RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 ERCC3P19447 782 aa6.59□□□□□ -1.35
NUP54-212ENST00000513248 ENOX2Q16206 610 aaKnown RBP6.59□□□□□ -1.35
NUP54-212ENST00000513248 FBXO33Q7Z6M2 555 aa6.59□□□□□ -1.35
NUP54-212ENST00000513248 HHIPQ96QV1 700 aa6.59□□□□□ -1.35
NUP54-212ENST00000513248 OSMRQ99650 979 aa6.59□□□□□ -1.35
NUP54-212ENST00000513248 LATS2Q9NRM7 1088 aa6.59□□□□□ -1.35
NUP54-212ENST00000513248 MFAP1P55081 439 aaKnown RBP6.58□□□□□ -1.36
NUP54-212ENST00000513248 PLCB3Q01970 1234 aa6.58□□□□□ -1.36
NUP54-212ENST00000513248 PEAR1Q5VY43 1037 aaPredicted RBP6.58□□□□□ -1.36
NUP54-212ENST00000513248 USPL1Q5W0Q7 1092 aa6.58□□□□□ -1.36
NUP54-212ENST00000513248 BEND4Q6ZU67 534 aa6.58□□□□□ -1.36
NUP54-212ENST00000513248 GALNT12Q8IXK2 581 aa6.58□□□□□ -1.36
NUP54-212ENST00000513248 TMEM102Q8N9M5 508 aaPredicted RBP6.58□□□□□ -1.36
NUP54-212ENST00000513248 UBASH3BQ8TF42 649 aa6.58□□□□□ -1.36
NUP54-212ENST00000513248 KLHDC7BQ96G42 594 aa6.58□□□□□ -1.36
NUP54-212ENST00000513248 CSRNP1Q96S65 589 aa6.58□□□□□ -1.36
NUP54-212ENST00000513248 RNF208Q9H0X6 261 aa6.58□□□□□ -1.36
NUP54-212ENST00000513248 SH2B1Q9NRF2 756 aaPredicted RBP6.58□□□□□ -1.36
NUP54-212ENST00000513248 SART1O43290 800 aaKnown RBP6.57□□□□□ -1.36
NUP54-212ENST00000513248 P4HBP07237 508 aaKnown RBP6.57□□□□□ -1.36
NUP54-212ENST00000513248 BMP3P12645 472 aa6.57□□□□□ -1.36
NUP54-212ENST00000513248 CDC25BP30305 580 aa6.57□□□□□ -1.36
NUP54-212ENST00000513248 CABP4P57796 275 aa6.57□□□□□ -1.36
NUP54-212ENST00000513248 CPSF6Q16630 551 aaKnown RBP eCLIP6.57□□□□□ -1.36
NUP54-212ENST00000513248 RGS22Q8NE09 1264 aa6.57□□□□□ -1.36
NUP54-212ENST00000513248 SHKBP1Q8TBC3 707 aa6.57□□□□□ -1.36
NUP54-212ENST00000513248 NXPE3Q969Y0 559 aa6.57□□□□□ -1.36
NUP54-212ENST00000513248 MEGF11A6BM72 1044 aa6.56□□□□□ -1.36
NUP54-212ENST00000513248 DDX3YO15523 660 aaKnown RBP6.56□□□□□ -1.36
NUP54-212ENST00000513248 CPNE3O75131 537 aaKnown RBP6.56□□□□□ -1.36
NUP54-212ENST00000513248 PREPP48147 710 aa6.56□□□□□ -1.36
NUP54-212ENST00000513248 KIAA0319Q5VV43 1072 aa6.56□□□□□ -1.36
NUP54-212ENST00000513248 SOX13Q9UN79 622 aa6.56□□□□□ -1.36
NUP54-212ENST00000513248 UNC13AQ9UPW8 1703 aa6.56□□□□□ -1.36
NUP54-212ENST00000513248 FDX2Q6P4F2 183 aa6.55□□□□□ -1.36
NUP54-212ENST00000513248 CCDC74AQ96AQ1 378 aa6.55□□□□□ -1.36
NUP54-212ENST00000513248 BHLHE41Q9C0J9 482 aaPredicted RBP6.55□□□□□ -1.36
NUP54-212ENST00000513248 KCNF1Q9H3M0 494 aa6.55□□□□□ -1.36
NUP54-212ENST00000513248 ADGRE2Q9UHX3 823 aa6.55□□□□□ -1.36
NUP54-212ENST00000513248 ARID1BQ8NFD5 2236 aaPredicted RBP6.55□□□□□ -1.36
NUP54-212ENST00000513248 BICRAQ9NZM4 1560 aa6.54□□□□□ -1.36
NUP54-212ENST00000513248 A0A1W2PP55 124 aa6.54□□□□□ -1.36
NUP54-212ENST00000513248 GIMAP7Q8NHV1 300 aa6.54□□□□□ -1.36
NUP54-212ENST00000513248 ASAP3Q8TDY4 903 aa6.54□□□□□ -1.36
NUP54-212ENST00000513248 BSNDQ8WZ55 320 aa6.54□□□□□ -1.36
NUP54-212ENST00000513248 SETDB2Q96T68 719 aa6.54□□□□□ -1.36
NUP54-212ENST00000513248 RUSC1Q9BVN2 902 aa6.54□□□□□ -1.36
NUP54-212ENST00000513248 PIM2Q9P1W9 311 aa6.54□□□□□ -1.36
NUP54-212ENST00000513248 PNMA6FA0A0J9YX94 578 aa6.53□□□□□ -1.36
NUP54-212ENST00000513248 FBF1Q8TES7 1133 aa6.53□□□□□ -1.36
NUP54-212ENST00000513248 LIN7BQ9HAP6 207 aa6.53□□□□□ -1.36
NUP54-212ENST00000513248 NPHS2Q9NP85 383 aa6.53□□□□□ -1.36
NUP54-212ENST00000513248 WWC3Q9ULE0 1092 aa6.53□□□□□ -1.36
NUP54-212ENST00000513248 METTL12A8MUP2 240 aa6.52□□□□□ -1.37
NUP54-212ENST00000513248 WDR64B1ANS9 1081 aa6.52□□□□□ -1.37
NUP54-212ENST00000513248 ARL4DP49703 201 aa6.52□□□□□ -1.37
NUP54-212ENST00000513248 VN1R5Q7Z5H4 357 aa6.52□□□□□ -1.37
NUP54-212ENST00000513248 CCNJLQ8IV13 435 aa6.52□□□□□ -1.37
NUP54-212ENST00000513248 GLIS3Q8NEA6 775 aa6.52□□□□□ -1.37
NUP54-212ENST00000513248 TCF12Q99081 682 aa6.52□□□□□ -1.37
NUP54-212ENST00000513248 SUGCTQ9HAC7 445 aa6.52□□□□□ -1.37
NUP54-212ENST00000513248 GAS2O43903 313 aaKnown RBP6.51□□□□□ -1.37
NUP54-212ENST00000513248 PRNPP04156 253 aa6.51□□□□□ -1.37
NUP54-212ENST00000513248 FOSL1P15407 271 aa6.51□□□□□ -1.37
NUP54-212ENST00000513248 MAP4P27816 1152 aaKnown RBP6.51□□□□□ -1.37
NUP54-212ENST00000513248 NLRP12P59046 1061 aa6.51□□□□□ -1.37
NUP54-212ENST00000513248 TAGLNQ01995 201 aaKnown RBP6.51□□□□□ -1.37
NUP54-212ENST00000513248 C19orf57Q0VDD7 668 aa6.51□□□□□ -1.37
NUP54-212ENST00000513248 IKBKEQ14164 716 aa6.51□□□□□ -1.37
NUP54-212ENST00000513248 MSMPQ1L6U9 139 aa6.51□□□□□ -1.37
NUP54-212ENST00000513248 EPS8L3Q8TE67 593 aaKnown RBP6.51□□□□□ -1.37
NUP54-212ENST00000513248 SLC7A3Q8WY07 619 aa6.51□□□□□ -1.37
NUP54-212ENST00000513248 SHROOM4Q9ULL8 1493 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 GADD45BO75293 160 aaPredicted RBP6.5□□□□□ -1.37
NUP54-212ENST00000513248 PRPF40AO75400 957 aaKnown RBP6.5□□□□□ -1.37
NUP54-212ENST00000513248 TIAF1O95411 115 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 FZD5Q13467 585 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 SPRED3Q2MJR0 410 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 ALG1LQ6GMV1 187 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 PRPF40BQ6NWY9 871 aaKnown RBP6.5□□□□□ -1.37
NUP54-212ENST00000513248 PI16Q6UXB8 463 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 SMG8Q8ND04 991 aaKnown RBP6.5□□□□□ -1.37
NUP54-212ENST00000513248 MFSD14AQ96MC6 490 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 TMPRSS13Q9BYE2 586 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 EHD4Q9H223 541 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 ATG3Q9NT62 314 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 ANGEL1Q9UNK9 670 aaKnown RBP6.5□□□□□ -1.37
NUP54-212ENST00000513248 LEMD3Q9Y2U8 911 aa6.5□□□□□ -1.37
NUP54-212ENST00000513248 A0A096LPE4 126 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 A0A1W2PPZ6 126 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 RBM47A0AV96 593 aaKnown RBP6.49□□□□□ -1.37
NUP54-212ENST00000513248 EIF4EBP3O60516 100 aaPredicted RBP6.49□□□□□ -1.37
NUP54-212ENST00000513248 LDHBP07195 334 aaKnown RBP6.49□□□□□ -1.37
NUP54-212ENST00000513248 HOXA10P31260 410 aaPredicted RBP6.49□□□□□ -1.37
NUP54-212ENST00000513248 MAPK8P45983 427 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 GRIA4P48058 902 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 EAPPQ56P03 285 aaPredicted RBP6.49□□□□□ -1.37
NUP54-212ENST00000513248 LCE1DQ5T752 114 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 NUTM2GQ5VZR2 741 aa6.49□□□□□ -1.37
NUP54-212ENST00000513248 HGSNATQ68CP4 663 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms