RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 FERMT3Q86UX7 667 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 ANKRD18AQ8IVF6 992 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 SYNE4Q8N205 404 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 CHAMP1Q96JM3 812 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 KRT23Q9C075 422 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 PIH1D3Q9NQM4 214 aaKnown RBP7.77□□□□□ -1.17
USP28-206ENST00000538224 NAP1L2Q9ULW6 460 aaPredicted RBP7.77□□□□□ -1.17
USP28-206ENST00000538224 ANGEL1Q9UNK9 670 aaKnown RBP7.77□□□□□ -1.17
USP28-206ENST00000538224 CACNA1SQ13698 1873 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 KLF18A0A0U1RQI7 1052 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 TCRBV5S4A2TA0A5A2 114 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 PATL2C9JE40 543 aaKnown RBP7.76□□□□□ -1.17
USP28-206ENST00000538224 FOXP2O15409 715 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 APPP05067 770 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 NT5C2P49902 561 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 RCAN1P53805 252 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 CACNB1Q02641 598 aaPredicted RBP7.76□□□□□ -1.17
USP28-206ENST00000538224 SART3Q15020 963 aaKnown RBP7.76□□□□□ -1.17
USP28-206ENST00000538224 BICD2Q8TD16 824 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 STRBPQ96SI9 672 aaKnown RBP7.76□□□□□ -1.17
USP28-206ENST00000538224 LRRC2Q9BYS8 371 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 NAPBQ9H115 298 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 TNMDQ9H2S6 317 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 RNF41Q9H4P4 317 aaPredicted RBP7.76□□□□□ -1.17
USP28-206ENST00000538224 RRAGDQ9NQL2 400 aaPredicted RBP7.76□□□□□ -1.17
USP28-206ENST00000538224 PODXL2Q9NZ53 605 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 ZNF804BA4D1E1 1349 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 STK36Q9NRP7 1315 aa7.76□□□□□ -1.17
USP28-206ENST00000538224 CTDNEP1O95476 244 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 TPM3P06753 285 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 PCP11498 1178 aaKnown RBP7.75□□□□□ -1.17
USP28-206ENST00000538224 METAP2P50579 478 aaKnown RBP eCLIP7.75□□□□□ -1.17
USP28-206ENST00000538224 HAND2P61296 217 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 CHRNDQ07001 517 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 RASGRF1Q13972 1273 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 COL9A3Q14050 684 aaPredicted RBP7.75□□□□□ -1.17
USP28-206ENST00000538224 FAM98CQ17RN3 349 aaKnown RBP7.75□□□□□ -1.17
USP28-206ENST00000538224 SLFNL1Q499Z3 407 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 CAVIN4Q5BKX8 364 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 SLC10A5Q5PT55 438 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 TTLL5Q6EMB2 1281 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 PI16Q6UXB8 463 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 SYNE3Q6ZMZ3 975 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 CCDC73Q6ZRK6 1079 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 RBM43Q6ZSC3 357 aaKnown RBP7.75□□□□□ -1.17
USP28-206ENST00000538224 SGMS1Q86VZ5 419 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 FNBP4Q8N3X1 1017 aaPredicted RBP7.75□□□□□ -1.17
USP28-206ENST00000538224 MAGEB6Q8N7X4 407 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 LINC00116Q8NCU8 138 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 KCNG4Q8TDN1 519 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 WASF1Q92558 559 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 DDX11Q96FC9 970 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 NGLY1Q96IV0 654 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 C8orf76Q96K31 380 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 FUCA2Q9BTY2 467 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 ANKRD2Q9GZV1 360 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 CLSTN2Q9H4D0 955 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 BSDC1Q9NW68 430 aaPredicted RBP7.75□□□□□ -1.17
USP28-206ENST00000538224 NARFQ9UHQ1 456 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 RCOR1Q9UKL0 485 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 WWC3Q9ULE0 1092 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 DENND2AQ9ULE3 1009 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 NOL7Q9UMY1 257 aaKnown RBP7.75□□□□□ -1.17
USP28-206ENST00000538224 MYH2Q9UKX2 1941 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 UBR3Q6ZT12 1888 aa7.75□□□□□ -1.17
USP28-206ENST00000538224 FAM177BA6PVY3 158 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 GOLGA6L6A8MZA4 724 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 UBAP1LF5GYI3 381 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 SH2B2O14492 632 aaPredicted RBP7.74□□□□□ -1.17
USP28-206ENST00000538224 ZPR1O75312 459 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 RPS6KA4O75676 772 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 MBD4O95243 580 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 YEATS4O95619 227 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 PTMAP06454 111 aaKnown RBP7.74□□□□□ -1.17
USP28-206ENST00000538224 GTF2E1P29083 439 aaPredicted RBP7.74□□□□□ -1.17
USP28-206ENST00000538224 LIFRP42702 1097 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 TDO2P48775 406 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 ANTXR2P58335 489 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 PIP4K2BP78356 416 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 CCT2P78371 535 aaKnown RBP7.74□□□□□ -1.17
USP28-206ENST00000538224 TRIM29Q14134 588 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 PPP2R5BQ15173 497 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 SASS6Q6UVJ0 657 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 TMTC2Q8N394 836 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 RNF214Q8ND24 703 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 FAM200AQ8TCP9 573 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 STAG1Q8WVM7 1258 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 SEC31BQ9NQW1 1179 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 LRP2BPQ9P2M1 347 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 ORC3Q9UBD5 711 aaPredicted RBP7.74□□□□□ -1.17
USP28-206ENST00000538224 ZKSCAN5Q9Y2L8 839 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 TAF1P21675 1872 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 NAV1Q8NEY1 1877 aa7.74□□□□□ -1.17
USP28-206ENST00000538224 TNRC6CQ9HCJ0 1690 aaKnown RBP7.73□□□□□ -1.17
USP28-206ENST00000538224 CCDC196A0A1B0GTZ2 297 aa7.73□□□□□ -1.17
USP28-206ENST00000538224 A0A1W2PQ27 194 aa7.73□□□□□ -1.17
USP28-206ENST00000538224 A0A1W2PQ64 194 aa7.73□□□□□ -1.17
USP28-206ENST00000538224 A0A1W2PQD8 194 aa7.73□□□□□ -1.17
USP28-206ENST00000538224 ERICH2A1L162 156 aa7.73□□□□□ -1.17
USP28-206ENST00000538224 CCDC69A6NI79 296 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms