RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 LMBR1Q8WVP7 490 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 PLEKHG4BQ96PX9 1271 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 RTEL1Q9NZ71 1219 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 SLAIN2Q9P270 581 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 ZSCAN9O15535 394 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-214ENST00000540539 STX6O43752 255 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 SDSP20132 328 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 KCNJ6P48051 423 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 SLC8A3P57103 927 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 USP4Q13107 963 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 CEP85LQ5SZL2 805 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 SIRT2Q8IXJ6 389 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 OR8K1Q8NGG5 319 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 AFAP1L1Q8TED9 768 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 EZH1Q92800 747 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-214ENST00000540539 SLX1AQ9BQ83 275 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 L1RE1Q9UN81 338 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 SYT1P21579 422 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 IQCB1Q15051 598 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 THEMIS2Q5TEJ8 643 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 RBM43Q6ZSC3 357 aaKnown RBP10.84□□□□□ -0.67
CLIP1-214ENST00000540539 SPATA21Q7Z572 469 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 CEP57Q86XR8 500 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 OSBPL5Q9H0X9 879 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-214ENST00000540539 KLC4Q9NSK0 619 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.84□□□□□ -0.67
CLIP1-214ENST00000540539 ATP6V1DQ9Y5K8 247 aa10.84□□□□□ -0.67
CLIP1-214ENST00000540539 GOLGA6L19H0YKK7 550 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 SHOX2O60902 331 aaPredicted RBP10.83□□□□□ -0.68
CLIP1-214ENST00000540539 RBM12BQ8IXT5 1001 aaKnown RBP10.83□□□□□ -0.68
CLIP1-214ENST00000540539 MAB21L3Q8N8X9 362 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 GOLGA1Q92805 767 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 TSR2Q969E8 191 aaKnown RBP10.83□□□□□ -0.68
CLIP1-214ENST00000540539 HOMER3Q9NSC5 361 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 PALD1Q9ULE6 856 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.83□□□□□ -0.68
CLIP1-214ENST00000540539 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.83□□□□□ -0.68
CLIP1-214ENST00000540539 EDC4Q6P2E9 1401 aaKnown RBP10.83□□□□□ -0.68
CLIP1-214ENST00000540539 TPD52L2O43399 206 aaKnown RBP10.83□□□□□ -0.68
CLIP1-214ENST00000540539 RNF40O75150 1001 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 MFSD4BQ5TF39 518 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 KIAA1328Q86T90 577 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 PROCA1Q8NCQ7 364 aaPredicted RBP10.83□□□□□ -0.68
CLIP1-214ENST00000540539 RUNDC1Q96C34 613 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 ATP6V0A4Q9HBG4 840 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 DACT1Q9NYF0 836 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 KIF1AQ12756 1690 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 USP6P35125 1406 aa10.83□□□□□ -0.68
CLIP1-214ENST00000540539 FOXO3O43524 673 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 IFIT2P09913 472 aaKnown RBP10.82□□□□□ -0.68
CLIP1-214ENST00000540539 USP5P45974 858 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 LAMB3Q13751 1172 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 ARMCX5Q6P1M9 558 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 TTLL7Q6ZT98 887 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 DDX46Q7L014 1031 aaKnown RBP10.82□□□□□ -0.68
CLIP1-214ENST00000540539 B4GALNT2Q8NHY0 566 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 H7C1W4 665 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 CASP8Q14790 479 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 ZRSR2Q15696 482 aaKnown RBP10.82□□□□□ -0.68
CLIP1-214ENST00000540539 YIPF2Q9BWQ6 316 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 TMEM165Q9HC07 324 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 MRFAP1Q9Y605 127 aa10.82□□□□□ -0.68
CLIP1-214ENST00000540539 ZEB2O60315 1214 aa10.81□□□□□ -0.68
CLIP1-214ENST00000540539 RANBP1P43487 201 aa10.81□□□□□ -0.68
CLIP1-214ENST00000540539 EXOSC9Q06265 439 aaKnown RBP10.81□□□□□ -0.68
CLIP1-214ENST00000540539 PSME1Q06323 249 aa10.81□□□□□ -0.68
CLIP1-214ENST00000540539 BRINP3Q76B58 766 aa10.81□□□□□ -0.68
CLIP1-214ENST00000540539 UPF3BQ9BZI7 483 aaKnown RBP10.81□□□□□ -0.68
CLIP1-214ENST00000540539 TSGA10Q9BZW7 698 aa10.81□□□□□ -0.68
CLIP1-214ENST00000540539 TSPYL2Q9H2G4 693 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-214ENST00000540539 ABCB6Q9NP58 842 aa10.81□□□□□ -0.68
CLIP1-214ENST00000540539 MIS18AQ9NYP9 233 aa10.81□□□□□ -0.68
CLIP1-214ENST00000540539 ATXN2Q99700 1313 aaKnown RBP10.81□□□□□ -0.68
CLIP1-214ENST00000540539 NRKQ7Z2Y5 1582 aa10.81□□□□□ -0.68
CLIP1-214ENST00000540539 PRPF6O94906 941 aaKnown RBP10.81□□□□□ -0.68
CLIP1-214ENST00000540539 EZRP15311 586 aaKnown RBP10.81□□□□□ -0.68
CLIP1-214ENST00000540539 TTC6Q86TZ1 520 aa10.81□□□□□ -0.68
CLIP1-214ENST00000540539 C16orf71Q8IYS4 520 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-214ENST00000540539 OTUD7AQ8TE49 926 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-214ENST00000540539 ANKZF1Q9H8Y5 726 aa10.81□□□□□ -0.68
CLIP1-214ENST00000540539 FYB1O15117 783 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 EPB41L2O43491 1005 aaKnown RBP10.8□□□□□ -0.68
CLIP1-214ENST00000540539 PPP1R12BO60237 982 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-214ENST00000540539 RASSF9O75901 435 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 FCHSD2O94868 740 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 FMNL1O95466 1100 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-214ENST00000540539 RPSAP08865 295 aaKnown RBP10.8□□□□□ -0.68
CLIP1-214ENST00000540539 PAX3P23760 479 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 GBP2P32456 591 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-214ENST00000540539 C11orf57Q6ZUT1 292 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-214ENST00000540539 CCDC150Q8NCX0 1101 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 PNKPQ96T60 521 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 CLSTN2Q9H4D0 955 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 KAT14Q9H8E8 782 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 RAB21Q9UL25 225 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 MYO6Q9UM54 1294 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 KIF20BQ96Q89 1820 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 SHPRHQ149N8 1683 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 SSH2Q76I76 1423 aa10.8□□□□□ -0.68
CLIP1-214ENST00000540539 RBM47A0AV96 593 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms