RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-223ENST00000540475 RBM5P52756 815 aaKnown RBP eCLIP16.37■□□□□ 0.21
SEMA4D-223ENST00000540475 MTX1Q13505 466 aa16.37■□□□□ 0.21
SEMA4D-223ENST00000540475 TNFAIP1Q13829 316 aa16.37■□□□□ 0.21
SEMA4D-223ENST00000540475 NBPF12Q5TAG4 269 aaPredicted RBP16.37■□□□□ 0.21
SEMA4D-223ENST00000540475 SPRYD7Q5W111 196 aa16.37■□□□□ 0.21
SEMA4D-223ENST00000540475 TEPSINQ96N21 525 aa16.37■□□□□ 0.21
SEMA4D-223ENST00000540475 MEIS3Q99687 375 aa16.37■□□□□ 0.21
SEMA4D-223ENST00000540475 MCOLN1Q9GZU1 580 aa16.37■□□□□ 0.21
SEMA4D-223ENST00000540475 IQSEC3Q9UPP2 1182 aaPredicted RBP16.37■□□□□ 0.21
SEMA4D-223ENST00000540475 LRRFIP2Q9Y608 721 aaKnown RBP16.37■□□□□ 0.21
SEMA4D-223ENST00000540475 SLC5A1P13866 664 aa16.36■□□□□ 0.21
SEMA4D-223ENST00000540475 IL15P40933 162 aaPredicted RBP16.36■□□□□ 0.21
SEMA4D-223ENST00000540475 ZDHHC15Q96MV8 337 aa16.36■□□□□ 0.21
SEMA4D-223ENST00000540475 TDRD3Q9H7E2 651 aaKnown RBP16.36■□□□□ 0.21
SEMA4D-223ENST00000540475 VEZTQ9HBM0 779 aa16.36■□□□□ 0.21
SEMA4D-223ENST00000540475 IPO8O15397 1037 aaKnown RBP16.35■□□□□ 0.21
SEMA4D-223ENST00000540475 GNAI3P08754 354 aa16.35■□□□□ 0.21
SEMA4D-223ENST00000540475 ZBTB48P10074 688 aaPredicted RBP16.35■□□□□ 0.21
SEMA4D-223ENST00000540475 INHBEP58166 350 aa16.35■□□□□ 0.21
SEMA4D-223ENST00000540475 SREBF2Q12772 1141 aa16.35■□□□□ 0.21
SEMA4D-223ENST00000540475 PRKG1Q13976 671 aa16.35■□□□□ 0.21
SEMA4D-223ENST00000540475 FKBP1CQ5VVH2 108 aa16.35■□□□□ 0.21
SEMA4D-223ENST00000540475 HHIPL2Q6UWX4 724 aa16.35■□□□□ 0.21
SEMA4D-223ENST00000540475 TEKT1Q969V4 418 aa16.35■□□□□ 0.21
SEMA4D-223ENST00000540475 FZD1Q9UP38 647 aa16.35■□□□□ 0.21
SEMA4D-223ENST00000540475 FRAT2O75474 233 aaPredicted RBP16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 TRIM27P14373 513 aa16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 RGS19P49795 217 aa16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 CHAF1AQ13111 956 aaPredicted RBP16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 APOBEC3HQ6NTF7 200 aaKnown RBP16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 ATF7IPQ6VMQ6 1270 aa16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 MIER1Q8N108 512 aa16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 WDR66Q8TBY9 1149 aa16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 SLC10A4Q96EP9 437 aa16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 CEP126Q9P2H0 1117 aa16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 MAST3O60307 1309 aa16.34■□□□□ 0.21
SEMA4D-223ENST00000540475 BCAR3O75815 825 aa16.33■□□□□ 0.2
SEMA4D-223ENST00000540475 IREB2P48200 963 aaKnown RBP16.33■□□□□ 0.2
SEMA4D-223ENST00000540475 DGKZQ13574 1117 aa16.33■□□□□ 0.2
SEMA4D-223ENST00000540475 ATP2B3Q16720 1220 aa16.33■□□□□ 0.2
SEMA4D-223ENST00000540475 FAM83AQ86UY5 434 aa16.33■□□□□ 0.2
SEMA4D-223ENST00000540475 WNK4Q96J92 1243 aa16.33■□□□□ 0.2
SEMA4D-223ENST00000540475 CLMNQ96JQ2 1002 aa16.33■□□□□ 0.2
SEMA4D-223ENST00000540475 SIL1Q9H173 461 aa16.33■□□□□ 0.2
SEMA4D-223ENST00000540475 SALL1Q9NSC2 1324 aa16.33■□□□□ 0.2
SEMA4D-223ENST00000540475 TESPA1A2RU30 521 aaPredicted RBP16.32■□□□□ 0.2
SEMA4D-223ENST00000540475 MANSC4A6NHS7 340 aaPredicted RBP16.32■□□□□ 0.2
SEMA4D-223ENST00000540475 SEMA3EO15041 775 aa16.32■□□□□ 0.2
SEMA4D-223ENST00000540475 TNNI2P48788 182 aa16.32■□□□□ 0.2
SEMA4D-223ENST00000540475 ANKRD13AQ8IZ07 590 aa16.32■□□□□ 0.2
SEMA4D-223ENST00000540475 PA2G4Q9UQ80 394 aaKnown RBP16.32■□□□□ 0.2
SEMA4D-223ENST00000540475 DIEXFQ68CQ4 756 aaKnown RBP16.31■□□□□ 0.2
SEMA4D-223ENST00000540475 CDAN1Q8IWY9 1227 aa16.31■□□□□ 0.2
SEMA4D-223ENST00000540475 MYH2Q9UKX2 1941 aa16.31■□□□□ 0.2
SEMA4D-223ENST00000540475 PDS5AQ29RF7 1337 aaKnown RBP16.3■□□□□ 0.2
SEMA4D-223ENST00000540475 TCP10L2B9ZVM9 353 aa16.3■□□□□ 0.2
SEMA4D-223ENST00000540475 SRGAP3O43295 1099 aa16.3■□□□□ 0.2
SEMA4D-223ENST00000540475 TBC1D8O95759 1140 aa16.3■□□□□ 0.2
SEMA4D-223ENST00000540475 ALDH1A1P00352 501 aa16.3■□□□□ 0.2
SEMA4D-223ENST00000540475 GJA5P36382 358 aa16.3■□□□□ 0.2
SEMA4D-223ENST00000540475 MKRN3Q13064 507 aaKnown RBP16.3■□□□□ 0.2
SEMA4D-223ENST00000540475 TMEM39BQ9GZU3 492 aa16.3■□□□□ 0.2
SEMA4D-223ENST00000540475 GNL3LQ9NVN8 582 aaKnown RBP16.3■□□□□ 0.2
SEMA4D-223ENST00000540475 DENND2AQ9ULE3 1009 aa16.3■□□□□ 0.2
SEMA4D-223ENST00000540475 TNRC18O15417 2968 aaPredicted RBP16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 RPAP1Q9BWH6 1393 aaPredicted RBP16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 GPR25O00155 361 aa16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 GNAI2P04899 355 aa16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 PHKA1P46020 1223 aa16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 CTU1Q7Z7A3 348 aaKnown RBP16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 IFNL1Q8IU54 200 aa16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 ZNF296Q8WUU4 475 aaPredicted RBP16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 TNNQ9UQP3 1299 aa16.29■□□□□ 0.2
SEMA4D-223ENST00000540475 CCDC85CA6NKD9 419 aa16.28■□□□□ 0.2
SEMA4D-223ENST00000540475 PKN2Q16513 984 aaKnown RBP16.28■□□□□ 0.2
SEMA4D-223ENST00000540475 CCDC102BQ68D86 513 aa16.28■□□□□ 0.2
SEMA4D-223ENST00000540475 R3HDMLQ9H3Y0 253 aa16.28■□□□□ 0.2
SEMA4D-223ENST00000540475 HTTP42858 3142 aa16.28■□□□□ 0.2
SEMA4D-223ENST00000540475 IGF2BP3O00425 579 aaKnown RBP eCLIP16.27■□□□□ 0.2
SEMA4D-223ENST00000540475 ADORA1P30542 326 aa16.27■□□□□ 0.2
SEMA4D-223ENST00000540475 TIMM10P62072 90 aa16.27■□□□□ 0.2
SEMA4D-223ENST00000540475 MAP3K9P80192 1104 aa16.27■□□□□ 0.2
SEMA4D-223ENST00000540475 HNRNPUQ00839 825 aaKnown RBP eCLIP16.27■□□□□ 0.2
SEMA4D-223ENST00000540475 ZKSCAN2Q63HK3 967 aa16.27■□□□□ 0.2
SEMA4D-223ENST00000540475 MS4A4AQ96JQ5 239 aa16.27■□□□□ 0.2
SEMA4D-223ENST00000540475 AKAP2Q9Y2D5 859 aa16.27■□□□□ 0.2
SEMA4D-223ENST00000540475 DAGLAQ9Y4D2 1042 aa16.27■□□□□ 0.2
SEMA4D-223ENST00000540475 AK9Q5TCS8 1911 aa16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 A0A1B0GUL7 405 aa16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 PRDX5P30044 214 aa16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 CACNB3P54284 484 aa16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 TMEM57Q8N5G2 664 aa16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 FAM151AQ8WW52 585 aa16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 FRAT1Q92837 279 aaPredicted RBP16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 OPTNQ96CV9 577 aa16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 HOOK2Q96ED9 719 aa16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 FAM163AQ96GL9 167 aaPredicted RBP16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 PTPN18Q99952 460 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms