RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620	NKX2-3	Q8TAU0	364 aa		13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620	TMEM39B	Q9GZU3	492 aa		13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620	TDRD3	Q9H7E2	651 aa	Known RBP	13.46	□□□□□ -0.25
CLDND1-231	ENST00000515620		A0A1B0GUL6	1792 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	ARAP2	Q8WZ64	1704 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	SPDYE5	A6NIY4	337 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	BTBD19	C9JJ37	291 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	CCL5	P13501	91 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	GNAI1	P63096	354 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	RALBP1	Q15311	655 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	C15orf52	Q6ZUT6	534 aa	Known RBP	13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	UBE2Q1	Q7Z7E8	422 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	LRCH3	Q96II8	777 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	PLA2G12B	Q9BX93	195 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	NR2E3	Q9Y5X4	410 aa		13.45	□□□□□ -0.26
CLDND1-231	ENST00000515620	ANKRD18B	A2A2Z9	1011 aa		13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	ZBTB7B	O15156	539 aa	Predicted RBP	13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	CTGF	P29279	349 aa		13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	GRK4	P32298	578 aa		13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	GJA8	P48165	433 aa		13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	RAET1E	Q8TD07	263 aa		13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	TRIM47	Q96LD4	638 aa		13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	ZCCHC17	Q9NP64	241 aa	Known RBP	13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	SRRD	Q9UH36	339 aa		13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	TTF2	Q9UNY4	1162 aa	Known RBP	13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	SNCAIP	Q9Y6H5	919 aa		13.44	□□□□□ -0.26
CLDND1-231	ENST00000515620	FARP2	O94887	1054 aa	Predicted RBP	13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	CSF1R	P07333	972 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	GJB1	P08034	283 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	PSMC4	P43686	418 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	SNAPC2	Q13487	334 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	GCKR	Q14397	625 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	MFSD14B	Q5SR56	506 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	ERO1B	Q86YB8	467 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	DZIP1L	Q8IYY4	767 aa	Known RBP	13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	WRNIP1	Q96S55	665 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	RNF208	Q9H0X6	261 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	BIN2	Q9UBW5	565 aa	Predicted RBP	13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	CPA4	Q9UI42	421 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	SERPINA10	Q9UK55	444 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	ADAMTS8	Q9UP79	889 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	RIPOR2	Q9Y4F9	1068 aa		13.43	□□□□□ -0.26
CLDND1-231	ENST00000515620	COL6A3	P12111	3177 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	MYPN	Q86TC9	1320 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620		A0A1W2PPC1	479 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	IRF6	O14896	467 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	OSBP	P22059	807 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	TNNI2	P48788	182 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	MNX1	P50219	401 aa	Predicted RBP	13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	CASP7	P55210	303 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	CALD1	Q05682	793 aa	Known RBP	13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	TSPYL6	Q8N831	410 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	STK31	Q9BXU1	1019 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	CHMP4A	Q9BY43	222 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	LAMA3	Q16787	3333 aa		13.42	□□□□□ -0.26
CLDND1-231	ENST00000515620	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.41	□□□□□ -0.26
CLDND1-231	ENST00000515620	PLIN1	O60240	522 aa		13.41	□□□□□ -0.26
CLDND1-231	ENST00000515620	FMNL1	O95466	1100 aa	Predicted RBP	13.41	□□□□□ -0.26
CLDND1-231	ENST00000515620	HOXD10	P28358	340 aa		13.41	□□□□□ -0.26
CLDND1-231	ENST00000515620	PPIL2	Q13356	520 aa		13.41	□□□□□ -0.26
CLDND1-231	ENST00000515620	C17orf99	Q6UX52	265 aa		13.41	□□□□□ -0.26
CLDND1-231	ENST00000515620	U2AF1L4	Q8WU68	220 aa	Known RBP	13.41	□□□□□ -0.26
CLDND1-231	ENST00000515620	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.41	□□□□□ -0.26
CLDND1-231	ENST00000515620	CHMP3	Q9Y3E7	222 aa		13.41	□□□□□ -0.26
CLDND1-231	ENST00000515620	FAM205A	Q6ZU69	1335 aa		13.4	□□□□□ -0.26
CLDND1-231	ENST00000515620	EVI5	O60447	810 aa		13.4	□□□□□ -0.26
CLDND1-231	ENST00000515620	CRK	P46108	304 aa		13.4	□□□□□ -0.26
CLDND1-231	ENST00000515620	CACNB3	P54284	484 aa		13.4	□□□□□ -0.26
CLDND1-231	ENST00000515620	UBXN2A	P68543	259 aa		13.4	□□□□□ -0.26
CLDND1-231	ENST00000515620	IFIT5	Q13325	482 aa	Known RBP	13.4	□□□□□ -0.26
CLDND1-231	ENST00000515620	G2E3	Q7L622	706 aa		13.4	□□□□□ -0.26
CLDND1-231	ENST00000515620	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.4	□□□□□ -0.26
CLDND1-231	ENST00000515620	MYH16	Q9H6N6	1097 aa		13.4	□□□□□ -0.26
CLDND1-231	ENST00000515620		A0A0C4DFX4	3053 aa		13.4	□□□□□ -0.26
CLDND1-231	ENST00000515620	PRKCZ	Q05513	592 aa		13.39	□□□□□ -0.27
CLDND1-231	ENST00000515620	UNC93B1	Q9H1C4	597 aa		13.39	□□□□□ -0.27
CLDND1-231	ENST00000515620	RNF39	Q9H2S5	420 aa		13.39	□□□□□ -0.27
CLDND1-231	ENST00000515620	STAP2	Q9UGK3	403 aa		13.39	□□□□□ -0.27
CLDND1-231	ENST00000515620	ADGRA2	Q96PE1	1338 aa		13.39	□□□□□ -0.27
CLDND1-231	ENST00000515620	PDHX	O00330	501 aa		13.38	□□□□□ -0.27
CLDND1-231	ENST00000515620	APAF1	O14727	1248 aa		13.38	□□□□□ -0.27
CLDND1-231	ENST00000515620	GYG1	P46976	350 aa		13.38	□□□□□ -0.27
CLDND1-231	ENST00000515620	ANKRD23	Q86SG2	305 aa		13.38	□□□□□ -0.27
CLDND1-231	ENST00000515620	TDRD7	Q8NHU6	1098 aa	Known RBP	13.38	□□□□□ -0.27
CLDND1-231	ENST00000515620	ZNF594	Q96JF6	807 aa	Predicted RBP	13.38	□□□□□ -0.27
CLDND1-231	ENST00000515620	GRIK5	Q16478	980 aa		13.37	□□□□□ -0.27
CLDND1-231	ENST00000515620	TAF7L	Q5H9L4	462 aa		13.37	□□□□□ -0.27
CLDND1-231	ENST00000515620	SLAIN1	Q8ND83	568 aa		13.37	□□□□□ -0.27
CLDND1-231	ENST00000515620	TSR2	Q969E8	191 aa	Known RBP	13.37	□□□□□ -0.27
CLDND1-231	ENST00000515620	CNNM1	Q9NRU3	951 aa		13.37	□□□□□ -0.27
CLDND1-231	ENST00000515620	SGPL1	O95470	568 aa		13.36	□□□□□ -0.27
CLDND1-231	ENST00000515620	SLC4A2	P04920	1241 aa		13.36	□□□□□ -0.27
CLDND1-231	ENST00000515620	HIBADH	P31937	336 aa	Known RBP	13.36	□□□□□ -0.27
CLDND1-231	ENST00000515620	FCGRT	P55899	365 aa		13.36	□□□□□ -0.27
CLDND1-231	ENST00000515620	FOXO4	P98177	505 aa		13.36	□□□□□ -0.27
CLDND1-231	ENST00000515620	PPAT	Q06203	517 aa		13.36	□□□□□ -0.27
CLDND1-231	ENST00000515620	FLII	Q13045	1269 aa		13.36	□□□□□ -0.27
CLDND1-231	ENST00000515620	LDHAL6A	Q6ZMR3	332 aa		13.36	□□□□□ -0.27
CLDND1-231	ENST00000515620	DEFB123	Q8N688	67 aa		13.36	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms