RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 MANSC4A6NHS7 340 aaPredicted RBP22.26■■□□□ 1.15
PCF11-206ENST00000533018 USP2O75604 605 aaPredicted RBP22.26■■□□□ 1.15
PCF11-206ENST00000533018 CT47B1P0C2W7 299 aaPredicted RBP22.26■■□□□ 1.15
PCF11-206ENST00000533018 ZBTB48P10074 688 aaPredicted RBP22.26■■□□□ 1.15
PCF11-206ENST00000533018 WNK4Q96J92 1243 aa22.26■■□□□ 1.15
PCF11-206ENST00000533018 SIL1Q9H173 461 aa22.26■■□□□ 1.15
PCF11-206ENST00000533018 CCER2I3L3R5 266 aa22.25■■□□□ 1.15
PCF11-206ENST00000533018 GPR25O00155 361 aa22.25■■□□□ 1.15
PCF11-206ENST00000533018 ALDH1A1P00352 501 aa22.25■■□□□ 1.15
PCF11-206ENST00000533018 SLC5A1P13866 664 aa22.25■■□□□ 1.15
PCF11-206ENST00000533018 RGS19P49795 217 aa22.25■■□□□ 1.15
PCF11-206ENST00000533018 INHBEP58166 350 aa22.25■■□□□ 1.15
PCF11-206ENST00000533018 ANKRD13AQ8IZ07 590 aa22.25■■□□□ 1.15
PCF11-206ENST00000533018 TEKT1Q969V4 418 aa22.25■■□□□ 1.15
PCF11-206ENST00000533018 API5Q9BZZ5 524 aaKnown RBP22.25■■□□□ 1.15
PCF11-206ENST00000533018 MYH13Q9UKX3 1938 aa22.25■■□□□ 1.15
PCF11-206ENST00000533018 UNCXA6NJT0 531 aa22.24■■□□□ 1.15
PCF11-206ENST00000533018 RFX5P48382 616 aaPredicted RBP22.24■■□□□ 1.15
PCF11-206ENST00000533018 TMEM39BQ9GZU3 492 aa22.24■■□□□ 1.15
PCF11-206ENST00000533018 FGFR2P21802 821 aa22.23■■□□□ 1.15
PCF11-206ENST00000533018 IFNL1Q8IU54 200 aa22.23■■□□□ 1.15
PCF11-206ENST00000533018 LPIN2Q92539 896 aa22.23■■□□□ 1.15
PCF11-206ENST00000533018 HDAC5Q9UQL6 1122 aa22.23■■□□□ 1.15
PCF11-206ENST00000533018 FKTNO75072 461 aa22.22■■□□□ 1.15
PCF11-206ENST00000533018 CACNB3P54284 484 aa22.22■■□□□ 1.15
PCF11-206ENST00000533018 SOX10P56693 466 aa22.22■■□□□ 1.15
PCF11-206ENST00000533018 HDLBPQ00341 1268 aaKnown RBP22.22■■□□□ 1.15
PCF11-206ENST00000533018 PKN2Q16513 984 aaKnown RBP22.22■■□□□ 1.15
PCF11-206ENST00000533018 R3HDMLQ9H3Y0 253 aa22.22■■□□□ 1.15
PCF11-206ENST00000533018 ELP3Q9H9T3 547 aa22.22■■□□□ 1.15
PCF11-206ENST00000533018 TMOD2Q9NZR1 351 aa22.22■■□□□ 1.15
PCF11-206ENST00000533018 MAST3O60307 1309 aa22.22■■□□□ 1.15
PCF11-206ENST00000533018 KIF16BQ96L93 1317 aa22.22■■□□□ 1.15
PCF11-206ENST00000533018 OTUD7BQ6GQQ9 843 aa22.21■■□□□ 1.15
PCF11-206ENST00000533018 ATG9AQ7Z3C6 839 aa22.21■■□□□ 1.15
PCF11-206ENST00000533018 CDAN1Q8IWY9 1227 aa22.21■■□□□ 1.15
PCF11-206ENST00000533018 TEPSINQ96N21 525 aa22.21■■□□□ 1.15
PCF11-206ENST00000533018 CEP126Q9P2H0 1117 aa22.21■■□□□ 1.15
PCF11-206ENST00000533018 LRRFIP2Q9Y608 721 aaKnown RBP22.21■■□□□ 1.15
PCF11-206ENST00000533018 NOM1Q5C9Z4 860 aaKnown RBP22.2■■□□□ 1.14
PCF11-206ENST00000533018 HPS5Q9UPZ3 1129 aa22.2■■□□□ 1.14
PCF11-206ENST00000533018 OTOFQ9HC10 1997 aa22.19■■□□□ 1.14
PCF11-206ENST00000533018 IGF2BP3O00425 579 aaKnown RBP eCLIP22.19■■□□□ 1.14
PCF11-206ENST00000533018 RARSP54136 660 aaKnown RBP22.19■■□□□ 1.14
PCF11-206ENST00000533018 ATP2B3Q16720 1220 aa22.19■■□□□ 1.14
PCF11-206ENST00000533018 WDR66Q8TBY9 1149 aa22.19■■□□□ 1.14
PCF11-206ENST00000533018 OPTNQ96CV9 577 aa22.19■■□□□ 1.14
PCF11-206ENST00000533018 ZDHHC15Q96MV8 337 aa22.19■■□□□ 1.14
PCF11-206ENST00000533018 CFHR5Q9BXR6 569 aa22.19■■□□□ 1.14
PCF11-206ENST00000533018 SUGT1Q9Y2Z0 365 aa22.19■■□□□ 1.14
PCF11-206ENST00000533018 CIAO1O76071 339 aa22.18■■□□□ 1.14
PCF11-206ENST00000533018 GJA5P36382 358 aa22.18■■□□□ 1.14
PCF11-206ENST00000533018 MRIQ9BWK5 157 aa22.18■■□□□ 1.14
PCF11-206ENST00000533018 GNL3LQ9NVN8 582 aaKnown RBP22.18■■□□□ 1.14
PCF11-206ENST00000533018 FBXO3Q9UK99 471 aa22.18■■□□□ 1.14
PCF11-206ENST00000533018 CSADQ9Y600 493 aa22.18■■□□□ 1.14
PCF11-206ENST00000533018 MAP3K9P80192 1104 aa22.17■■□□□ 1.14
PCF11-206ENST00000533018 MEIS3Q99687 375 aa22.17■■□□□ 1.14
PCF11-206ENST00000533018 PA2G4Q9UQ80 394 aaKnown RBP22.17■■□□□ 1.14
PCF11-206ENST00000533018 AK9Q5TCS8 1911 aa22.17■■□□□ 1.14
PCF11-206ENST00000533018 TNRC18O15417 2968 aaPredicted RBP22.17■■□□□ 1.14
PCF11-206ENST00000533018 IL15P40933 162 aaPredicted RBP22.16■■□□□ 1.14
PCF11-206ENST00000533018 APOBEC3HQ6NTF7 200 aaKnown RBP22.16■■□□□ 1.14
PCF11-206ENST00000533018 HHIPL2Q6UWX4 724 aa22.16■■□□□ 1.14
PCF11-206ENST00000533018 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.16■■□□□ 1.14
PCF11-206ENST00000533018 LAMB1P07942 1786 aa22.15■■□□□ 1.14
PCF11-206ENST00000533018 VGLL4Q14135 290 aa22.15■■□□□ 1.14
PCF11-206ENST00000533018 FBXO46Q6PJ61 603 aaPredicted RBP22.15■■□□□ 1.14
PCF11-206ENST00000533018 CNKSR2Q8WXI2 1034 aa22.15■■□□□ 1.14
PCF11-206ENST00000533018 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.14■■□□□ 1.13
PCF11-206ENST00000533018 ARHGAP45Q92619 1136 aa22.14■■□□□ 1.13
PCF11-206ENST00000533018 FRAT1Q92837 279 aaPredicted RBP22.14■■□□□ 1.13
PCF11-206ENST00000533018 HOOK2Q96ED9 719 aa22.14■■□□□ 1.13
PCF11-206ENST00000533018 OTUD5Q96G74 571 aa22.14■■□□□ 1.13
PCF11-206ENST00000533018 LDHBP07195 334 aaKnown RBP22.13■■□□□ 1.13
PCF11-206ENST00000533018 GNAI3P08754 354 aa22.13■■□□□ 1.13
PCF11-206ENST00000533018 CRHR2Q13324 411 aa22.13■■□□□ 1.13
PCF11-206ENST00000533018 FAM83AQ86UY5 434 aa22.13■■□□□ 1.13
PCF11-206ENST00000533018 PTPN18Q99952 460 aa22.13■■□□□ 1.13
PCF11-206ENST00000533018 TRIM17Q9Y577 477 aa22.13■■□□□ 1.13
PCF11-206ENST00000533018 IPO8O15397 1037 aaKnown RBP22.12■■□□□ 1.13
PCF11-206ENST00000533018 SRGAP3O43295 1099 aa22.12■■□□□ 1.13
PCF11-206ENST00000533018 DIXDC1Q155Q3 683 aa22.12■■□□□ 1.13
PCF11-206ENST00000533018 FKBP1CQ5VVH2 108 aa22.12■■□□□ 1.13
PCF11-206ENST00000533018 INTS3Q68E01 1043 aaKnown RBP22.12■■□□□ 1.13
PCF11-206ENST00000533018 WRNIP1Q96S55 665 aa22.12■■□□□ 1.13
PCF11-206ENST00000533018 COPRSQ9NQ92 184 aa22.12■■□□□ 1.13
PCF11-206ENST00000533018 DENND2AQ9ULE3 1009 aa22.12■■□□□ 1.13
PCF11-206ENST00000533018 CCL15-CCL14A0A0B4J2E2 113 aa22.11■■□□□ 1.13
PCF11-206ENST00000533018 PRDX5P30044 214 aa22.11■■□□□ 1.13
PCF11-206ENST00000533018 PHKA1P46020 1223 aa22.11■■□□□ 1.13
PCF11-206ENST00000533018 GTF2A2P52657 109 aa22.11■■□□□ 1.13
PCF11-206ENST00000533018 CCL15Q16663 113 aa22.11■■□□□ 1.13
PCF11-206ENST00000533018 DCAF15Q66K64 600 aa22.11■■□□□ 1.13
PCF11-206ENST00000533018 ZKSCAN4Q969J2 545 aaPredicted RBP22.11■■□□□ 1.13
PCF11-206ENST00000533018 TESPA1A2RU30 521 aaPredicted RBP22.1■■□□□ 1.13
PCF11-206ENST00000533018 TIMM10P62072 90 aa22.1■■□□□ 1.13
PCF11-206ENST00000533018 TCP10Q12799 353 aa22.1■■□□□ 1.13
PCF11-206ENST00000533018 PDE4DIPQ5VU43 2346 aa22.1■■□□□ 1.13
PCF11-206ENST00000533018 MIGA2Q7L4E1 593 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms