RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 TMOD2Q9NZR1 351 aa12.92□□□□□ -0.34
CSDE1-217ENST00000534699 GPR108Q9NPR9 543 aa12.92□□□□□ -0.34
CSDE1-217ENST00000534699 TTF2Q9UNY4 1162 aaKnown RBP12.92□□□□□ -0.34
CSDE1-217ENST00000534699 GNAI2P04899 355 aa12.91□□□□□ -0.34
CSDE1-217ENST00000534699 CRKP46108 304 aa12.91□□□□□ -0.34
CSDE1-217ENST00000534699 GYG1P46976 350 aa12.91□□□□□ -0.34
CSDE1-217ENST00000534699 SPTY2D1Q68D10 685 aaPredicted RBP12.91□□□□□ -0.34
CSDE1-217ENST00000534699 ZCCHC17Q9NP64 241 aaKnown RBP12.91□□□□□ -0.34
CSDE1-217ENST00000534699 ZNF70Q9UC06 446 aaPredicted RBP12.91□□□□□ -0.34
CSDE1-217ENST00000534699 ASTN2O75129 1339 aaPredicted RBP12.91□□□□□ -0.34
CSDE1-217ENST00000534699 ATP2B3Q16720 1220 aa12.91□□□□□ -0.34
CSDE1-217ENST00000534699 DZIP1LQ8IYY4 767 aaKnown RBP12.9□□□□□ -0.34
CSDE1-217ENST00000534699 MXD3Q9BW11 206 aa12.9□□□□□ -0.34
CSDE1-217ENST00000534699 MVPQ14764 893 aaKnown RBP12.9□□□□□ -0.34
CSDE1-217ENST00000534699 ANKRD13AQ8IZ07 590 aa12.9□□□□□ -0.34
CSDE1-217ENST00000534699 TESPA1A2RU30 521 aaPredicted RBP12.89□□□□□ -0.35
CSDE1-217ENST00000534699 FRAT2O75474 233 aaPredicted RBP12.89□□□□□ -0.35
CSDE1-217ENST00000534699 NPM3O75607 178 aaKnown RBP12.89□□□□□ -0.35
CSDE1-217ENST00000534699 OTUD7BQ6GQQ9 843 aa12.89□□□□□ -0.35
CSDE1-217ENST00000534699 PRMT6Q96LA8 375 aaPredicted RBP12.89□□□□□ -0.35
CSDE1-217ENST00000534699 CSRNP1Q96S65 589 aa12.89□□□□□ -0.35
CSDE1-217ENST00000534699 RNF186Q9NXI6 227 aa12.89□□□□□ -0.35
CSDE1-217ENST00000534699 LRRFIP2Q9Y608 721 aaKnown RBP12.89□□□□□ -0.35
CSDE1-217ENST00000534699 UTRNP46939 3433 aa12.89□□□□□ -0.35
CSDE1-217ENST00000534699 TTLL12Q14166 644 aaPredicted RBP12.89□□□□□ -0.35
CSDE1-217ENST00000534699 SPRYD7Q5W111 196 aa12.89□□□□□ -0.35
CSDE1-217ENST00000534699 FAM163AQ96GL9 167 aaPredicted RBP12.89□□□□□ -0.35
CSDE1-217ENST00000534699 DCAF15Q66K64 600 aa12.88□□□□□ -0.35
CSDE1-217ENST00000534699 COL2A1P02458 1487 aaPredicted RBP12.88□□□□□ -0.35
CSDE1-217ENST00000534699 TRIM27P14373 513 aa12.88□□□□□ -0.35
CSDE1-217ENST00000534699 SLC10A4Q96EP9 437 aa12.88□□□□□ -0.35
CSDE1-217ENST00000534699 MAST2Q6P0Q8 1798 aa12.88□□□□□ -0.35
CSDE1-217ENST00000534699 OTOFQ9HC10 1997 aa12.87□□□□□ -0.35
CSDE1-217ENST00000534699 RBM5P52756 815 aaKnown RBP eCLIP12.87□□□□□ -0.35
CSDE1-217ENST00000534699 SSC5DA1L4H1 1573 aa12.87□□□□□ -0.35
CSDE1-217ENST00000534699 UQCRFS1P1P0C7P4 283 aa12.87□□□□□ -0.35
CSDE1-217ENST00000534699 RASA3Q14644 834 aa12.87□□□□□ -0.35
CSDE1-217ENST00000534699 ZNF512BQ96KM6 892 aaPredicted RBP12.87□□□□□ -0.35
CSDE1-217ENST00000534699 MEIS3Q99687 375 aa12.87□□□□□ -0.35
CSDE1-217ENST00000534699 ANGEL1Q9UNK9 670 aaKnown RBP12.87□□□□□ -0.35
CSDE1-217ENST00000534699 UBE2Q2LH0YL09 131 aa12.86□□□□□ -0.35
CSDE1-217ENST00000534699 SNAP23O00161 211 aa12.86□□□□□ -0.35
CSDE1-217ENST00000534699 WNK4Q96J92 1243 aa12.86□□□□□ -0.35
CSDE1-217ENST00000534699 BCAMP50895 628 aa12.86□□□□□ -0.35
CSDE1-217ENST00000534699 POLA2Q14181 598 aa12.86□□□□□ -0.35
CSDE1-217ENST00000534699 USP2O75604 605 aaPredicted RBP12.85□□□□□ -0.35
CSDE1-217ENST00000534699 LDHCP07864 332 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 RGS19P49795 217 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 GSTO1P78417 241 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 ATP8B2P98198 1209 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 HNRNPUQ00839 825 aaKnown RBP eCLIP12.85□□□□□ -0.35
CSDE1-217ENST00000534699 CTU1Q7Z7A3 348 aaKnown RBP12.85□□□□□ -0.35
CSDE1-217ENST00000534699 CERS3Q8IU89 383 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 FAM151AQ8WW52 585 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 TEPSINQ96N21 525 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 GAKO14976 1311 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 SRGAP3O43295 1099 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 ENTPD3O75355 529 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 LDHBP07195 334 aaKnown RBP12.85□□□□□ -0.35
CSDE1-217ENST00000534699 MAP3K9P80192 1104 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 G3BP1Q13283 466 aaKnown RBP eCLIP12.85□□□□□ -0.351e-6■■□□□ 12.6
CSDE1-217ENST00000534699 ARHGEF6Q15052 776 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 SSH3Q8TE77 659 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 ABHD8Q96I13 439 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 NOP58Q9Y2X3 529 aaKnown RBP12.85□□□□□ -0.35
CSDE1-217ENST00000534699 MYH2Q9UKX2 1941 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 DOCK2Q92608 1830 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 GOLGB1Q14789 3259 aaKnown RBP12.85□□□□□ -0.35
CSDE1-217ENST00000534699 GRM1Q13255 1194 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 MIER1Q8N108 512 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 VEZTQ9HBM0 779 aa12.85□□□□□ -0.35
CSDE1-217ENST00000534699 WDHD1O75717 1129 aaPredicted RBP12.84□□□□□ -0.35
CSDE1-217ENST00000534699 CHAF1AQ13111 956 aaPredicted RBP12.84□□□□□ -0.35
CSDE1-217ENST00000534699 HSP90AB4PQ58FF6 505 aa12.84□□□□□ -0.35
CSDE1-217ENST00000534699 IDI2Q9BXS1 227 aa12.84□□□□□ -0.35
CSDE1-217ENST00000534699 TBC1D2Q9BYX2 928 aa12.84□□□□□ -0.35
CSDE1-217ENST00000534699 F8W031 263 aaPredicted RBP12.84□□□□□ -0.35
CSDE1-217ENST00000534699 ARID4AP29374 1257 aaPredicted RBP12.84□□□□□ -0.35
CSDE1-217ENST00000534699 NOL9Q5SY16 702 aaKnown RBP12.84□□□□□ -0.35
CSDE1-217ENST00000534699 APOBEC3HQ6NTF7 200 aaKnown RBP12.84□□□□□ -0.35
CSDE1-217ENST00000534699 ZNF341Q9BYN7 854 aa12.84□□□□□ -0.35
CSDE1-217ENST00000534699 TDRD3Q9H7E2 651 aaKnown RBP12.84□□□□□ -0.35
CSDE1-217ENST00000534699 GTF2A2P52657 109 aa12.83□□□□□ -0.36
CSDE1-217ENST00000534699 CCDC102BQ68D86 513 aa12.83□□□□□ -0.36
CSDE1-217ENST00000534699 ERC1Q8IUD2 1116 aa12.83□□□□□ -0.36
CSDE1-217ENST00000534699 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.83□□□□□ -0.36
CSDE1-217ENST00000534699 ZNF112Q9UJU3 913 aa12.83□□□□□ -0.36
CSDE1-217ENST00000534699 TAOK2Q9UL54 1235 aa12.83□□□□□ -0.36
CSDE1-217ENST00000534699 CSADQ9Y600 493 aa12.83□□□□□ -0.36
CSDE1-217ENST00000534699 NBPF12Q5TAG4 269 aaPredicted RBP12.83□□□□□ -0.36
CSDE1-217ENST00000534699 FTSJ3Q8IY81 847 aaKnown RBP12.83□□□□□ -0.36
CSDE1-217ENST00000534699 KLHDC4Q8TBB5 520 aa12.83□□□□□ -0.36
CSDE1-217ENST00000534699 CLRN2A0PK11 232 aa12.82□□□□□ -0.36
CSDE1-217ENST00000534699 A0A1B0GUL7 405 aa12.82□□□□□ -0.36
CSDE1-217ENST00000534699 FKTNO75072 461 aa12.82□□□□□ -0.36
CSDE1-217ENST00000534699 CAPN2P17655 700 aa12.82□□□□□ -0.36
CSDE1-217ENST00000534699 MAP3K10Q02779 954 aa12.82□□□□□ -0.36
CSDE1-217ENST00000534699 IFNL1Q8IU54 200 aa12.82□□□□□ -0.36
CSDE1-217ENST00000534699 RFX7Q2KHR2 1363 aa12.81□□□□□ -0.36
CSDE1-217ENST00000534699 SPDYE5A6NIY4 337 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms