RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 SERPINA10Q9UK55 444 aa21.3■■□□□ 1
CLSTN3-210ENST00000540931 SCN9AQ15858 1988 aa21.3■■□□□ 1
CLSTN3-210ENST00000540931 SCNN1DP51172 638 aa21.29■■□□□ 1
CLSTN3-210ENST00000540931 CERS3Q8IU89 383 aa21.29■■□□□ 1
CLSTN3-210ENST00000540931 BCL11AQ9H165 835 aa21.29■■□□□ 1
CLSTN3-210ENST00000540931 LRP2BPQ9P2M1 347 aa21.29■■□□□ 1
CLSTN3-210ENST00000540931 MAP3K12Q12852 859 aa21.28■■□□□ 1
CLSTN3-210ENST00000540931 ZSCAN25Q6NSZ9 544 aa21.28■■□□□ 1
CLSTN3-210ENST00000540931 MICALL2Q8IY33 904 aa21.28■■□□□ 1
CLSTN3-210ENST00000540931 MTMR14Q8NCE2 650 aa21.28■■□□□ 1
CLSTN3-210ENST00000540931 ZC3H15Q8WU90 426 aaKnown RBP21.28■■□□□ 1
CLSTN3-210ENST00000540931 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.28■■□□□ 1
CLSTN3-210ENST00000540931 ABCF2Q9UG63 623 aa21.28■■□□□ 1
CLSTN3-210ENST00000540931 TTF2Q9UNY4 1162 aaKnown RBP21.28■■□□□ 1
CLSTN3-210ENST00000540931 MYO1BO43795 1136 aa21.27■■□□□ 1
CLSTN3-210ENST00000540931 MAP4K4O95819 1239 aaPredicted RBP21.27■■□□□ 1
CLSTN3-210ENST00000540931 EPHX2P34913 555 aa21.27■■□□□ 1
CLSTN3-210ENST00000540931 PDE1AP54750 535 aa21.27■■□□□ 1
CLSTN3-210ENST00000540931 HHIPL2Q6UWX4 724 aa21.27■■□□□ 1
CLSTN3-210ENST00000540931 DZIP1Q86YF9 867 aaKnown RBP21.27■■□□□ 1
CLSTN3-210ENST00000540931 TEKT1Q969V4 418 aa21.27■■□□□ 1
CLSTN3-210ENST00000540931 ZBTB12Q9Y330 459 aaPredicted RBP21.27■■□□□ 1
CLSTN3-210ENST00000540931 SALL3Q9BXA9 1300 aa21.27■□□□□ 0.99
CLSTN3-210ENST00000540931 KIAA0825Q8IV33 1275 aa21.26■□□□□ 0.99
CLSTN3-210ENST00000540931 PAG1Q9NWQ8 432 aa21.26■□□□□ 0.99
CLSTN3-210ENST00000540931 ZAP70P43403 619 aa21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 DLGAP5Q15398 846 aa21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 CHADLQ6NUI6 762 aa21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 CERS5Q8N5B7 392 aa21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 FAM163AQ96GL9 167 aaPredicted RBP21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 NOL10Q9BSC4 688 aaKnown RBP21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 BOLA2Q9H3K6 86 aa21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 TAF1DQ9H5J8 278 aaPredicted RBP21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 MYOZ2Q9NPC6 264 aa21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 CREBZFQ9NS37 354 aa21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 RAI14Q9P0K7 980 aa21.25■□□□□ 0.99
CLSTN3-210ENST00000540931 CYP2E1P05181 493 aaPredicted RBP21.24■□□□□ 0.99
CLSTN3-210ENST00000540931 DNAJC2Q99543 621 aaKnown RBP21.24■□□□□ 0.99
CLSTN3-210ENST00000540931 ZFYP08048 801 aaPredicted RBP21.23■□□□□ 0.99
CLSTN3-210ENST00000540931 POTEIP0CG38 1075 aa21.23■□□□□ 0.99
CLSTN3-210ENST00000540931 POTEJP0CG39 1038 aa21.23■□□□□ 0.99
CLSTN3-210ENST00000540931 EPS15P42566 896 aa21.23■□□□□ 0.99
CLSTN3-210ENST00000540931 SCARF1Q14162 830 aa21.23■□□□□ 0.99
CLSTN3-210ENST00000540931 PLEKHM2Q8IWE5 1019 aa21.23■□□□□ 0.99
CLSTN3-210ENST00000540931 EVI5LQ96CN4 794 aa21.23■□□□□ 0.99
CLSTN3-210ENST00000540931 SNRKQ9NRH2 765 aa21.23■□□□□ 0.99
CLSTN3-210ENST00000540931 JAG2Q9Y219 1238 aa21.23■□□□□ 0.99
CLSTN3-210ENST00000540931 AKAP11Q9UKA4 1901 aa21.23■□□□□ 0.99
CLSTN3-210ENST00000540931 COL1A1P02452 1464 aaPredicted RBP21.22■□□□□ 0.99
CLSTN3-210ENST00000540931 PLCG2P16885 1265 aa21.22■□□□□ 0.99
CLSTN3-210ENST00000540931 RBM5P52756 815 aaKnown RBP eCLIP21.22■□□□□ 0.99
CLSTN3-210ENST00000540931 KIF4BQ2VIQ3 1234 aa21.22■□□□□ 0.99
CLSTN3-210ENST00000540931 PI4K2BQ8TCG2 481 aa21.22■□□□□ 0.99
CLSTN3-210ENST00000540931 ZDHHC15Q96MV8 337 aa21.22■□□□□ 0.99
CLSTN3-210ENST00000540931 ZNF646O15015 1829 aaPredicted RBP21.21■□□□□ 0.99
CLSTN3-210ENST00000540931 GOLIM4O00461 696 aa21.21■□□□□ 0.99
CLSTN3-210ENST00000540931 IDH1O75874 414 aaKnown RBP21.21■□□□□ 0.99
CLSTN3-210ENST00000540931 BAG3O95817 575 aa21.21■□□□□ 0.99
CLSTN3-210ENST00000540931 PRDX5P30044 214 aa21.21■□□□□ 0.99
CLSTN3-210ENST00000540931 CRKP46108 304 aa21.21■□□□□ 0.99
CLSTN3-210ENST00000540931 NAA16Q6N069 864 aaPredicted RBP21.21■□□□□ 0.99
CLSTN3-210ENST00000540931 LDHDQ86WU2 507 aa21.21■□□□□ 0.99
CLSTN3-210ENST00000540931 CNTROBQ8N137 903 aa21.21■□□□□ 0.99
CLSTN3-210ENST00000540931 MKRN1Q9UHC7 482 aaKnown RBP21.21■□□□□ 0.99
CLSTN3-210ENST00000540931 F8W031 263 aaPredicted RBP21.2■□□□□ 0.98
CLSTN3-210ENST00000540931 CFAP100Q494V2 611 aa21.2■□□□□ 0.98
CLSTN3-210ENST00000540931 PI16Q6UXB8 463 aa21.2■□□□□ 0.98
CLSTN3-210ENST00000540931 KBTBD3Q8NAB2 608 aa21.2■□□□□ 0.98
CLSTN3-210ENST00000540931 NSUN4Q96CB9 384 aaKnown RBP21.2■□□□□ 0.98
CLSTN3-210ENST00000540931 MXD3Q9BW11 206 aa21.2■□□□□ 0.98
CLSTN3-210ENST00000540931 TMOD2Q9NZR1 351 aa21.2■□□□□ 0.98
CLSTN3-210ENST00000540931 PITPNM2Q9BZ72 1349 aa21.2■□□□□ 0.98
CLSTN3-210ENST00000540931 MECOMQ03112 1051 aa21.19■□□□□ 0.98
CLSTN3-210ENST00000540931 TNFAIP1Q13829 316 aa21.19■□□□□ 0.98
CLSTN3-210ENST00000540931 PGAP2Q9UHJ9 254 aa21.19■□□□□ 0.98
CLSTN3-210ENST00000540931 SPDYE2BA6NHP3 402 aa21.18■□□□□ 0.98
CLSTN3-210ENST00000540931 HIP1O00291 1037 aa21.18■□□□□ 0.98
CLSTN3-210ENST00000540931 SPDYE6P0CI01 402 aa21.18■□□□□ 0.98
CLSTN3-210ENST00000540931 UBE3CQ15386 1083 aa21.18■□□□□ 0.98
CLSTN3-210ENST00000540931 TBC1D9Q6ZT07 1266 aa21.18■□□□□ 0.98
CLSTN3-210ENST00000540931 OTUD7AQ8TE49 926 aaPredicted RBP21.18■□□□□ 0.98
CLSTN3-210ENST00000540931 DCPSQ96C86 337 aaKnown RBP21.18■□□□□ 0.98
CLSTN3-210ENST00000540931 GAKO14976 1311 aa21.18■□□□□ 0.98
CLSTN3-210ENST00000540931 PASKQ96RG2 1323 aa21.18■□□□□ 0.98
CLSTN3-210ENST00000540931 WNT10BO00744 389 aa21.17■□□□□ 0.98
CLSTN3-210ENST00000540931 EAPPQ56P03 285 aaPredicted RBP21.17■□□□□ 0.98
CLSTN3-210ENST00000540931 SLC9C2Q5TAH2 1124 aa21.17■□□□□ 0.98
CLSTN3-210ENST00000540931 FKBP1CQ5VVH2 108 aa21.17■□□□□ 0.98
CLSTN3-210ENST00000540931 SAMD7Q7Z3H4 446 aa21.17■□□□□ 0.98
CLSTN3-210ENST00000540931 APOBEC3FQ8IUX4 373 aaKnown RBP21.17■□□□□ 0.98
CLSTN3-210ENST00000540931 ZBED3Q96IU2 234 aaPredicted RBP21.17■□□□□ 0.98
CLSTN3-210ENST00000540931 PIH1D3Q9NQM4 214 aaKnown RBP21.17■□□□□ 0.98
CLSTN3-210ENST00000540931 MROH7-TTC4A0A0A0MT08 1334 aa21.17■□□□□ 0.98
CLSTN3-210ENST00000540931 RFX7Q2KHR2 1363 aa21.17■□□□□ 0.98
CLSTN3-210ENST00000540931 CNTNAP1P78357 1384 aa21.16■□□□□ 0.98
CLSTN3-210ENST00000540931 TNNI2P48788 182 aa21.16■□□□□ 0.98
CLSTN3-210ENST00000540931 TBC1D10BQ4KMP7 808 aaPredicted RBP21.16■□□□□ 0.98
CLSTN3-210ENST00000540931 RBM26Q5T8P6 1007 aaKnown RBP21.16■□□□□ 0.98
CLSTN3-210ENST00000540931 CLEC11AQ9Y240 323 aa21.16■□□□□ 0.98
CLSTN3-210ENST00000540931 GPR75-ASB3A0A0A6YYF3 556 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms