RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 HAUS7Q99871 368 aa18.65■□□□□ 0.58
LSM1-203ENST00000520755 ADARB2Q9NS39 739 aaKnown RBP18.65■□□□□ 0.58
LSM1-203ENST00000520755 HDAC9Q9UKV0 1011 aa18.65■□□□□ 0.58
LSM1-203ENST00000520755 ERC2O15083 957 aa18.64■□□□□ 0.57
LSM1-203ENST00000520755 ZAP70P43403 619 aa18.64■□□□□ 0.57
LSM1-203ENST00000520755 TBC1D10BQ4KMP7 808 aaPredicted RBP18.64■□□□□ 0.57
LSM1-203ENST00000520755 EAPPQ56P03 285 aaPredicted RBP18.64■□□□□ 0.57
LSM1-203ENST00000520755 ABCF2Q9UG63 623 aa18.64■□□□□ 0.57
LSM1-203ENST00000520755 TTF2Q9UNY4 1162 aaKnown RBP18.64■□□□□ 0.57
LSM1-203ENST00000520755 SALL1Q9NSC2 1324 aa18.64■□□□□ 0.57
LSM1-203ENST00000520755 CDK5RAP2Q96SN8 1893 aa18.64■□□□□ 0.57
LSM1-203ENST00000520755 KIF3CO14782 793 aa18.63■□□□□ 0.57
LSM1-203ENST00000520755 MAP4K4O95819 1239 aaPredicted RBP18.63■□□□□ 0.57
LSM1-203ENST00000520755 ZNF280AP59817 542 aaPredicted RBP18.63■□□□□ 0.57
LSM1-203ENST00000520755 TBC1D9Q6ZT07 1266 aa18.63■□□□□ 0.57
LSM1-203ENST00000520755 ZGPATQ8N5A5 531 aaKnown RBP18.63■□□□□ 0.57
LSM1-203ENST00000520755 TRPM4Q8TD43 1214 aa18.63■□□□□ 0.57
LSM1-203ENST00000520755 ANTXR1Q9H6X2 564 aa18.63■□□□□ 0.57
LSM1-203ENST00000520755 EGFRP00533 1210 aa18.62■□□□□ 0.57
LSM1-203ENST00000520755 LDHBP07195 334 aaKnown RBP18.62■□□□□ 0.57
LSM1-203ENST00000520755 PRDX5P30044 214 aa18.62■□□□□ 0.57
LSM1-203ENST00000520755 KIF4BQ2VIQ3 1234 aa18.62■□□□□ 0.57
LSM1-203ENST00000520755 DNAJC2Q99543 621 aaKnown RBP18.62■□□□□ 0.57
LSM1-203ENST00000520755 MYOZ2Q9NPC6 264 aa18.62■□□□□ 0.57
LSM1-203ENST00000520755 ECM29Q5VYK3 1845 aa18.62■□□□□ 0.57
LSM1-203ENST00000520755 CYP2E1P05181 493 aaPredicted RBP18.61■□□□□ 0.57
LSM1-203ENST00000520755 USP50Q70EL3 339 aaPredicted RBP18.61■□□□□ 0.57
LSM1-203ENST00000520755 PNMA8AQ86V59 439 aaPredicted RBP18.61■□□□□ 0.57
LSM1-203ENST00000520755 SUGT1Q9Y2Z0 365 aa18.61■□□□□ 0.57
LSM1-203ENST00000520755 MAST3O60307 1309 aa18.6■□□□□ 0.57
LSM1-203ENST00000520755 GOLIM4O00461 696 aa18.6■□□□□ 0.57
LSM1-203ENST00000520755 POTEIP0CG38 1075 aa18.6■□□□□ 0.57
LSM1-203ENST00000520755 POTEJP0CG39 1038 aa18.6■□□□□ 0.57
LSM1-203ENST00000520755 RBM5P52756 815 aaKnown RBP eCLIP18.6■□□□□ 0.57
LSM1-203ENST00000520755 BMP2KLQ5H9B9 411 aa18.6■□□□□ 0.57
LSM1-203ENST00000520755 SPTY2D1Q68D10 685 aaPredicted RBP18.6■□□□□ 0.57
LSM1-203ENST00000520755 ERICH6Q7L0X2 663 aa18.6■□□□□ 0.57
LSM1-203ENST00000520755 DZIP1Q86YF9 867 aaKnown RBP18.6■□□□□ 0.57
LSM1-203ENST00000520755 PIH1D3Q9NQM4 214 aaKnown RBP18.6■□□□□ 0.57
LSM1-203ENST00000520755 PAG1Q9NWQ8 432 aa18.6■□□□□ 0.57
LSM1-203ENST00000520755 LRP2BPQ9P2M1 347 aa18.6■□□□□ 0.57
LSM1-203ENST00000520755 CLEC11AQ9Y240 323 aa18.6■□□□□ 0.57
LSM1-203ENST00000520755 POLR2AP24928 1970 aaKnown RBP18.59■□□□□ 0.57
LSM1-203ENST00000520755 FOCADQ5VW36 1801 aa18.59■□□□□ 0.57
LSM1-203ENST00000520755 SDSP20132 328 aa18.59■□□□□ 0.57
LSM1-203ENST00000520755 MMP14P50281 582 aa18.59■□□□□ 0.57
LSM1-203ENST00000520755 HIRAP54198 1017 aaPredicted RBP18.59■□□□□ 0.57
LSM1-203ENST00000520755 CFAP100Q494V2 611 aa18.59■□□□□ 0.57
LSM1-203ENST00000520755 RAI14Q9P0K7 980 aa18.59■□□□□ 0.57
LSM1-203ENST00000520755 PCDHAC2Q9Y5I4 1007 aa18.59■□□□□ 0.57
LSM1-203ENST00000520755 CRKP46108 304 aa18.58■□□□□ 0.56
LSM1-203ENST00000520755 DLGAP5Q15398 846 aa18.58■□□□□ 0.56
LSM1-203ENST00000520755 TEKT1Q969V4 418 aa18.58■□□□□ 0.56
LSM1-203ENST00000520755 SERPINA10Q9UK55 444 aa18.58■□□□□ 0.56
LSM1-203ENST00000520755 DIXDC1Q155Q3 683 aa18.57■□□□□ 0.56
LSM1-203ENST00000520755 NBPF9Q3BBW0 867 aa18.57■□□□□ 0.56
LSM1-203ENST00000520755 LDHDQ86WU2 507 aa18.57■□□□□ 0.56
LSM1-203ENST00000520755 RFX7Q2KHR2 1363 aa18.56■□□□□ 0.56
LSM1-203ENST00000520755 ASTN2O75129 1339 aaPredicted RBP18.56■□□□□ 0.56
LSM1-203ENST00000520755 IDH1O75874 414 aaKnown RBP18.56■□□□□ 0.56
LSM1-203ENST00000520755 CHGBP05060 677 aa18.56■□□□□ 0.56
LSM1-203ENST00000520755 HDLBPQ00341 1268 aaKnown RBP18.56■□□□□ 0.56
LSM1-203ENST00000520755 MECOMQ03112 1051 aa18.56■□□□□ 0.56
LSM1-203ENST00000520755 TTF1Q15361 905 aaPredicted RBP18.56■□□□□ 0.56
LSM1-203ENST00000520755 KBTBD3Q8NAB2 608 aa18.56■□□□□ 0.56
LSM1-203ENST00000520755 TRIM6-TRIM34B2RNG4 842 aa18.55■□□□□ 0.56
LSM1-203ENST00000520755 WNT10BO00744 389 aa18.55■□□□□ 0.56
LSM1-203ENST00000520755 TOMM70O94826 608 aa18.55■□□□□ 0.56
LSM1-203ENST00000520755 CNTROBQ8N137 903 aa18.55■□□□□ 0.56
LSM1-203ENST00000520755 MTMR14Q8NCE2 650 aa18.55■□□□□ 0.56
LSM1-203ENST00000520755 ZNF384Q8TF68 577 aa18.55■□□□□ 0.56
LSM1-203ENST00000520755 NSUN4Q96CB9 384 aaKnown RBP18.55■□□□□ 0.56
LSM1-203ENST00000520755 EVI5LQ96CN4 794 aa18.55■□□□□ 0.56
LSM1-203ENST00000520755 PRMT6Q96LA8 375 aaPredicted RBP18.55■□□□□ 0.56
LSM1-203ENST00000520755 SPDYE2BA6NHP3 402 aa18.54■□□□□ 0.56
LSM1-203ENST00000520755 SPDYE6P0CI01 402 aa18.54■□□□□ 0.56
LSM1-203ENST00000520755 MAP1SQ66K74 1059 aaPredicted RBP18.54■□□□□ 0.56
LSM1-203ENST00000520755 HHIPL2Q6UWX4 724 aa18.54■□□□□ 0.56
LSM1-203ENST00000520755 SLF2Q8IX21 1173 aa18.54■□□□□ 0.56
LSM1-203ENST00000520755 RILPL2Q969X0 211 aa18.54■□□□□ 0.56
LSM1-203ENST00000520755 ZBED3Q96IU2 234 aaPredicted RBP18.54■□□□□ 0.56
LSM1-203ENST00000520755 GGA3Q9NZ52 723 aa18.54■□□□□ 0.56
LSM1-203ENST00000520755 DAGLAQ9Y4D2 1042 aa18.54■□□□□ 0.56
LSM1-203ENST00000520755 MYO1BO43795 1136 aa18.53■□□□□ 0.56
LSM1-203ENST00000520755 GSTO1P78417 241 aa18.53■□□□□ 0.56
LSM1-203ENST00000520755 MAP3K12Q12852 859 aa18.53■□□□□ 0.56
LSM1-203ENST00000520755 SLFNL1Q499Z3 407 aa18.53■□□□□ 0.56
LSM1-203ENST00000520755 ANGEL2Q5VTE6 544 aaKnown RBP18.53■□□□□ 0.56
LSM1-203ENST00000520755 NAA16Q6N069 864 aaPredicted RBP18.53■□□□□ 0.56
LSM1-203ENST00000520755 CHADLQ6NUI6 762 aa18.53■□□□□ 0.56
LSM1-203ENST00000520755 RBM46Q8TBY0 533 aaKnown RBP18.53■□□□□ 0.56
LSM1-203ENST00000520755 ZC3H15Q8WU90 426 aaKnown RBP18.53■□□□□ 0.56
LSM1-203ENST00000520755 ZDHHC15Q96MV8 337 aa18.53■□□□□ 0.56
LSM1-203ENST00000520755 FSD1Q9BTV5 496 aa18.53■□□□□ 0.56
LSM1-203ENST00000520755 MRIQ9BWK5 157 aa18.53■□□□□ 0.56
LSM1-203ENST00000520755 MROH7-TTC4A0A0A0MT08 1334 aa18.52■□□□□ 0.56
LSM1-203ENST00000520755 DDX60LQ5H9U9 1706 aaKnown RBP18.52■□□□□ 0.56
LSM1-203ENST00000520755 CLRN2A0PK11 232 aa18.52■□□□□ 0.56
LSM1-203ENST00000520755 MAGEB6Q8N7X4 407 aa18.52■□□□□ 0.56
LSM1-203ENST00000520755 SMC1BQ8NDV3 1235 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms