RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 TMEM57Q8N5G2 664 aa16.54■□□□□ 0.24
VPS28-211ENST00000530790 SSC5DA1L4H1 1573 aa16.53■□□□□ 0.24
VPS28-211ENST00000530790 PRKG1Q13976 671 aa16.53■□□□□ 0.24
VPS28-211ENST00000530790 SPDYE2Q495Y8 402 aa16.53■□□□□ 0.24
VPS28-211ENST00000530790 DZIP1LQ8IYY4 767 aaKnown RBP16.53■□□□□ 0.24
VPS28-211ENST00000530790 TEKT1Q969V4 418 aa16.53■□□□□ 0.24
VPS28-211ENST00000530790 GNL3LQ9NVN8 582 aaKnown RBP16.53■□□□□ 0.24
VPS28-211ENST00000530790 SUGT1Q9Y2Z0 365 aa16.53■□□□□ 0.24
VPS28-211ENST00000530790 HDLBPQ00341 1268 aaKnown RBP16.52■□□□□ 0.24
VPS28-211ENST00000530790 GRIK5Q16478 980 aa16.52■□□□□ 0.24
VPS28-211ENST00000530790 REM2Q8IYK8 340 aaPredicted RBP16.52■□□□□ 0.24
VPS28-211ENST00000530790 WDR66Q8TBY9 1149 aa16.52■□□□□ 0.24
VPS28-211ENST00000530790 TDRD3Q9H7E2 651 aaKnown RBP16.52■□□□□ 0.24
VPS28-211ENST00000530790 ZNF70Q9UC06 446 aaPredicted RBP16.52■□□□□ 0.24
VPS28-211ENST00000530790 ANGEL1Q9UNK9 670 aaKnown RBP16.52■□□□□ 0.24
VPS28-211ENST00000530790 MYH13Q9UKX3 1938 aa16.52■□□□□ 0.23
VPS28-211ENST00000530790 PPP1R12BO60237 982 aaPredicted RBP16.51■□□□□ 0.23
VPS28-211ENST00000530790 RASA3Q14644 834 aa16.51■□□□□ 0.23
VPS28-211ENST00000530790 SUPT20HL1Q3ZLR7 823 aa16.51■□□□□ 0.23
VPS28-211ENST00000530790 SAGE1Q9NXZ1 904 aa16.51■□□□□ 0.23
VPS28-211ENST00000530790 CAPN15O75808 1086 aa16.5■□□□□ 0.23
VPS28-211ENST00000530790 TNNI2P48788 182 aa16.5■□□□□ 0.23
VPS28-211ENST00000530790 ITPRIPQ8IWB1 547 aa16.5■□□□□ 0.23
VPS28-211ENST00000530790 AKAP2Q9Y2D5 859 aa16.5■□□□□ 0.23
VPS28-211ENST00000530790 SEMA3EO15041 775 aa16.49■□□□□ 0.23
VPS28-211ENST00000530790 PHKA1P46020 1223 aa16.49■□□□□ 0.23
VPS28-211ENST00000530790 ZDHHC15Q96MV8 337 aa16.49■□□□□ 0.23
VPS28-211ENST00000530790 TMOD2Q9NZR1 351 aa16.49■□□□□ 0.23
VPS28-211ENST00000530790 DENND2AQ9ULE3 1009 aa16.49■□□□□ 0.23
VPS28-211ENST00000530790 FZD1Q9UP38 647 aa16.49■□□□□ 0.23
VPS28-211ENST00000530790 A0A1B0GUL7 405 aa16.48■□□□□ 0.23
VPS28-211ENST00000530790 TCP10L2B9ZVM9 353 aa16.48■□□□□ 0.23
VPS28-211ENST00000530790 ADORA1P30542 326 aa16.48■□□□□ 0.23
VPS28-211ENST00000530790 IREB2P48200 963 aaKnown RBP16.48■□□□□ 0.23
VPS28-211ENST00000530790 TFCP2Q12800 502 aa16.48■□□□□ 0.23
VPS28-211ENST00000530790 MAP3K11Q16584 847 aa16.48■□□□□ 0.23
VPS28-211ENST00000530790 LDLRAD1Q5T700 205 aa16.48■□□□□ 0.23
VPS28-211ENST00000530790 NBPF12Q5TAG4 269 aaPredicted RBP16.48■□□□□ 0.23
VPS28-211ENST00000530790 CSRNP1Q96S65 589 aa16.48■□□□□ 0.23
VPS28-211ENST00000530790 PNMA6EA0A0J9YXQ4 647 aa16.47■□□□□ 0.23
VPS28-211ENST00000530790 MKRN3Q13064 507 aaKnown RBP16.47■□□□□ 0.23
VPS28-211ENST00000530790 MVPQ14764 893 aaKnown RBP16.47■□□□□ 0.23
VPS28-211ENST00000530790 CCDC102BQ68D86 513 aa16.47■□□□□ 0.23
VPS28-211ENST00000530790 HHIPL2Q6UWX4 724 aa16.47■□□□□ 0.23
VPS28-211ENST00000530790 MRIQ9BWK5 157 aa16.47■□□□□ 0.23
VPS28-211ENST00000530790 RNF186Q9NXI6 227 aa16.47■□□□□ 0.23
VPS28-211ENST00000530790 SALL1Q9NSC2 1324 aa16.46■□□□□ 0.23
VPS28-211ENST00000530790 TRPA1O75762 1119 aa16.46■□□□□ 0.23
VPS28-211ENST00000530790 LDHBP07195 334 aaKnown RBP16.46■□□□□ 0.23
VPS28-211ENST00000530790 RLBP1P12271 317 aa16.46■□□□□ 0.23
VPS28-211ENST00000530790 PRDX5P30044 214 aa16.46■□□□□ 0.23
VPS28-211ENST00000530790 CACNB3P54284 484 aa16.46■□□□□ 0.23
VPS28-211ENST00000530790 SREBF2Q12772 1141 aa16.46■□□□□ 0.23
VPS28-211ENST00000530790 G3BP1Q13283 466 aaKnown RBP eCLIP16.46■□□□□ 0.23
VPS28-211ENST00000530790 ZGPATQ8N5A5 531 aaKnown RBP16.46■□□□□ 0.23
VPS28-211ENST00000530790 TMEM39BQ9GZU3 492 aa16.46■□□□□ 0.23
VPS28-211ENST00000530790 PDS5AQ29RF7 1337 aaKnown RBP16.45■□□□□ 0.22
VPS28-211ENST00000530790 UNCXA6NJT0 531 aa16.45■□□□□ 0.22
VPS28-211ENST00000530790 ZBTB22O15209 634 aa16.45■□□□□ 0.22
VPS28-211ENST00000530790 TIMM10P62072 90 aa16.45■□□□□ 0.22
VPS28-211ENST00000530790 RASGRF1Q13972 1273 aa16.45■□□□□ 0.22
VPS28-211ENST00000530790 SPRYD7Q5W111 196 aa16.45■□□□□ 0.22
VPS28-211ENST00000530790 APOBEC3HQ6NTF7 200 aaKnown RBP16.45■□□□□ 0.22
VPS28-211ENST00000530790 SLC10A4Q96EP9 437 aa16.45■□□□□ 0.22
VPS28-211ENST00000530790 XAGE2Q96GT9 111 aa16.45■□□□□ 0.22
VPS28-211ENST00000530790 C1orf115Q9H7X2 142 aa16.45■□□□□ 0.22
VPS28-211ENST00000530790 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.45■□□□□ 0.22
VPS28-211ENST00000530790 RPAP1Q9BWH6 1393 aaPredicted RBP16.44■□□□□ 0.22
VPS28-211ENST00000530790 OS9Q13438 667 aaPredicted RBP16.44■□□□□ 0.22
VPS28-211ENST00000530790 DIXDC1Q155Q3 683 aa16.44■□□□□ 0.22
VPS28-211ENST00000530790 GORABQ5T7V8 394 aa16.44■□□□□ 0.22
VPS28-211ENST00000530790 CDAN1Q8IWY9 1227 aa16.44■□□□□ 0.22
VPS28-211ENST00000530790 ANKRD13AQ8IZ07 590 aa16.44■□□□□ 0.22
VPS28-211ENST00000530790 CLMNQ96JQ2 1002 aa16.44■□□□□ 0.22
VPS28-211ENST00000530790 TEPSINQ96N21 525 aa16.44■□□□□ 0.22
VPS28-211ENST00000530790 NEUROD6Q96NK8 337 aa16.44■□□□□ 0.22
VPS28-211ENST00000530790 DAGLAQ9Y4D2 1042 aa16.44■□□□□ 0.22
VPS28-211ENST00000530790 AKAP11Q9UKA4 1901 aa16.44■□□□□ 0.22
VPS28-211ENST00000530790 USP2O75604 605 aaPredicted RBP16.43■□□□□ 0.22
VPS28-211ENST00000530790 ZBTB48P10074 688 aaPredicted RBP16.43■□□□□ 0.22
VPS28-211ENST00000530790 POLA2Q14181 598 aa16.43■□□□□ 0.22
VPS28-211ENST00000530790 FKBP1CQ5VVH2 108 aa16.43■□□□□ 0.22
VPS28-211ENST00000530790 FAM83AQ86UY5 434 aa16.43■□□□□ 0.22
VPS28-211ENST00000530790 DZIP1Q86YF9 867 aaKnown RBP16.43■□□□□ 0.22
VPS28-211ENST00000530790 WNK4Q96J92 1243 aa16.43■□□□□ 0.22
VPS28-211ENST00000530790 OTOFQ9HC10 1997 aa16.43■□□□□ 0.22
VPS28-211ENST00000530790 ZBTB7BO15156 539 aaPredicted RBP16.42■□□□□ 0.22
VPS28-211ENST00000530790 MS4A1P11836 297 aa16.42■□□□□ 0.22
VPS28-211ENST00000530790 TM4SF4P48230 202 aa16.42■□□□□ 0.22
VPS28-211ENST00000530790 SSH3Q8TE77 659 aa16.42■□□□□ 0.22
VPS28-211ENST00000530790 HOOK2Q96ED9 719 aa16.42■□□□□ 0.22
VPS28-211ENST00000530790 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.42■□□□□ 0.22
VPS28-211ENST00000530790 MANSC4A6NHS7 340 aaPredicted RBP16.41■□□□□ 0.22
VPS28-211ENST00000530790 ATP8B2P98198 1209 aa16.41■□□□□ 0.22
VPS28-211ENST00000530790 SPTY2D1Q68D10 685 aaPredicted RBP16.41■□□□□ 0.22
VPS28-211ENST00000530790 PANK1Q8TE04 598 aa16.41■□□□□ 0.22
VPS28-211ENST00000530790 ABHD8Q96I13 439 aa16.41■□□□□ 0.22
VPS28-211ENST00000530790 ABCF2Q9UG63 623 aa16.41■□□□□ 0.22
VPS28-211ENST00000530790 SURF6O75683 361 aaKnown RBP16.4■□□□□ 0.22
VPS28-211ENST00000530790 CDC42EP5Q6NZY7 148 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms