RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 OS9Q13438 667 aaPredicted RBP16.17■□□□□ 0.18
LTBR-208ENST00000541005 RASGRF1Q13972 1273 aa16.17■□□□□ 0.18
LTBR-208ENST00000541005 TNNI3KQ59H18 835 aa16.17■□□□□ 0.18
LTBR-208ENST00000541005 PRMT6Q96LA8 375 aaPredicted RBP16.17■□□□□ 0.18
LTBR-208ENST00000541005 FPGT-TNNI3KV9GXZ4 949 aa16.17■□□□□ 0.18
LTBR-208ENST00000541005 AOX1Q06278 1338 aa16.17■□□□□ 0.18
LTBR-208ENST00000541005 HMMRO75330 724 aa16.16■□□□□ 0.18
LTBR-208ENST00000541005 ARID4AP29374 1257 aaPredicted RBP16.16■□□□□ 0.18
LTBR-208ENST00000541005 RRP1P56182 461 aaKnown RBP16.16■□□□□ 0.18
LTBR-208ENST00000541005 DEFB115Q30KQ5 88 aa16.16■□□□□ 0.18
LTBR-208ENST00000541005 SPDYE2Q495Y8 402 aa16.16■□□□□ 0.18
LTBR-208ENST00000541005 ERC1Q8IUD2 1116 aa16.16■□□□□ 0.18
LTBR-208ENST00000541005 SIRT2Q8IXJ6 389 aa16.16■□□□□ 0.18
LTBR-208ENST00000541005 TEKT1Q969V4 418 aa16.16■□□□□ 0.18
LTBR-208ENST00000541005 ZDHHC15Q96MV8 337 aa16.16■□□□□ 0.18
LTBR-208ENST00000541005 ZNF408Q9H9D4 720 aa16.16■□□□□ 0.18
LTBR-208ENST00000541005 GBA2Q9HCG7 927 aaPredicted RBP16.16■□□□□ 0.18
LTBR-208ENST00000541005 PPP2R3BQ9Y5P8 575 aa16.16■□□□□ 0.18
LTBR-208ENST00000541005 AK9Q5TCS8 1911 aa16.15■□□□□ 0.18
LTBR-208ENST00000541005 VEGFBP49765 207 aa16.15■□□□□ 0.18
LTBR-208ENST00000541005 FKBP1BP68106 108 aa16.15■□□□□ 0.18
LTBR-208ENST00000541005 HSP90AB4PQ58FF6 505 aa16.15■□□□□ 0.18
LTBR-208ENST00000541005 HHIPL2Q6UWX4 724 aa16.15■□□□□ 0.18
LTBR-208ENST00000541005 ZGPATQ8N5A5 531 aaKnown RBP16.15■□□□□ 0.18
LTBR-208ENST00000541005 NEUROD6Q96NK8 337 aa16.15■□□□□ 0.18
LTBR-208ENST00000541005 CDK5RAP2Q96SN8 1893 aa16.15■□□□□ 0.18
LTBR-208ENST00000541005 RBM5P52756 815 aaKnown RBP eCLIP16.14■□□□□ 0.17
LTBR-208ENST00000541005 C2orf69Q8N8R5 385 aa16.14■□□□□ 0.17
LTBR-208ENST00000541005 EXOC6BQ9Y2D4 811 aa16.14■□□□□ 0.17
LTBR-208ENST00000541005 PCNTO95613 3336 aa16.14■□□□□ 0.17
LTBR-208ENST00000541005 SSC5DA1L4H1 1573 aa16.13■□□□□ 0.17
LTBR-208ENST00000541005 FOCADQ5VW36 1801 aa16.13■□□□□ 0.17
LTBR-208ENST00000541005 UQCRFS1P1P0C7P4 283 aa16.13■□□□□ 0.17
LTBR-208ENST00000541005 PRDX5P30044 214 aa16.13■□□□□ 0.17
LTBR-208ENST00000541005 ECE1P42892 770 aa16.13■□□□□ 0.17
LTBR-208ENST00000541005 TNFAIP1Q13829 316 aa16.13■□□□□ 0.17
LTBR-208ENST00000541005 ZNF512BQ96KM6 892 aaPredicted RBP16.13■□□□□ 0.17
LTBR-208ENST00000541005 DEFB129Q9H1M3 183 aa16.13■□□□□ 0.17
LTBR-208ENST00000541005 ZNF70Q9UC06 446 aaPredicted RBP16.13■□□□□ 0.17
LTBR-208ENST00000541005 SCAF8Q9UPN6 1271 aaKnown RBP16.13■□□□□ 0.17
LTBR-208ENST00000541005 MYH7P12883 1935 aa16.13■□□□□ 0.17
LTBR-208ENST00000541005 WDR33Q9C0J8 1336 aaKnown RBP16.13■□□□□ 0.17
LTBR-208ENST00000541005 CLRN2A0PK11 232 aa16.12■□□□□ 0.17
LTBR-208ENST00000541005 LDHBP07195 334 aaKnown RBP16.12■□□□□ 0.17
LTBR-208ENST00000541005 HUNKP57058 714 aa16.12■□□□□ 0.17
LTBR-208ENST00000541005 GORABQ5T7V8 394 aa16.12■□□□□ 0.17
LTBR-208ENST00000541005 APOBEC3HQ6NTF7 200 aaKnown RBP16.12■□□□□ 0.17
LTBR-208ENST00000541005 CAPNS2Q96L46 248 aa16.12■□□□□ 0.17
LTBR-208ENST00000541005 DBNDD2Q9BQY9 259 aa16.12■□□□□ 0.17
LTBR-208ENST00000541005 HMG20BQ9P0W2 317 aa16.12■□□□□ 0.17
LTBR-208ENST00000541005 DBNLQ9UJU6 430 aaKnown RBP16.12■□□□□ 0.17
LTBR-208ENST00000541005 NF2P35240 595 aa16.11■□□□□ 0.17
LTBR-208ENST00000541005 MCAMP43121 646 aa16.11■□□□□ 0.17
LTBR-208ENST00000541005 FKBP1CQ5VVH2 108 aa16.11■□□□□ 0.17
LTBR-208ENST00000541005 SPATA5Q8NB90 893 aa16.11■□□□□ 0.17
LTBR-208ENST00000541005 EAF2Q96CJ1 260 aaPredicted RBP16.11■□□□□ 0.17
LTBR-208ENST00000541005 TDRD3Q9H7E2 651 aaKnown RBP16.11■□□□□ 0.17
LTBR-208ENST00000541005 VEZTQ9HBM0 779 aa16.11■□□□□ 0.17
LTBR-208ENST00000541005 GAKO14976 1311 aa16.11■□□□□ 0.17
LTBR-208ENST00000541005 RPAP1Q9BWH6 1393 aaPredicted RBP16.11■□□□□ 0.17
LTBR-208ENST00000541005 RAB11FIP3O75154 756 aa16.1■□□□□ 0.17
LTBR-208ENST00000541005 PRAMEF18Q5VWM3 479 aa16.1■□□□□ 0.17
LTBR-208ENST00000541005 SPTY2D1Q68D10 685 aaPredicted RBP16.1■□□□□ 0.17
LTBR-208ENST00000541005 CYP4F22Q6NT55 531 aa16.1■□□□□ 0.17
LTBR-208ENST00000541005 RHPN1Q8TCX5 695 aa16.1■□□□□ 0.17
LTBR-208ENST00000541005 KIF1BPQ96EK5 621 aa16.1■□□□□ 0.17
LTBR-208ENST00000541005 DAGLAQ9Y4D2 1042 aa16.1■□□□□ 0.17
LTBR-208ENST00000541005 RASA3Q14644 834 aa16.09■□□□□ 0.17
LTBR-208ENST00000541005 DIXDC1Q155Q3 683 aa16.09■□□□□ 0.17
LTBR-208ENST00000541005 CCDC158Q5M9N0 1113 aa16.09■□□□□ 0.17
LTBR-208ENST00000541005 RGMBQ6NW40 437 aa16.09■□□□□ 0.17
LTBR-208ENST00000541005 PI16Q6UXB8 463 aa16.09■□□□□ 0.17
LTBR-208ENST00000541005 TLR7Q9NYK1 1049 aaKnown RBP16.09■□□□□ 0.17
LTBR-208ENST00000541005 RFX7Q2KHR2 1363 aa16.09■□□□□ 0.17
LTBR-208ENST00000541005 IGSF3O75054 1194 aa16.08■□□□□ 0.16
LTBR-208ENST00000541005 MAP2K2P36507 400 aa16.08■□□□□ 0.16
LTBR-208ENST00000541005 MAP3K11Q16584 847 aa16.08■□□□□ 0.16
LTBR-208ENST00000541005 TTC39AQ5SRH9 613 aa16.08■□□□□ 0.16
LTBR-208ENST00000541005 PAXIP1Q6ZW49 1069 aaPredicted RBP16.08■□□□□ 0.16
LTBR-208ENST00000541005 FAM83AQ86UY5 434 aa16.08■□□□□ 0.16
LTBR-208ENST00000541005 FAM163AQ96GL9 167 aaPredicted RBP16.08■□□□□ 0.16
LTBR-208ENST00000541005 TEPSINQ96N21 525 aa16.08■□□□□ 0.16
LTBR-208ENST00000541005 ABCF2Q9UG63 623 aa16.08■□□□□ 0.16
LTBR-208ENST00000541005 FAM155AB1AL88 458 aaPredicted RBP16.07■□□□□ 0.16
LTBR-208ENST00000541005 TNNI2P48788 182 aa16.07■□□□□ 0.16
LTBR-208ENST00000541005 NOGQ13253 232 aa16.07■□□□□ 0.16
LTBR-208ENST00000541005 SUPT20HL1Q3ZLR7 823 aa16.07■□□□□ 0.16
LTBR-208ENST00000541005 ERICH6Q7L0X2 663 aa16.07■□□□□ 0.16
LTBR-208ENST00000541005 AACSQ86V21 672 aa16.07■□□□□ 0.16
LTBR-208ENST00000541005 DZIP1Q86YF9 867 aaKnown RBP16.07■□□□□ 0.16
LTBR-208ENST00000541005 SLF2Q8IX21 1173 aa16.07■□□□□ 0.16
LTBR-208ENST00000541005 ZNF384Q8TF68 577 aa16.07■□□□□ 0.16
LTBR-208ENST00000541005 CCDC102AQ96A19 550 aa16.07■□□□□ 0.16
LTBR-208ENST00000541005 CCDC8Q9H0W5 538 aaPredicted RBP16.07■□□□□ 0.16
LTBR-208ENST00000541005 TMOD2Q9NZR1 351 aa16.07■□□□□ 0.16
LTBR-208ENST00000541005 MROH7-TTC4A0A0A0MT08 1334 aa16.06■□□□□ 0.16
LTBR-208ENST00000541005 SLC10A3P09131 477 aa16.06■□□□□ 0.16
LTBR-208ENST00000541005 HSPA1AP0DMV8 641 aaKnown RBP16.06■□□□□ 0.16
LTBR-208ENST00000541005 HSPA1BP0DMV9 641 aaKnown RBP16.06■□□□□ 0.16
LTBR-208ENST00000541005 ARMC9Q7Z3E5 817 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms