RNA–Protein interactions for RNA: ENST00000523328.5

PVT1-218, Transcript of Pvt1 oncogene, humanhuman

TSL 1 (best)

Gene PVT1, Length 343 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-218ENST00000523328 PPP1R3FQ6ZSY5 799 aaPredicted RBP28.81■■■□□ 2.2
PVT1-218ENST00000523328 DZIP1LQ8IYY4 767 aaKnown RBP28.81■■■□□ 2.2
PVT1-218ENST00000523328 SALL2Q9Y467 1007 aaPredicted RBP28.81■■■□□ 2.2
PVT1-218ENST00000523328 PUS3Q9BZE2 481 aaKnown RBP28.8■■■□□ 2.2
PVT1-218ENST00000523328 SPINK5Q9NQ38 1064 aaPredicted RBP28.8■■■□□ 2.2
PVT1-218ENST00000523328 CNKSR2Q8WXI2 1034 aa28.79■■■□□ 2.2
PVT1-218ENST00000523328 C9orf78Q9NZ63 289 aaPredicted RBP28.79■■■□□ 2.2
PVT1-218ENST00000523328 ALDH1L1O75891 902 aa28.78■■■□□ 2.2
PVT1-218ENST00000523328 BRI3BPQ8WY22 251 aa28.78■■■□□ 2.2
PVT1-218ENST00000523328 KAZALD1Q96I82 304 aa28.78■■■□□ 2.2
PVT1-218ENST00000523328 TMEM39BQ9GZU3 492 aa28.78■■■□□ 2.2
PVT1-218ENST00000523328 TCP10L2B9ZVM9 353 aa28.77■■■□□ 2.2
PVT1-218ENST00000523328 CRKP46108 304 aa28.77■■■□□ 2.2
PVT1-218ENST00000523328 EN2P19622 333 aaPredicted RBP28.76■■■□□ 2.19
PVT1-218ENST00000523328 VGLL4Q14135 290 aa28.76■■■□□ 2.19
PVT1-218ENST00000523328 GRIK5Q16478 980 aa28.76■■■□□ 2.19
PVT1-218ENST00000523328 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.76■■■□□ 2.19
PVT1-218ENST00000523328 SUCLG2Q96I99 432 aa28.76■■■□□ 2.19
PVT1-218ENST00000523328 RIPOR2Q9Y4F9 1068 aa28.76■■■□□ 2.19
PVT1-218ENST00000523328 MAP3K9P80192 1104 aa28.75■■■□□ 2.19
PVT1-218ENST00000523328 HABP4Q5JVS0 413 aaKnown RBP28.75■■■□□ 2.19
PVT1-218ENST00000523328 MRS2Q9HD23 443 aa28.75■■■□□ 2.19
PVT1-218ENST00000523328 CCL15-CCL14A0A0B4J2E2 113 aa28.74■■■□□ 2.19
PVT1-218ENST00000523328 GTF2A2P52657 109 aa28.74■■■□□ 2.19
PVT1-218ENST00000523328 CCL15Q16663 113 aa28.74■■■□□ 2.19
PVT1-218ENST00000523328 SRCIN1Q9C0H9 1055 aa28.74■■■□□ 2.19
PVT1-218ENST00000523328 TNNI2P48788 182 aa28.73■■■□□ 2.19
PVT1-218ENST00000523328 TAF1CQ15572 869 aaPredicted RBP28.73■■■□□ 2.19
PVT1-218ENST00000523328 SLC4A10Q6U841 1118 aa28.73■■■□□ 2.19
PVT1-218ENST00000523328 FBXO33Q7Z6M2 555 aa28.73■■■□□ 2.19
PVT1-218ENST00000523328 FAM43AQ8N2R8 423 aa28.73■■■□□ 2.19
PVT1-218ENST00000523328 ZNF333Q96JL9 665 aa28.73■■■□□ 2.19
PVT1-218ENST00000523328 MROH5Q6ZUA9 1318 aa28.72■■■□□ 2.19
PVT1-218ENST00000523328 ZFYVE28Q9HCC9 887 aa28.72■■■□□ 2.19
PVT1-218ENST00000523328 IQSEC3Q9UPP2 1182 aaPredicted RBP28.72■■■□□ 2.19
PVT1-218ENST00000523328 NBPF7P0C2Y1 421 aaPredicted RBP28.71■■■□□ 2.19
PVT1-218ENST00000523328 HDLBPQ00341 1268 aaKnown RBP28.71■■■□□ 2.19
PVT1-218ENST00000523328 OTUD5Q96G74 571 aa28.71■■■□□ 2.19
PVT1-218ENST00000523328 CSADQ9Y600 493 aa28.71■■■□□ 2.19
PVT1-218ENST00000523328 ZSWIM8A7E2V4 1837 aa28.71■■■□□ 2.19
PVT1-218ENST00000523328 UTYO14607 1347 aa28.7■■■□□ 2.19
PVT1-218ENST00000523328 PTCH2Q9Y6C5 1203 aa28.7■■■□□ 2.18
PVT1-218ENST00000523328 SPDYE5A6NIY4 337 aa28.69■■■□□ 2.18
PVT1-218ENST00000523328 CACNB3P54284 484 aa28.68■■■□□ 2.18
PVT1-218ENST00000523328 CHAF1AQ13111 956 aaPredicted RBP28.68■■■□□ 2.18
PVT1-218ENST00000523328 ARHGEF6Q15052 776 aa28.68■■■□□ 2.18
PVT1-218ENST00000523328 RABL6Q3YEC7 729 aaPredicted RBP28.68■■■□□ 2.18
PVT1-218ENST00000523328 LRRC24Q50LG9 513 aa28.68■■■□□ 2.18
PVT1-218ENST00000523328 VPS37DQ86XT2 251 aa28.68■■■□□ 2.18
PVT1-218ENST00000523328 TBC1D22AQ8WUA7 517 aa28.68■■■□□ 2.18
PVT1-218ENST00000523328 TMEM106CQ9BVX2 250 aa28.68■■■□□ 2.18
PVT1-218ENST00000523328 BICC1Q9H694 974 aaKnown RBP28.68■■■□□ 2.18
PVT1-218ENST00000523328 SNCAIPQ9Y6H5 919 aa28.68■■■□□ 2.18
PVT1-218ENST00000523328 SLC9C1Q4G0N8 1177 aa28.67■■■□□ 2.18
PVT1-218ENST00000523328 VGLL2Q8N8G2 317 aa28.67■■■□□ 2.18
PVT1-218ENST00000523328 TEKT1Q969V4 418 aa28.66■■■□□ 2.18
PVT1-218ENST00000523328 CAVIN4Q5BKX8 364 aa28.65■■■□□ 2.18
PVT1-218ENST00000523328 NBPF11Q86T75 865 aa28.65■■■□□ 2.18
PVT1-218ENST00000523328 ERO1BQ86YB8 467 aa28.65■■■□□ 2.18
PVT1-218ENST00000523328 ANKRD44Q8N8A2 993 aa28.65■■■□□ 2.18
PVT1-218ENST00000523328 ZDHHC15Q96MV8 337 aa28.65■■■□□ 2.18
PVT1-218ENST00000523328 TLR2O60603 784 aa28.64■■■□□ 2.18
PVT1-218ENST00000523328 METTL24Q5JXM2 366 aa28.64■■■□□ 2.18
PVT1-218ENST00000523328 FAM83AQ86UY5 434 aa28.64■■■□□ 2.18
PVT1-218ENST00000523328 WRNIP1Q96S55 665 aa28.64■■■□□ 2.18
PVT1-218ENST00000523328 MRIQ9BWK5 157 aa28.64■■■□□ 2.18
PVT1-218ENST00000523328 ZCCHC17Q9NP64 241 aaKnown RBP28.64■■■□□ 2.18
PVT1-218ENST00000523328 FRAT2O75474 233 aaPredicted RBP28.63■■■□□ 2.17
PVT1-218ENST00000523328 PDE8BO95263 885 aa28.63■■■□□ 2.17
PVT1-218ENST00000523328 CETPP11597 493 aa28.63■■■□□ 2.17
PVT1-218ENST00000523328 APOBEC3HQ6NTF7 200 aaKnown RBP28.63■■■□□ 2.17
PVT1-218ENST00000523328 ZKSCAN4Q969J2 545 aaPredicted RBP28.63■■■□□ 2.17
PVT1-218ENST00000523328 ARHGAP39Q9C0H5 1083 aa28.63■■■□□ 2.17
PVT1-218ENST00000523328 BTBD19C9JJ37 291 aa28.62■■■□□ 2.17
PVT1-218ENST00000523328 IRF6O14896 467 aa28.62■■■□□ 2.17
PVT1-218ENST00000523328 BCAMP50895 628 aa28.62■■■□□ 2.17
PVT1-218ENST00000523328 FKBP1CQ5VVH2 108 aa28.62■■■□□ 2.17
PVT1-218ENST00000523328 MYH13Q9UKX3 1938 aa28.62■■■□□ 2.17
PVT1-218ENST00000523328 LACTBP83111 547 aaPredicted RBP28.61■■■□□ 2.17
PVT1-218ENST00000523328 TMOD2Q9NZR1 351 aa28.61■■■□□ 2.17
PVT1-218ENST00000523328 RPAP1Q9BWH6 1393 aaPredicted RBP28.61■■■□□ 2.17
PVT1-218ENST00000523328 SNAPC2Q13487 334 aa28.6■■■□□ 2.17
PVT1-218ENST00000523328 SLC4A8Q2Y0W8 1093 aa28.6■■■□□ 2.17
PVT1-218ENST00000523328 KLHDC4Q8TBB5 520 aa28.6■■■□□ 2.17
PVT1-218ENST00000523328 SUGT1Q9Y2Z0 365 aa28.6■■■□□ 2.17
PVT1-218ENST00000523328 CEP290O15078 2479 aa28.59■■■□□ 2.17
PVT1-218ENST00000523328 WDHD1O75717 1129 aaPredicted RBP28.59■■■□□ 2.17
PVT1-218ENST00000523328 PPIL2Q13356 520 aa28.59■■■□□ 2.17
PVT1-218ENST00000523328 HOOK2Q96ED9 719 aa28.59■■■□□ 2.17
PVT1-218ENST00000523328 MAST3O60307 1309 aa28.59■■■□□ 2.17
PVT1-218ENST00000523328 FGFR2P21802 821 aa28.58■■■□□ 2.17
PVT1-218ENST00000523328 FXR1P51114 621 aaKnown RBP eCLIP28.58■■■□□ 2.17
PVT1-218ENST00000523328 HHIPL2Q6UWX4 724 aa28.58■■■□□ 2.17
PVT1-218ENST00000523328 SH3TC2Q8TF17 1288 aa28.58■■■□□ 2.17
PVT1-218ENST00000523328 KIF16BQ96L93 1317 aa28.58■■■□□ 2.17
PVT1-218ENST00000523328 MYCP01106 439 aaPredicted RBP28.57■■■□□ 2.16
PVT1-218ENST00000523328 KIF22Q14807 665 aa28.57■■■□□ 2.16
PVT1-218ENST00000523328 GNRH1P01148 92 aa28.56■■■□□ 2.16
PVT1-218ENST00000523328 DCAF15Q66K64 600 aa28.56■■■□□ 2.16
PVT1-218ENST00000523328 ANP32CO43423 234 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms