RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 FAM13BQ9NYF5 915 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 RFC4P35249 363 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 SUSD4Q5VX71 490 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 PATL2C9JE40 543 aaKnown RBP12.51□□□□□ -0.41
CLIP1-213ENST00000540338 DZIP1Q86YF9 867 aaKnown RBP12.51□□□□□ -0.41
CLIP1-213ENST00000540338 NOL7Q9UMY1 257 aaKnown RBP12.51□□□□□ -0.41
CLIP1-213ENST00000540338 RTCBQ9Y3I0 505 aaKnown RBP12.51□□□□□ -0.41
CLIP1-213ENST00000540338 RIPOR2Q9Y4F9 1068 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 TAF6LQ9Y6J9 622 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 SPTLC2O15270 562 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 LIG1P18858 919 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 RXRAP19793 462 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 MCAMP43121 646 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 CLSTN2Q9H4D0 955 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 LMO7Q8WWI1 1683 aa12.5□□□□□ -0.41
CLIP1-213ENST00000540338 RTN1Q16799 776 aa12.5□□□□□ -0.41
CLIP1-213ENST00000540338 SEC31BQ9NQW1 1179 aa12.5□□□□□ -0.41
CLIP1-213ENST00000540338 CAMTA1Q9Y6Y1 1673 aa12.5□□□□□ -0.41
CLIP1-213ENST00000540338 OTUD7BQ6GQQ9 843 aa12.5□□□□□ -0.41
CLIP1-213ENST00000540338 CATIPQ7Z7H3 387 aa12.5□□□□□ -0.41
CLIP1-213ENST00000540338 SMC2O95347 1197 aa12.5□□□□□ -0.41
CLIP1-213ENST00000540338 CDK11BP21127 795 aaKnown RBP12.5□□□□□ -0.41
CLIP1-213ENST00000540338 BCAMP50895 628 aa12.5□□□□□ -0.41
CLIP1-213ENST00000540338 DNAJC25Q9H1X3 360 aa12.49□□□□□ -0.41
CLIP1-213ENST00000540338 DENND2AQ9ULE3 1009 aa12.49□□□□□ -0.41
CLIP1-213ENST00000540338 GNPATO15228 680 aa12.49□□□□□ -0.41
CLIP1-213ENST00000540338 SCARF1Q14162 830 aa12.49□□□□□ -0.41
CLIP1-213ENST00000540338 CEP131Q9UPN4 1083 aa12.49□□□□□ -0.41
CLIP1-213ENST00000540338 HSP90AA2PQ14568 343 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-213ENST00000540338 IFNL3Q8IZI9 196 aa12.49□□□□□ -0.41
CLIP1-213ENST00000540338 CRNKL1Q9BZJ0 848 aaKnown RBP12.49□□□□□ -0.41
CLIP1-213ENST00000540338 ANKRD2Q9GZV1 360 aa12.49□□□□□ -0.41
CLIP1-213ENST00000540338 ABCC12Q96J65 1359 aa12.49□□□□□ -0.41
CLIP1-213ENST00000540338 CHRNDQ07001 517 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 SPTY2D1Q68D10 685 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-213ENST00000540338 STOX1Q6ZVD7 989 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 CTCFLQ8NI51 663 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-213ENST00000540338 PIH1D3Q9NQM4 214 aaKnown RBP12.48□□□□□ -0.41
CLIP1-213ENST00000540338 MTMR7Q9Y216 660 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 USP5P45974 858 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 FAM160A1Q05DH4 1040 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 KDM4FA0A1W2PPD8 638 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 SMTNL1A8MU46 457 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 CTDSPL2Q05D32 466 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 WWC3Q9ULE0 1092 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 TPD52L1Q16890 204 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-213ENST00000540338 AKNAD1Q5T1N1 836 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 KLHL34Q8N239 644 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 ZNF830Q96NB3 372 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-213ENST00000540338 USP28Q96RU2 1077 aa12.48□□□□□ -0.41
CLIP1-213ENST00000540338 RESTQ13127 1097 aa12.47□□□□□ -0.41
CLIP1-213ENST00000540338 LUZP1Q86V48 1076 aa12.47□□□□□ -0.41
CLIP1-213ENST00000540338 ANO8Q9HCE9 1232 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-213ENST00000540338 CCNL1Q9UK58 526 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-213ENST00000540338 EIF5P55010 431 aaKnown RBP12.47□□□□□ -0.41
CLIP1-213ENST00000540338 ZNF34Q8IZ26 560 aa12.47□□□□□ -0.41
CLIP1-213ENST00000540338 RPGRQ92834 1020 aaKnown RBP12.47□□□□□ -0.41
CLIP1-213ENST00000540338 MARCKSP29966 332 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-213ENST00000540338 FILIP1Q7Z7B0 1213 aa12.47□□□□□ -0.41
CLIP1-213ENST00000540338 ZKSCAN3Q9BRR0 538 aa12.47□□□□□ -0.41
CLIP1-213ENST00000540338 CLIP2Q9UDT6 1046 aa12.47□□□□□ -0.41
CLIP1-213ENST00000540338 EXOSC10Q01780 885 aaKnown RBP12.46□□□□□ -0.41
CLIP1-213ENST00000540338 NR1I2O75469 434 aa12.46□□□□□ -0.41
CLIP1-213ENST00000540338 SYKP43405 635 aa12.46□□□□□ -0.41
CLIP1-213ENST00000540338 PDE4BQ07343 736 aa12.46□□□□□ -0.41
CLIP1-213ENST00000540338 ZNF592Q92610 1267 aa12.46□□□□□ -0.41
CLIP1-213ENST00000540338 TTC12Q9H892 705 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-213ENST00000540338 MKNK2Q9HBH9 465 aa12.46□□□□□ -0.41
CLIP1-213ENST00000540338 RGPD2P0DJD1 1756 aa12.46□□□□□ -0.41
CLIP1-213ENST00000540338 RPS8P62241 208 aaKnown RBP12.46□□□□□ -0.41
CLIP1-213ENST00000540338 IFIT1BQ5T764 474 aaKnown RBP12.46□□□□□ -0.41
CLIP1-213ENST00000540338 A0A1B0GVL5 298 aa12.46□□□□□ -0.42
CLIP1-213ENST00000540338 BIN1O00499 593 aa12.46□□□□□ -0.42
CLIP1-213ENST00000540338 ADD1P35611 737 aaKnown RBP12.46□□□□□ -0.42
CLIP1-213ENST00000540338 RASGRF1Q13972 1273 aa12.46□□□□□ -0.42
CLIP1-213ENST00000540338 ANO1Q5XXA6 986 aa12.46□□□□□ -0.42
CLIP1-213ENST00000540338 FBXO18Q8NFZ0 1043 aa12.46□□□□□ -0.42
CLIP1-213ENST00000540338 GPHNQ9NQX3 736 aaPredicted RBP12.46□□□□□ -0.42
CLIP1-213ENST00000540338 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.46□□□□□ -0.42
CLIP1-213ENST00000540338 KDM3BQ7LBC6 1761 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 LDHCP07864 332 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 HIBADHP31937 336 aaKnown RBP12.45□□□□□ -0.42
CLIP1-213ENST00000540338 GYG1P46976 350 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 CLEC4GQ6UXB4 293 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 CREBRFQ8IUR6 639 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 CNNM3Q8NE01 707 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 SMARCC2Q8TAQ2 1214 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 CARMIL3Q8ND23 1372 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 OFD1O75665 1012 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 UBE4AQ14139 1066 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 PHKBQ93100 1093 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 MYL10Q9BUA6 226 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 TSPY2A6NKD2 308 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 YEATS4O95619 227 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 SERPINC1P01008 464 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 DHX8Q14562 1220 aaKnown RBP12.45□□□□□ -0.42
CLIP1-213ENST00000540338 KRT40Q6A162 431 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 PIBF1Q8WXW3 757 aa12.45□□□□□ -0.42
CLIP1-213ENST00000540338 STRBPQ96SI9 672 aaKnown RBP12.45□□□□□ -0.42
CLIP1-213ENST00000540338 DACH1Q9UI36 760 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms