RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 VPS37DQ86XT2 251 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 FAM9BQ8IZU0 186 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 FAM43AQ8N2R8 423 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 KLHDC4Q8TBB5 520 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 MS4A4AQ96JQ5 239 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 TMEM106CQ9BVX2 250 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 CFHR5Q9BXR6 569 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 PPP2R3BQ9Y5P8 575 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 PTCH2Q9Y6C5 1203 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 IL16Q14005 1332 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 SSC5DA1L4H1 1573 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 NBPF7P0C2Y1 421 aaPredicted RBP8.31□□□□□ -1.08
CD44-221ENST00000526000 VGLL4Q14135 290 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 UBE4AQ14139 1066 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 INTS3Q68E01 1043 aaKnown RBP8.31□□□□□ -1.08
CD44-221ENST00000526000 WDR63Q8IWG1 891 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 SH3TC2Q8TF17 1288 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 ZKSCAN4Q969J2 545 aaPredicted RBP8.31□□□□□ -1.08
CD44-221ENST00000526000 KAZALD1Q96I82 304 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 TEPSINQ96N21 525 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 ARHGAP39Q9C0H5 1083 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 SRCIN1Q9C0H9 1055 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 ZFYVE28Q9HCC9 887 aa8.31□□□□□ -1.08
CD44-221ENST00000526000 FAM205AQ6ZU69 1335 aa8.3□□□□□ -1.08
CD44-221ENST00000526000 TESPA1A2RU30 521 aaPredicted RBP8.3□□□□□ -1.08
CD44-221ENST00000526000 TNNI2P48788 182 aa8.3□□□□□ -1.08
CD44-221ENST00000526000 FKBP1AP62942 108 aaKnown RBP8.3□□□□□ -1.08
CD44-221ENST00000526000 TNFAIP1Q13829 316 aa8.3□□□□□ -1.08
CD44-221ENST00000526000 METTL24Q5JXM2 366 aa8.3□□□□□ -1.08
CD44-221ENST00000526000 FBXO33Q7Z6M2 555 aa8.3□□□□□ -1.08
CD44-221ENST00000526000 BICC1Q9H694 974 aaKnown RBP8.3□□□□□ -1.08
CD44-221ENST00000526000 SERPINA10Q9UK55 444 aa8.3□□□□□ -1.08
CD44-221ENST00000526000 RIPOR2Q9Y4F9 1068 aa8.3□□□□□ -1.08
CD44-221ENST00000526000 CSADQ9Y600 493 aa8.3□□□□□ -1.08
CD44-221ENST00000526000 SPEF2Q9C093 1822 aa8.3□□□□□ -1.08
CD44-221ENST00000526000 KIAA0100Q14667 2235 aaKnown RBP8.29□□□□□ -1.08
CD44-221ENST00000526000 BTBD19C9JJ37 291 aa8.29□□□□□ -1.08
CD44-221ENST00000526000 ALDH1L1O75891 902 aa8.29□□□□□ -1.08
CD44-221ENST00000526000 GTF2A2P52657 109 aa8.29□□□□□ -1.08
CD44-221ENST00000526000 TCP10Q12799 353 aa8.29□□□□□ -1.08
CD44-221ENST00000526000 SLC9C1Q4G0N8 1177 aa8.29□□□□□ -1.08
CD44-221ENST00000526000 ARMC5Q96C12 935 aa8.29□□□□□ -1.08
CD44-221ENST00000526000 WRNIP1Q96S55 665 aa8.29□□□□□ -1.08
CD44-221ENST00000526000 CPA4Q9UI42 421 aa8.29□□□□□ -1.08
CD44-221ENST00000526000 IRF6O14896 467 aa8.28□□□□□ -1.08
CD44-221ENST00000526000 ANP32CO43423 234 aa8.28□□□□□ -1.08
CD44-221ENST00000526000 INPP5BP32019 993 aa8.28□□□□□ -1.08
CD44-221ENST00000526000 CAVIN4Q5BKX8 364 aa8.28□□□□□ -1.08
CD44-221ENST00000526000 APOBEC3HQ6NTF7 200 aaKnown RBP8.28□□□□□ -1.08
CD44-221ENST00000526000 NBPF11Q86T75 865 aa8.28□□□□□ -1.08
CD44-221ENST00000526000 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.28□□□□□ -1.08
CD44-221ENST00000526000 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.28□□□□□ -1.08
CD44-221ENST00000526000 TEKT1Q969V4 418 aa8.28□□□□□ -1.08
CD44-221ENST00000526000 GCC1Q96CN9 775 aa8.28□□□□□ -1.08
CD44-221ENST00000526000 COLQQ9Y215 455 aaPredicted RBP8.28□□□□□ -1.08
CD44-221ENST00000526000 SNCAIPQ9Y6H5 919 aa8.28□□□□□ -1.08
CD44-221ENST00000526000 UNCXA6NJT0 531 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 H0YGN5 161 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 SLURP2P0DP57 97 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 CETPP11597 493 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 KIF22Q14807 665 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 ARHGEF6Q15052 776 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 MTFR1Q15390 333 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 ERO1BQ86YB8 467 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 ZFPM1Q8IX07 1006 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 MRPL50Q8N5N7 158 aaKnown RBP8.27□□□□□ -1.09
CD44-221ENST00000526000 ANKRD44Q8N8A2 993 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 DPF3Q92784 378 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 ZNF333Q96JL9 665 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 TMOD2Q9NZR1 351 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 BIN2Q9UBW5 565 aaPredicted RBP8.27□□□□□ -1.09
CD44-221ENST00000526000 TNRC18O15417 2968 aaPredicted RBP8.27□□□□□ -1.09
CD44-221ENST00000526000 MROH5Q6ZUA9 1318 aa8.27□□□□□ -1.09
CD44-221ENST00000526000 PSME4Q14997 1843 aa8.26□□□□□ -1.09
CD44-221ENST00000526000 SPDYE5A6NIY4 337 aa8.26□□□□□ -1.09
CD44-221ENST00000526000 TLR2O60603 784 aa8.26□□□□□ -1.09
CD44-221ENST00000526000 WDHD1O75717 1129 aaPredicted RBP8.26□□□□□ -1.09
CD44-221ENST00000526000 PDE8BO95263 885 aa8.26□□□□□ -1.09
CD44-221ENST00000526000 FMNL1O95466 1100 aaPredicted RBP8.26□□□□□ -1.09
CD44-221ENST00000526000 IFIT1P09914 478 aaKnown RBP8.26□□□□□ -1.09
CD44-221ENST00000526000 CTGFP29279 349 aa8.26□□□□□ -1.09
CD44-221ENST00000526000 PSMC4P43686 418 aa8.26□□□□□ -1.09
CD44-221ENST00000526000 SNAPC2Q13487 334 aa8.26□□□□□ -1.09
CD44-221ENST00000526000 DIXDC1Q155Q3 683 aa8.26□□□□□ -1.09
CD44-221ENST00000526000 SIL1Q9H173 461 aa8.26□□□□□ -1.09
CD44-221ENST00000526000 COL1A1P02452 1464 aaPredicted RBP8.26□□□□□ -1.09
CD44-221ENST00000526000 PDHXO00330 501 aa8.25□□□□□ -1.09
CD44-221ENST00000526000 FXR1P51114 621 aaKnown RBP eCLIP8.25□□□□□ -1.09
CD44-221ENST00000526000 LACTBP83111 547 aaPredicted RBP8.25□□□□□ -1.09
CD44-221ENST00000526000 NFIAQ12857 509 aa8.25□□□□□ -1.09
CD44-221ENST00000526000 CDC42EP5Q6NZY7 148 aa8.25□□□□□ -1.09
CD44-221ENST00000526000 TBC1D22AQ8WUA7 517 aa8.25□□□□□ -1.09
CD44-221ENST00000526000 ZDHHC15Q96MV8 337 aa8.25□□□□□ -1.09
CD44-221ENST00000526000 ZNF341Q9BYN7 854 aa8.25□□□□□ -1.09
CD44-221ENST00000526000 USP44Q9H0E7 712 aa8.25□□□□□ -1.09
CD44-221ENST00000526000 USP40Q9NVE5 1235 aa8.25□□□□□ -1.09
CD44-221ENST00000526000 CYP2C8P10632 490 aa8.24□□□□□ -1.09
CD44-221ENST00000526000 OSBPP22059 807 aa8.24□□□□□ -1.09
CD44-221ENST00000526000 HDLBPQ00341 1268 aaKnown RBP8.24□□□□□ -1.09
CD44-221ENST00000526000 PPIL2Q13356 520 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms