RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 HDLBPQ00341 1268 aaKnown RBP18.32■□□□□ 0.52
USP28-204ENST00000537642 NOGQ13253 232 aa18.32■□□□□ 0.52
USP28-204ENST00000537642 G3BP1Q13283 466 aaKnown RBP eCLIP18.32■□□□□ 0.52
USP28-204ENST00000537642 SPDYE2Q495Y8 402 aa18.32■□□□□ 0.52
USP28-204ENST00000537642 CCDC102BQ68D86 513 aa18.32■□□□□ 0.52
USP28-204ENST00000537642 WDR66Q8TBY9 1149 aa18.32■□□□□ 0.52
USP28-204ENST00000537642 TDRD3Q9H7E2 651 aaKnown RBP18.32■□□□□ 0.52
USP28-204ENST00000537642 GNL3LQ9NVN8 582 aaKnown RBP18.32■□□□□ 0.52
USP28-204ENST00000537642 ZNF70Q9UC06 446 aaPredicted RBP18.32■□□□□ 0.52
USP28-204ENST00000537642 AKAP2Q9Y2D5 859 aa18.32■□□□□ 0.52
USP28-204ENST00000537642 UBE2Q2LH0YL09 131 aa18.31■□□□□ 0.52
USP28-204ENST00000537642 ZBTB22O15209 634 aa18.31■□□□□ 0.52
USP28-204ENST00000537642 SLC10A3P09131 477 aa18.31■□□□□ 0.52
USP28-204ENST00000537642 NF2P35240 595 aa18.31■□□□□ 0.52
USP28-204ENST00000537642 CTCFP49711 727 aaPredicted RBP18.31■□□□□ 0.52
USP28-204ENST00000537642 CCDC102AQ96A19 550 aa18.31■□□□□ 0.52
USP28-204ENST00000537642 XAGE2Q96GT9 111 aa18.31■□□□□ 0.52
USP28-204ENST00000537642 MRIQ9BWK5 157 aa18.31■□□□□ 0.52
USP28-204ENST00000537642 PPP2R3BQ9Y5P8 575 aa18.31■□□□□ 0.52
USP28-204ENST00000537642 SEMA3EO15041 775 aa18.3■□□□□ 0.52
USP28-204ENST00000537642 MS4A1P11836 297 aa18.3■□□□□ 0.52
USP28-204ENST00000537642 TTLL12Q14166 644 aaPredicted RBP18.3■□□□□ 0.52
USP28-204ENST00000537642 RASAL3Q86YV0 1011 aa18.3■□□□□ 0.52
USP28-204ENST00000537642 TEKT1Q969V4 418 aa18.3■□□□□ 0.52
USP28-204ENST00000537642 DENND2AQ9ULE3 1009 aa18.3■□□□□ 0.52
USP28-204ENST00000537642 SSC5DA1L4H1 1573 aa18.3■□□□□ 0.52
USP28-204ENST00000537642 MAST3O60307 1309 aa18.29■□□□□ 0.52
USP28-204ENST00000537642 HSPA8P11142 646 aaKnown RBP18.29■□□□□ 0.52
USP28-204ENST00000537642 PRKG1Q13976 671 aa18.29■□□□□ 0.52
USP28-204ENST00000537642 RASA3Q14644 834 aa18.29■□□□□ 0.52
USP28-204ENST00000537642 ZDHHC15Q96MV8 337 aa18.29■□□□□ 0.52
USP28-204ENST00000537642 SALL1Q9NSC2 1324 aa18.28■□□□□ 0.52
USP28-204ENST00000537642 PRDX5P30044 214 aa18.28■□□□□ 0.52
USP28-204ENST00000537642 RASGRF1Q13972 1273 aa18.28■□□□□ 0.52
USP28-204ENST00000537642 MVPQ14764 893 aaKnown RBP18.28■□□□□ 0.52
USP28-204ENST00000537642 NBPF12Q5TAG4 269 aaPredicted RBP18.28■□□□□ 0.52
USP28-204ENST00000537642 APOBEC3HQ6NTF7 200 aaKnown RBP18.28■□□□□ 0.52
USP28-204ENST00000537642 CEP85Q6P2H3 762 aa18.28■□□□□ 0.52
USP28-204ENST00000537642 HHIPL2Q6UWX4 724 aa18.28■□□□□ 0.52
USP28-204ENST00000537642 ARMC9Q7Z3E5 817 aa18.28■□□□□ 0.52
USP28-204ENST00000537642 NEUROD6Q96NK8 337 aa18.28■□□□□ 0.52
USP28-204ENST00000537642 FZD1Q9UP38 647 aa18.28■□□□□ 0.52
USP28-204ENST00000537642 SURF6O75683 361 aaKnown RBP18.27■□□□□ 0.52
USP28-204ENST00000537642 LBX1P52954 281 aa18.27■□□□□ 0.52
USP28-204ENST00000537642 KIF23Q02241 960 aaPredicted RBP18.27■□□□□ 0.52
USP28-204ENST00000537642 TNFAIP1Q13829 316 aa18.27■□□□□ 0.52
USP28-204ENST00000537642 BEGAINQ9BUH8 593 aa18.27■□□□□ 0.52
USP28-204ENST00000537642 PRDM10Q9NQV6 1147 aa18.27■□□□□ 0.52
USP28-204ENST00000537642 COG6Q9Y2V7 657 aa18.27■□□□□ 0.52
USP28-204ENST00000537642 NOP58Q9Y2X3 529 aaKnown RBP18.27■□□□□ 0.52
USP28-204ENST00000537642 TCP10L2B9ZVM9 353 aa18.26■□□□□ 0.51
USP28-204ENST00000537642 LDHBP07195 334 aaKnown RBP18.26■□□□□ 0.51
USP28-204ENST00000537642 DIXDC1Q155Q3 683 aa18.26■□□□□ 0.51
USP28-204ENST00000537642 SUPT20HL1Q3ZLR7 823 aa18.26■□□□□ 0.51
USP28-204ENST00000537642 ANGEL1Q9UNK9 670 aaKnown RBP18.26■□□□□ 0.51
USP28-204ENST00000537642 PDS5AQ29RF7 1337 aaKnown RBP18.25■□□□□ 0.51
USP28-204ENST00000537642 CACNB3P54284 484 aa18.25■□□□□ 0.51
USP28-204ENST00000537642 OS9Q13438 667 aaPredicted RBP18.25■□□□□ 0.51
USP28-204ENST00000537642 MAP3K11Q16584 847 aa18.25■□□□□ 0.51
USP28-204ENST00000537642 LDLRAD1Q5T700 205 aa18.25■□□□□ 0.51
USP28-204ENST00000537642 CDAN1Q8IWY9 1227 aa18.25■□□□□ 0.51
USP28-204ENST00000537642 TEPSINQ96N21 525 aa18.25■□□□□ 0.51
USP28-204ENST00000537642 GPR108Q9NPR9 543 aa18.25■□□□□ 0.51
USP28-204ENST00000537642 TSKSQ9UJT2 592 aa18.25■□□□□ 0.51
USP28-204ENST00000537642 DDX19BQ9UMR2 479 aa18.25■□□□□ 0.51
USP28-204ENST00000537642 DAGLAQ9Y4D2 1042 aa18.25■□□□□ 0.51
USP28-204ENST00000537642 MYH2Q9UKX2 1941 aa18.25■□□□□ 0.51
USP28-204ENST00000537642 AKAP11Q9UKA4 1901 aa18.24■□□□□ 0.51
USP28-204ENST00000537642 TNNI3KQ59H18 835 aa18.24■□□□□ 0.51
USP28-204ENST00000537642 GORABQ5T7V8 394 aa18.24■□□□□ 0.51
USP28-204ENST00000537642 ZGPATQ8N5A5 531 aaKnown RBP18.24■□□□□ 0.51
USP28-204ENST00000537642 CSRNP1Q96S65 589 aa18.24■□□□□ 0.51
USP28-204ENST00000537642 TMEM39BQ9GZU3 492 aa18.24■□□□□ 0.51
USP28-204ENST00000537642 FPGT-TNNI3KV9GXZ4 949 aa18.24■□□□□ 0.51
USP28-204ENST00000537642 CA12O43570 354 aa18.23■□□□□ 0.51
USP28-204ENST00000537642 PPP1R12BO60237 982 aaPredicted RBP18.23■□□□□ 0.51
USP28-204ENST00000537642 ARID4AP29374 1257 aaPredicted RBP18.23■□□□□ 0.51
USP28-204ENST00000537642 TNNI2P48788 182 aa18.23■□□□□ 0.51
USP28-204ENST00000537642 C20orf194Q5TEA3 1177 aa18.23■□□□□ 0.51
USP28-204ENST00000537642 ZBTB40Q9NUA8 1239 aa18.23■□□□□ 0.51
USP28-204ENST00000537642 HMG20BQ9P0W2 317 aa18.23■□□□□ 0.51
USP28-204ENST00000537642 USP2O75604 605 aaPredicted RBP18.22■□□□□ 0.51
USP28-204ENST00000537642 IFFO2Q5TF58 517 aa18.22■□□□□ 0.51
USP28-204ENST00000537642 FKBP1CQ5VVH2 108 aa18.22■□□□□ 0.51
USP28-204ENST00000537642 PI16Q6UXB8 463 aa18.22■□□□□ 0.51
USP28-204ENST00000537642 DBNDD2Q9BQY9 259 aa18.22■□□□□ 0.51
USP28-204ENST00000537642 TMOD2Q9NZR1 351 aa18.22■□□□□ 0.51
USP28-204ENST00000537642 ABCF2Q9UG63 623 aa18.22■□□□□ 0.51
USP28-204ENST00000537642 OTOFQ9HC10 1997 aa18.21■□□□□ 0.51
USP28-204ENST00000537642 MCAMP43121 646 aa18.21■□□□□ 0.51
USP28-204ENST00000537642 PDE3AQ14432 1141 aa18.21■□□□□ 0.51
USP28-204ENST00000537642 CDC42EP5Q6NZY7 148 aa18.21■□□□□ 0.51
USP28-204ENST00000537642 FAM83AQ86UY5 434 aa18.21■□□□□ 0.51
USP28-204ENST00000537642 TNS4Q8IZW8 715 aa18.21■□□□□ 0.51
USP28-204ENST00000537642 SPATA5Q8NB90 893 aa18.21■□□□□ 0.51
USP28-204ENST00000537642 CLMNQ96JQ2 1002 aa18.21■□□□□ 0.51
USP28-204ENST00000537642 UQCRFS1P1P0C7P4 283 aa18.2■□□□□ 0.5
USP28-204ENST00000537642 MKRN3Q13064 507 aaKnown RBP18.2■□□□□ 0.5
USP28-204ENST00000537642 SPTY2D1Q68D10 685 aaPredicted RBP18.2■□□□□ 0.5
USP28-204ENST00000537642 REM2Q8IYK8 340 aaPredicted RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms