RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 TDRD3Q9H7E2 651 aaKnown RBP33.92■■■■□ 3.02
CHFR-218ENST00000540963 PPP1R3FQ6ZSY5 799 aaPredicted RBP33.91■■■■□ 3.02
CHFR-218ENST00000540963 GTF2A2P52657 109 aa33.9■■■■□ 3.02
CHFR-218ENST00000540963 GYG1P46976 350 aa33.89■■■■□ 3.02
CHFR-218ENST00000540963 MAP3K9P80192 1104 aa33.89■■■■□ 3.02
CHFR-218ENST00000540963 HDLBPQ00341 1268 aaKnown RBP33.89■■■■□ 3.02
CHFR-218ENST00000540963 CRKP46108 304 aa33.88■■■■□ 3.01
CHFR-218ENST00000540963 DDX55Q8NHQ9 600 aaKnown RBP eCLIP33.88■■■■□ 3.01
CHFR-218ENST00000540963 ZFYVE28Q9HCC9 887 aa33.88■■■■□ 3.01
CHFR-218ENST00000540963 MROH5Q6ZUA9 1318 aa33.87■■■■□ 3.01
CHFR-218ENST00000540963 HABP4Q5JVS0 413 aaKnown RBP33.87■■■■□ 3.01
CHFR-218ENST00000540963 BRI3BPQ8WY22 251 aa33.87■■■■□ 3.01
CHFR-218ENST00000540963 CSADQ9Y600 493 aa33.87■■■■□ 3.01
CHFR-218ENST00000540963 BRCA2P51587 3418 aa33.86■■■■□ 3.01
CHFR-218ENST00000540963 VGLL4Q14135 290 aa33.86■■■■□ 3.01
CHFR-218ENST00000540963 TAF1CQ15572 869 aaPredicted RBP33.86■■■■□ 3.01
CHFR-218ENST00000540963 TBC1D22AQ8WUA7 517 aa33.86■■■■□ 3.01
CHFR-218ENST00000540963 TMEM106CQ9BVX2 250 aa33.86■■■■□ 3.01
CHFR-218ENST00000540963 SRCIN1Q9C0H9 1055 aa33.86■■■■□ 3.01
CHFR-218ENST00000540963 NBPF11Q86T75 865 aa33.85■■■■□ 3.01
CHFR-218ENST00000540963 ZNF333Q96JL9 665 aa33.85■■■■□ 3.01
CHFR-218ENST00000540963 TMEM39BQ9GZU3 492 aa33.85■■■■□ 3.01
CHFR-218ENST00000540963 ZCCHC17Q9NP64 241 aaKnown RBP33.85■■■■□ 3.01
CHFR-218ENST00000540963 RIPOR2Q9Y4F9 1068 aa33.85■■■■□ 3.01
CHFR-218ENST00000540963 CCL15-CCL14A0A0B4J2E2 113 aa33.84■■■■□ 3.01
CHFR-218ENST00000540963 TCP10L2B9ZVM9 353 aa33.84■■■■□ 3.01
CHFR-218ENST00000540963 CAP1Q01518 475 aa33.84■■■■□ 3.01
CHFR-218ENST00000540963 CCL15Q16663 113 aa33.84■■■■□ 3.01
CHFR-218ENST00000540963 FBXO33Q7Z6M2 555 aa33.84■■■■□ 3.01
CHFR-218ENST00000540963 WDHD1O75717 1129 aaPredicted RBP33.83■■■■□ 3.01
CHFR-218ENST00000540963 EN2P19622 333 aaPredicted RBP33.83■■■■□ 3.01
CHFR-218ENST00000540963 CDAN1Q8IWY9 1227 aa33.83■■■■□ 3.01
CHFR-218ENST00000540963 MRIQ9BWK5 157 aa33.83■■■■□ 3.01
CHFR-218ENST00000540963 VPS37DQ86XT2 251 aa33.82■■■■□ 3
CHFR-218ENST00000540963 PUS3Q9BZE2 481 aaKnown RBP33.82■■■■□ 3
CHFR-218ENST00000540963 MRS2Q9HD23 443 aa33.82■■■■□ 3
CHFR-218ENST00000540963 UTYO14607 1347 aa33.81■■■■□ 3
CHFR-218ENST00000540963 SPDYE5A6NIY4 337 aa33.81■■■■□ 3
CHFR-218ENST00000540963 CNKSR2Q8WXI2 1034 aa33.81■■■■□ 3
CHFR-218ENST00000540963 HOOK2Q96ED9 719 aa33.81■■■■□ 3
CHFR-218ENST00000540963 KAZALD1Q96I82 304 aa33.81■■■■□ 3
CHFR-218ENST00000540963 SLC9C1Q4G0N8 1177 aa33.8■■■■□ 3
CHFR-218ENST00000540963 CAVIN4Q5BKX8 364 aa33.8■■■■□ 3
CHFR-218ENST00000540963 FKBP1CQ5VVH2 108 aa33.8■■■■□ 3
CHFR-218ENST00000540963 SLC4A10Q6U841 1118 aa33.8■■■■□ 3
CHFR-218ENST00000540963 OTUD5Q96G74 571 aa33.8■■■■□ 3
CHFR-218ENST00000540963 SUCLG2Q96I99 432 aa33.8■■■■□ 3
CHFR-218ENST00000540963 FAM83AQ86UY5 434 aa33.79■■■■□ 3
CHFR-218ENST00000540963 FAM43AQ8N2R8 423 aa33.79■■■■□ 3
CHFR-218ENST00000540963 TEKT1Q969V4 418 aa33.79■■■■□ 3
CHFR-218ENST00000540963 SALL2Q9Y467 1007 aaPredicted RBP33.79■■■■□ 3
CHFR-218ENST00000540963 CETPP11597 493 aa33.78■■■■□ 3
CHFR-218ENST00000540963 RABL6Q3YEC7 729 aaPredicted RBP33.78■■■■□ 3
CHFR-218ENST00000540963 ERO1BQ86YB8 467 aa33.78■■■■□ 3
CHFR-218ENST00000540963 ZDHHC15Q96MV8 337 aa33.78■■■■□ 3
CHFR-218ENST00000540963 SUGT1Q9Y2Z0 365 aa33.78■■■■□ 3
CHFR-218ENST00000540963 PTCH2Q9Y6C5 1203 aa33.78■■■■□ 3
CHFR-218ENST00000540963 TLR2O60603 784 aa33.77■■■■□ 3
CHFR-218ENST00000540963 GNRH1P01148 92 aa33.77■■■■□ 3
CHFR-218ENST00000540963 SPINK5Q9NQ38 1064 aaPredicted RBP33.77■■■■□ 3
CHFR-218ENST00000540963 TMOD2Q9NZR1 351 aa33.77■■■■□ 3
CHFR-218ENST00000540963 NBPF7P0C2Y1 421 aaPredicted RBP33.76■■■□□ 2.99
CHFR-218ENST00000540963 MAST3O60307 1309 aa33.76■■■□□ 2.99
CHFR-218ENST00000540963 FRAT2O75474 233 aaPredicted RBP33.75■■■□□ 2.99
CHFR-218ENST00000540963 GRIK5Q16478 980 aa33.75■■■□□ 2.99
CHFR-218ENST00000540963 SNCAIPQ9Y6H5 919 aa33.75■■■□□ 2.99
CHFR-218ENST00000540963 KIF16BQ96L93 1317 aa33.75■■■□□ 2.99
CHFR-218ENST00000540963 RPAP1Q9BWH6 1393 aaPredicted RBP33.74■■■□□ 2.99
CHFR-218ENST00000540963 PDE8BO95263 885 aa33.74■■■□□ 2.99
CHFR-218ENST00000540963 SNAPC2Q13487 334 aa33.74■■■□□ 2.99
CHFR-218ENST00000540963 KIF22Q14807 665 aa33.74■■■□□ 2.99
CHFR-218ENST00000540963 PRMT2P55345 433 aa33.73■■■□□ 2.99
CHFR-218ENST00000540963 CHAF1AQ13111 956 aaPredicted RBP33.73■■■□□ 2.99
CHFR-218ENST00000540963 METTL24Q5JXM2 366 aa33.73■■■□□ 2.99
CHFR-218ENST00000540963 VGLL2Q8N8G2 317 aa33.73■■■□□ 2.99
CHFR-218ENST00000540963 BICC1Q9H694 974 aaKnown RBP33.73■■■□□ 2.99
CHFR-218ENST00000540963 IQSEC3Q9UPP2 1182 aaPredicted RBP33.73■■■□□ 2.99
CHFR-218ENST00000540963 PPIL2Q13356 520 aa33.72■■■□□ 2.99
CHFR-218ENST00000540963 WRNIP1Q96S55 665 aa33.72■■■□□ 2.99
CHFR-218ENST00000540963 ZEB1P37275 1124 aaPredicted RBP33.71■■■□□ 2.99
CHFR-218ENST00000540963 LACTBP83111 547 aaPredicted RBP33.71■■■□□ 2.99
CHFR-218ENST00000540963 SLC4A8Q2Y0W8 1093 aa33.71■■■□□ 2.99
CHFR-218ENST00000540963 DCAF15Q66K64 600 aa33.71■■■□□ 2.99
CHFR-218ENST00000540963 BTBD19C9JJ37 291 aa33.7■■■□□ 2.99
CHFR-218ENST00000540963 IRF6O14896 467 aa33.7■■■□□ 2.99
CHFR-218ENST00000540963 LRRC24Q50LG9 513 aa33.7■■■□□ 2.99
CHFR-218ENST00000540963 APOBEC3HQ6NTF7 200 aaKnown RBP33.7■■■□□ 2.99
CHFR-218ENST00000540963 HHIPL2Q6UWX4 724 aa33.7■■■□□ 2.99
CHFR-218ENST00000540963 CACNB3P54284 484 aa33.69■■■□□ 2.98
CHFR-218ENST00000540963 PPATQ06203 517 aa33.68■■■□□ 2.98
CHFR-218ENST00000540963 ANKRD44Q8N8A2 993 aa33.68■■■□□ 2.98
CHFR-218ENST00000540963 ZKSCAN4Q969J2 545 aaPredicted RBP33.68■■■□□ 2.98
CHFR-218ENST00000540963 MYH13Q9UKX3 1938 aa33.67■■■□□ 2.98
CHFR-218ENST00000540963 BCAMP50895 628 aa33.66■■■□□ 2.98
CHFR-218ENST00000540963 FXR1P51114 621 aaKnown RBP eCLIP33.66■■■□□ 2.98
CHFR-218ENST00000540963 ZNF341Q9BYN7 854 aa33.66■■■□□ 2.98
CHFR-218ENST00000540963 IFIT1P09914 478 aaKnown RBP33.65■■■□□ 2.98
CHFR-218ENST00000540963 PUM3Q15397 648 aaKnown RBP33.65■■■□□ 2.98
CHFR-218ENST00000540963 ZSWIM8A7E2V4 1837 aa33.65■■■□□ 2.98
CHFR-218ENST00000540963 FGFR2P21802 821 aa33.64■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms