RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 RPAP1Q9BWH6 1393 aaPredicted RBP11.29□□□□□ -0.6
CIITA-203ENST00000537380 TCRBV5S4A2TA0A5A2 114 aa11.29□□□□□ -0.6
CIITA-203ENST00000537380 RABEP1Q15276 862 aa11.29□□□□□ -0.6
CIITA-203ENST00000537380 CERS3Q8IU89 383 aa11.29□□□□□ -0.6
CIITA-203ENST00000537380 LARGE2Q8N3Y3 721 aa11.29□□□□□ -0.6
CIITA-203ENST00000537380 TBC1D22AQ8WUA7 517 aa11.29□□□□□ -0.6
CIITA-203ENST00000537380 L3MBTL3Q96JM7 780 aaPredicted RBP11.29□□□□□ -0.6
CIITA-203ENST00000537380 KIF2CQ99661 725 aa11.29□□□□□ -0.6
CIITA-203ENST00000537380 PIH1D3Q9NQM4 214 aaKnown RBP11.29□□□□□ -0.6
CIITA-203ENST00000537380 ZNF541Q9H0D2 1346 aa11.29□□□□□ -0.6
CIITA-203ENST00000537380 MYH13Q9UKX3 1938 aa11.29□□□□□ -0.6
CIITA-203ENST00000537380 POTECB2RU33 542 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 PPIP5K2O43314 1243 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 PDE6AP16499 860 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 FKBP1AP62942 108 aaKnown RBP11.28□□□□□ -0.6
CIITA-203ENST00000537380 NECTIN1Q15223 517 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 AOC3Q16853 763 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 SLC9C2Q5TAH2 1124 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 RNF20Q5VTR2 975 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 PI16Q6UXB8 463 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 TXNRD3Q86VQ6 643 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 JDP2Q8WYK2 163 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 SNX21Q969T3 373 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 IPO9Q96P70 1041 aaKnown RBP11.28□□□□□ -0.6
CIITA-203ENST00000537380 TM6SF1Q9BZW5 370 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 ZC3H12CQ9C0D7 883 aaKnown RBP11.28□□□□□ -0.6
CIITA-203ENST00000537380 IL25Q9H293 177 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 CD209Q9NNX6 404 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 NDUFB9Q9Y6M9 179 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 U3KPZ7 1027 aaPredicted RBP11.28□□□□□ -0.6
CIITA-203ENST00000537380 ZMYM6O95789 1325 aa11.28□□□□□ -0.6
CIITA-203ENST00000537380 COL1A1P02452 1464 aaPredicted RBP11.27□□□□□ -0.6
CIITA-203ENST00000537380 SCN9AQ15858 1988 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 IQCA1LA6NCM1 817 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 WTIPA6NIX2 430 aaPredicted RBP11.27□□□□□ -0.61
CIITA-203ENST00000537380 C6orf229H3BNL8 230 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 FRAT2O75474 233 aaPredicted RBP11.27□□□□□ -0.61
CIITA-203ENST00000537380 IDH1O75874 414 aaKnown RBP11.27□□□□□ -0.61
CIITA-203ENST00000537380 GNAT2P19087 354 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 ALX1Q15699 326 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 PODNQ7Z5L7 613 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 NIM1KQ8IY84 436 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 GPC2Q8N158 579 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 OSBP2Q969R2 916 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 LRP2BPQ9P2M1 347 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 CTNNA3Q9UI47 895 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 ZNF646O15015 1829 aaPredicted RBP11.27□□□□□ -0.61
CIITA-203ENST00000537380 MAST3O60307 1309 aa11.27□□□□□ -0.61
CIITA-203ENST00000537380 ADAMTSL1Q8N6G6 1762 aa11.26□□□□□ -0.61
CIITA-203ENST00000537380 DDNO94850 711 aaPredicted RBP11.26□□□□□ -0.61
CIITA-203ENST00000537380 ZKSCAN1P17029 563 aaPredicted RBP11.26□□□□□ -0.61
CIITA-203ENST00000537380 KLRK1P26718 216 aa11.26□□□□□ -0.61
CIITA-203ENST00000537380 BECN1Q14457 450 aa11.26□□□□□ -0.61
CIITA-203ENST00000537380 KRT32Q14532 448 aa11.26□□□□□ -0.61
CIITA-203ENST00000537380 ERICH6Q7L0X2 663 aa11.26□□□□□ -0.61
CIITA-203ENST00000537380 ZNF589Q86UQ0 364 aaPredicted RBP11.26□□□□□ -0.61
CIITA-203ENST00000537380 FAM163AQ96GL9 167 aaPredicted RBP11.26□□□□□ -0.61
CIITA-203ENST00000537380 MRIQ9BWK5 157 aa11.26□□□□□ -0.61
CIITA-203ENST00000537380 ZNRF3Q9ULT6 936 aa11.26□□□□□ -0.61
CIITA-203ENST00000537380 ZNF532Q9HCE3 1301 aa11.26□□□□□ -0.61
CIITA-203ENST00000537380 CEP350Q5VT06 3117 aa11.25□□□□□ -0.61
CIITA-203ENST00000537380 HSPD1P10809 573 aaKnown RBP11.25□□□□□ -0.61
CIITA-203ENST00000537380 EIF6P56537 245 aaKnown RBP11.25□□□□□ -0.61
CIITA-203ENST00000537380 GSTO1P78417 241 aa11.25□□□□□ -0.61
CIITA-203ENST00000537380 PTH1RQ03431 593 aa11.25□□□□□ -0.61
CIITA-203ENST00000537380 GIMAP6Q6P9H5 292 aa11.25□□□□□ -0.61
CIITA-203ENST00000537380 SLF2Q8IX21 1173 aa11.25□□□□□ -0.61
CIITA-203ENST00000537380 RBM8AQ9Y5S9 174 aaKnown RBP11.25□□□□□ -0.61
CIITA-203ENST00000537380 MAST2Q6P0Q8 1798 aa11.25□□□□□ -0.61
CIITA-203ENST00000537380 MYO5AQ9Y4I1 1855 aaKnown RBP11.25□□□□□ -0.61
CIITA-203ENST00000537380 YDJCA8MPS7 323 aa11.24□□□□□ -0.61
CIITA-203ENST00000537380 GPAA1O43292 621 aa11.24□□□□□ -0.61
CIITA-203ENST00000537380 LDHBP07195 334 aaKnown RBP11.24□□□□□ -0.61
CIITA-203ENST00000537380 LDHCP07864 332 aa11.24□□□□□ -0.61
CIITA-203ENST00000537380 MCM2P49736 904 aa11.24□□□□□ -0.61
CIITA-203ENST00000537380 CXCL9Q07325 125 aa11.24□□□□□ -0.61
CIITA-203ENST00000537380 MAGEB6Q8N7X4 407 aa11.24□□□□□ -0.61
CIITA-203ENST00000537380 NSUN4Q96CB9 384 aaKnown RBP11.24□□□□□ -0.61
CIITA-203ENST00000537380 GPR101Q96P66 508 aaPredicted RBP11.24□□□□□ -0.61
CIITA-203ENST00000537380 STRBPQ96SI9 672 aaKnown RBP11.24□□□□□ -0.61
CIITA-203ENST00000537380 PUS7LQ9H0K6 701 aaKnown RBP11.24□□□□□ -0.61
CIITA-203ENST00000537380 CLEC11AQ9Y240 323 aa11.24□□□□□ -0.61
CIITA-203ENST00000537380 PATL2C9JE40 543 aaKnown RBP11.23□□□□□ -0.61
CIITA-203ENST00000537380 M0R2C6 588 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 PSMA5P28066 241 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 NT5C2P49902 561 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 MMP14P50281 582 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 PPP4CP60510 307 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 STRIP1Q5VSL9 837 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 CREB3L3Q68CJ9 461 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 NAA16Q6N069 864 aaPredicted RBP11.23□□□□□ -0.61
CIITA-203ENST00000537380 AIDAQ96BJ3 306 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 KLRG1Q96E93 195 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 SEC62Q99442 399 aaKnown RBP11.23□□□□□ -0.61
CIITA-203ENST00000537380 ALDH8A1Q9H2A2 487 aaPredicted RBP11.23□□□□□ -0.61
CIITA-203ENST00000537380 RAI14Q9P0K7 980 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 ABCF2Q9UG63 623 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 SNX14Q9Y5W7 946 aa11.23□□□□□ -0.61
CIITA-203ENST00000537380 SLC27A2O14975 620 aa11.22□□□□□ -0.61
CIITA-203ENST00000537380 ST18O60284 1047 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms