WNK4Q96J92 1243 aa16.35■□□□□ 0.21
RTN3-212ENST00000543123 ZDHHC15Q96MV8 337 aa16.35■□□□□ 0.21
RTN3-212ENST00000543123 GNL3LQ9NVN8 582 aaKnown RBP16.35■□□□□ 0.21
RTN3-212ENST00000543123 CEP126Q9P2H0 1117 aa16.35■□□□□ 0.21
RTN3-212ENST00000543123 TCP10L2B9ZVM9 353 aa16.34■□□□□ 0.21
RTN3-212ENST00000543123 GPR25O00155 361 aa16.34■□□□□ 0.21
RTN3-212ENST00000543123 IPO8O15397 1037 aaKnown RBP16.34■□□□□ 0.21
RTN3-212ENST00000543123 IL15P40933 162 aaPredicted RBP16.34■□□□□ 0.21
RTN3-212ENST00000543123 RARSP54136 660 aaKnown RBP16.34■□□□□ 0.21
RTN3-212ENST00000543123 ZNF296Q8WUU4 475 aaPredicted RBP16.34■□□□□ 0.21
RTN3-212ENST00000543123 CLMNQ96JQ2 1002 aa16.34■□□□□ 0.21
RTN3-212ENST00000543123 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.34■□□□□ 0.21
RTN3-212ENST00000543123 FZD1Q9UP38 647 aa16.34■□□□□ 0.21
RTN3-212ENST00000543123 AOX1Q06278 1338 aa16.34■□□□□ 0.21
RTN3-212ENST00000543123 LAMB1P07942 1786 aa16.33■□□□□ 0.21
RTN3-212ENST00000543123 MYH13Q9UKX3 1938 aa16.33■□□□□ 0.21
RTN3-212ENST00000543123 USP2O75604 605 aaPredicted RBP16.33■□□□□ 0.2
RTN3-212ENST00000543123 GNAI3P08754 354 aa16.33■□□□□ 0.2
RTN3-212ENST00000543123 ATP2B3Q16720 1220 aa16.33■□□□□ 0.2
RTN3-212ENST00000543123 FKBP1CQ5VVH2 108 aa16.33■□□□□ 0.2
RTN3-212ENST00000543123 ATG9AQ7Z3C6 839 aa16.33■□□□□ 0.2
RTN3-212ENST00000543123 IFNL1Q8IU54 200 aa16.33■□□□□ 0.2
RTN3-212ENST00000543123 SIL1Q9H173 461 aa16.33■□□□□ 0.2
RTN3-212ENST00000543123 LRRFIP2Q9Y608 721 aaKnown RBP16.33■□□□□ 0.2
RTN3-212ENST00000543123 FKTNO75072 461 aa16.32■□□□□ 0.2
RTN3-212ENST00000543123 HHIPL2Q6UWX4 724 aa16.32■□□□□ 0.2
RTN3-212ENST00000543123 FAM83AQ86UY5 434 aa16.32■□□□□ 0.2
RTN3-212ENST00000543123 TMEM39BQ9GZU3 492 aa16.32■□□□□ 0.2
RTN3-212ENST00000543123 CSADQ9Y600 493 aa16.32■□□□□ 0.2
RTN3-212ENST00000543123 SEMA3EO15041 775 aa16.31■□□□□ 0.2
RTN3-212ENST00000543123 GRIK5Q16478 980 aa16.31■□□□□ 0.2
RTN3-212ENST00000543123 INTS3Q68E01 1043 aaKnown RBP16.31■□□□□ 0.2
RTN3-212ENST00000543123 TEPSINQ96N21 525 aa16.31■□□□□ 0.2
RTN3-212ENST00000543123 RPAP1Q9BWH6 1393 aaPredicted RBP16.3■□□□□ 0.2
RTN3-212ENST00000543123 OTOFQ9HC10 1997 aa16.3■□□□□ 0.2
RTN3-212ENST00000543123 ZGPATQ8N5A5 531 aaKnown RBP16.3■□□□□ 0.2
RTN3-212ENST00000543123 OPTNQ96CV9 577 aa16.3■□□□□ 0.2
RTN3-212ENST00000543123 MEIS3Q99687 375 aa16.3■□□□□ 0.2
RTN3-212ENST00000543123 ELP3Q9H9T3 547 aa16.3■□□□□ 0.2
RTN3-212ENST00000543123 COPRSQ9NQ92 184 aa16.3■□□□□ 0.2
RTN3-212ENST00000543123 DENND2AQ9ULE3 1009 aa16.3■□□□□ 0.2
RTN3-212ENST00000543123 MAP3K9P80192 1104 aa16.29■□□□□ 0.2
RTN3-212ENST00000543123 DCAF15Q66K64 600 aa16.29■□□□□ 0.2
RTN3-212ENST00000543123 APOBEC3HQ6NTF7 200 aaKnown RBP16.29■□□□□ 0.2
RTN3-212ENST00000543123 SALL1Q9NSC2 1324 aa16.28■□□□□ 0.2
RTN3-212ENST00000543123 IGF2BP3O00425 579 aaKnown RBP eCLIP16.28■□□□□ 0.2
RTN3-212ENST00000543123 ZBTB22O15209 634 aa16.28■□□□□ 0.2
RTN3-212ENST00000543123 SRGAP3O43295 1099 aa16.28■□□□□ 0.2
RTN3-212ENST00000543123 WDHD1O75717 1129 aaPredicted RBP16.28■□□□□ 0.2
RTN3-212ENST00000543123 LDHBP07195 334 aaKnown RBP16.28■□□□□ 0.2
RTN3-212ENST00000543123 CACNB3P54284 484 aa16.28■□□□□ 0.2
RTN3-212ENST00000543123 VGLL4Q14135 290 aa16.28■□□□□ 0.2
RTN3-212ENST00000543123 FBXO46Q6PJ61 603 aaPredicted RBP16.28■□□□□ 0.2
RTN3-212ENST00000543123 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.28■□□□□ 0.2
RTN3-212ENST00000543123 HPS5Q9UPZ3 1129 aa16.28■□□□□ 0.2
RTN3-212ENST00000543123 AKAP2Q9Y2D5 859 aa16.28■□□□□ 0.2
RTN3-212ENST00000543123 TESPA1A2RU30 521 aaPredicted RBP16.27■□□□□ 0.2
RTN3-212ENST00000543123 GTF2A2P52657 109 aa16.27■□□□□ 0.2
RTN3-212ENST00000543123 MTX1Q13505 466 aa16.27■□□□□ 0.2
RTN3-212ENST00000543123 ATF7IPQ6VMQ6 1270 aa16.27■□□□□ 0.2
RTN3-212ENST00000543123 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.27■□□□□ 0.2
RTN3-212ENST00000543123 CDAN1Q8IWY9 1227 aa16.27■□□□□ 0.2
RTN3-212ENST00000543123 ERO1AQ96HE7 468 aa16.27■□□□□ 0.2
RTN3-212ENST00000543123 GJA5P36382 358 aa16.26■□□□□ 0.19
RTN3-212ENST00000543123 MVPQ14764 893 aaKnown RBP16.26■□□□□ 0.19
RTN3-212ENST00000543123 SLF2Q8IX21 1173 aa16.26■□□□□ 0.19
RTN3-212ENST00000543123 FRAT1Q92837 279 aaPredicted RBP16.26■□□□□ 0.19
RTN3-212ENST00000543123 WRNIP1Q96S55 665 aa16.26■□□□□ 0.19
RTN3-212ENST00000543123 PA2G4Q9UQ80 394 aaKnown RBP16.26■□□□□ 0.19
RTN3-212ENST00000543123 DAGLAQ9Y4D2 1042 aa16.26■□□□□ 0.19
RTN3-212ENST00000543123 PDS5AQ29RF7 1337 aaKnown RBP16.25■□□□□ 0.19
RTN3-212ENST00000543123 SPDYE5A6NIY4 337 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 GNAI2P04899 355 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 TRIM27P14373 513 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 PRDX5P30044 214 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms