RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 DZIP1LQ8IYY4 767 aaKnown RBP36.87■■■■□ 3.49
SYNPO-203ENST00000518872 WDR66Q8TBY9 1149 aa36.87■■■■□ 3.49
SYNPO-203ENST00000518872 MAST3O60307 1309 aa36.86■■■■□ 3.49
SYNPO-203ENST00000518872 UBE2Q2LH0YL09 131 aa36.85■■■■□ 3.49
SYNPO-203ENST00000518872 KIF23Q02241 960 aaPredicted RBP36.85■■■■□ 3.49
SYNPO-203ENST00000518872 TNFAIP1Q13829 316 aa36.85■■■■□ 3.49
SYNPO-203ENST00000518872 ARMC9Q7Z3E5 817 aa36.85■■■■□ 3.49
SYNPO-203ENST00000518872 REM2Q8IYK8 340 aaPredicted RBP36.85■■■■□ 3.49
SYNPO-203ENST00000518872 VEZTQ9HBM0 779 aa36.85■■■■□ 3.49
SYNPO-203ENST00000518872 GNL3LQ9NVN8 582 aaKnown RBP36.85■■■■□ 3.49
SYNPO-203ENST00000518872 ZNF70Q9UC06 446 aaPredicted RBP36.85■■■■□ 3.49
SYNPO-203ENST00000518872 SSC5DA1L4H1 1573 aa36.84■■■■□ 3.49
SYNPO-203ENST00000518872 SEMA3EO15041 775 aa36.84■■■■□ 3.49
SYNPO-203ENST00000518872 TTLL12Q14166 644 aaPredicted RBP36.84■■■■□ 3.49
SYNPO-203ENST00000518872 MAP3K11Q16584 847 aa36.84■■■■□ 3.49
SYNPO-203ENST00000518872 FTSJ3Q8IY81 847 aaKnown RBP36.84■■■■□ 3.49
SYNPO-203ENST00000518872 TEKT1Q969V4 418 aa36.83■■■■□ 3.49
SYNPO-203ENST00000518872 SUPT20HL1Q3ZLR7 823 aa36.82■■■■□ 3.48
SYNPO-203ENST00000518872 LDLRAD1Q5T700 205 aa36.82■■■■□ 3.48
SYNPO-203ENST00000518872 TDRD3Q9H7E2 651 aaKnown RBP36.82■■■■□ 3.48
SYNPO-203ENST00000518872 RASA3Q14644 834 aa36.81■■■■□ 3.48
SYNPO-203ENST00000518872 ZDHHC15Q96MV8 337 aa36.81■■■■□ 3.48
SYNPO-203ENST00000518872 AKAP2Q9Y2D5 859 aa36.81■■■■□ 3.48
SYNPO-203ENST00000518872 PNMA6EA0A0J9YXQ4 647 aa36.8■■■■□ 3.48
SYNPO-203ENST00000518872 HHIPL2Q6UWX4 724 aa36.8■■■■□ 3.48
SYNPO-203ENST00000518872 SAGE1Q9NXZ1 904 aa36.8■■■■□ 3.48
SYNPO-203ENST00000518872 SALL1Q9NSC2 1324 aa36.8■■■■□ 3.48
SYNPO-203ENST00000518872 UNCXA6NJT0 531 aa36.79■■■■□ 3.48
SYNPO-203ENST00000518872 RLBP1P12271 317 aa36.79■■■■□ 3.48
SYNPO-203ENST00000518872 DENND2AQ9ULE3 1009 aa36.79■■■■□ 3.48
SYNPO-203ENST00000518872 PPP1R12BO60237 982 aaPredicted RBP36.78■■■■□ 3.48
SYNPO-203ENST00000518872 PHKA1P46020 1223 aa36.78■■■■□ 3.48
SYNPO-203ENST00000518872 CSRNP1Q96S65 589 aa36.78■■■■□ 3.48
SYNPO-203ENST00000518872 ZBTB7BO15156 539 aaPredicted RBP36.77■■■■□ 3.48
SYNPO-203ENST00000518872 TFCP2Q12800 502 aa36.77■■■■□ 3.48
SYNPO-203ENST00000518872 POLA2Q14181 598 aa36.77■■■■□ 3.48
SYNPO-203ENST00000518872 CCDC102BQ68D86 513 aa36.77■■■■□ 3.48
SYNPO-203ENST00000518872 ANGEL1Q9UNK9 670 aaKnown RBP36.77■■■■□ 3.48
SYNPO-203ENST00000518872 PDS5AQ29RF7 1337 aaKnown RBP36.77■■■■□ 3.48
SYNPO-203ENST00000518872 A0A1B0GUL7 405 aa36.76■■■■□ 3.48
SYNPO-203ENST00000518872 ADORA1P30542 326 aa36.76■■■■□ 3.48
SYNPO-203ENST00000518872 NBPF12Q5TAG4 269 aaPredicted RBP36.76■■■■□ 3.48
SYNPO-203ENST00000518872 LAMB1P07942 1786 aa36.76■■■■□ 3.47
SYNPO-203ENST00000518872 TIMM10P62072 90 aa36.75■■■■□ 3.47
SYNPO-203ENST00000518872 ITPRIPQ8IWB1 547 aa36.75■■■■□ 3.47
SYNPO-203ENST00000518872 SSH3Q8TE77 659 aa36.75■■■■□ 3.47
SYNPO-203ENST00000518872 TNNI2P48788 182 aa36.74■■■■□ 3.47
SYNPO-203ENST00000518872 ATP8B2P98198 1209 aa36.74■■■■□ 3.47
SYNPO-203ENST00000518872 PRKG1Q13976 671 aa36.74■■■■□ 3.47
SYNPO-203ENST00000518872 FKBP1CQ5VVH2 108 aa36.74■■■■□ 3.47
SYNPO-203ENST00000518872 APOBEC3HQ6NTF7 200 aaKnown RBP36.74■■■■□ 3.47
SYNPO-203ENST00000518872 TEPSINQ96N21 525 aa36.74■■■■□ 3.47
SYNPO-203ENST00000518872 TSKSQ9UJT2 592 aa36.74■■■■□ 3.47
SYNPO-203ENST00000518872 CASP8AP2Q9UKL3 1982 aa36.74■■■■□ 3.47
SYNPO-203ENST00000518872 G3BP1Q13283 466 aaKnown RBP eCLIP36.72■■■■□ 3.47
SYNPO-203ENST00000518872 MVPQ14764 893 aaKnown RBP36.72■■■■□ 3.47
SYNPO-203ENST00000518872 XAGE2Q96GT9 111 aa36.72■■■■□ 3.47
SYNPO-203ENST00000518872 ZGPATQ8N5A5 531 aaKnown RBP36.71■■■■□ 3.47
SYNPO-203ENST00000518872 RNF186Q9NXI6 227 aa36.71■■■■□ 3.47
SYNPO-203ENST00000518872 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP36.71■■■■□ 3.47
SYNPO-203ENST00000518872 MS4A1P11836 297 aa36.7■■■■□ 3.47
SYNPO-203ENST00000518872 PRDX5P30044 214 aa36.7■■■■□ 3.47
SYNPO-203ENST00000518872 FAM83AQ86UY5 434 aa36.7■■■■□ 3.47
SYNPO-203ENST00000518872 OTOFQ9HC10 1997 aa36.69■■■■□ 3.46
SYNPO-203ENST00000518872 TCP10L2B9ZVM9 353 aa36.69■■■■□ 3.46
SYNPO-203ENST00000518872 USP2O75604 605 aaPredicted RBP36.69■■■■□ 3.46
SYNPO-203ENST00000518872 IREB2P48200 963 aaKnown RBP36.69■■■■□ 3.46
SYNPO-203ENST00000518872 RASGRF1Q13972 1273 aa36.69■■■■□ 3.46
SYNPO-203ENST00000518872 TMOD2Q9NZR1 351 aa36.69■■■■□ 3.46
SYNPO-203ENST00000518872 FZD1Q9UP38 647 aa36.69■■■■□ 3.46
SYNPO-203ENST00000518872 LDHBP07195 334 aaKnown RBP36.68■■■■□ 3.46
SYNPO-203ENST00000518872 TM4SF4P48230 202 aa36.68■■■■□ 3.46
SYNPO-203ENST00000518872 MYH2Q9UKX2 1941 aa36.67■■■■□ 3.46
SYNPO-203ENST00000518872 SPRYD7Q5W111 196 aa36.67■■■■□ 3.46
SYNPO-203ENST00000518872 GPR108Q9NPR9 543 aa36.67■■■■□ 3.46
SYNPO-203ENST00000518872 DAGLAQ9Y4D2 1042 aa36.67■■■■□ 3.46
SYNPO-203ENST00000518872 RPAP1Q9BWH6 1393 aaPredicted RBP36.66■■■■□ 3.46
SYNPO-203ENST00000518872 TMEM39BQ9GZU3 492 aa36.66■■■■□ 3.46
SYNPO-203ENST00000518872 SLC10A4Q96EP9 437 aa36.65■■■■□ 3.46
SYNPO-203ENST00000518872 C1orf115Q9H7X2 142 aa36.65■■■■□ 3.46
SYNPO-203ENST00000518872 NOP58Q9Y2X3 529 aaKnown RBP36.65■■■■□ 3.46
SYNPO-203ENST00000518872 TRPA1O75762 1119 aa36.64■■■■□ 3.46
SYNPO-203ENST00000518872 ZBTB48P10074 688 aaPredicted RBP36.64■■■■□ 3.46
SYNPO-203ENST00000518872 ANKRD13AQ8IZ07 590 aa36.64■■■■□ 3.46
SYNPO-203ENST00000518872 PANK1Q8TE04 598 aa36.64■■■■□ 3.46
SYNPO-203ENST00000518872 NEUROD6Q96NK8 337 aa36.64■■■■□ 3.46
SYNPO-203ENST00000518872 SREBF2Q12772 1141 aa36.63■■■■□ 3.45
SYNPO-203ENST00000518872 DIXDC1Q155Q3 683 aa36.63■■■■□ 3.45
SYNPO-203ENST00000518872 CDAN1Q8IWY9 1227 aa36.63■■■■□ 3.45
SYNPO-203ENST00000518872 ARID4AP29374 1257 aaPredicted RBP36.62■■■■□ 3.45
SYNPO-203ENST00000518872 CACNB3P54284 484 aa36.62■■■■□ 3.45
SYNPO-203ENST00000518872 CLMNQ96JQ2 1002 aa36.62■■■■□ 3.45
SYNPO-203ENST00000518872 GAKO14976 1311 aa36.6■■■■□ 3.45
SYNPO-203ENST00000518872 SPTY2D1Q68D10 685 aaPredicted RBP36.6■■■■□ 3.45
SYNPO-203ENST00000518872 CEP85Q6P2H3 762 aa36.6■■■■□ 3.45
SYNPO-203ENST00000518872 HOOK2Q96ED9 719 aa36.6■■■■□ 3.45
SYNPO-203ENST00000518872 WNK4Q96J92 1243 aa36.6■■■■□ 3.45
SYNPO-203ENST00000518872 RCAN3Q9UKA8 241 aa36.6■■■■□ 3.45
SYNPO-203ENST00000518872 SURF6O75683 361 aaKnown RBP36.59■■■■□ 3.45
SYNPO-203ENST00000518872 CDC42EP5Q6NZY7 148 aa36.59■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms