RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 SNED1Q8TER0 1413 aa9.33□□□□□ -0.92
USP46-208ENST00000512656 TCERG1O14776 1098 aaKnown RBP9.33□□□□□ -0.92
USP46-208ENST00000512656 PPIP5K2O43314 1243 aa9.33□□□□□ -0.92
USP46-208ENST00000512656 ANXA1P04083 346 aa9.33□□□□□ -0.92
USP46-208ENST00000512656 KCNH2Q12809 1159 aa9.33□□□□□ -0.92
USP46-208ENST00000512656 TCIRG1Q13488 830 aa9.33□□□□□ -0.92
USP46-208ENST00000512656 PROSER3Q2NL68 480 aa9.33□□□□□ -0.92
USP46-208ENST00000512656 TUSC1Q2TAM9 212 aa9.33□□□□□ -0.92
USP46-208ENST00000512656 DDX46Q7L014 1031 aaKnown RBP9.33□□□□□ -0.92
USP46-208ENST00000512656 NLRP10Q86W26 655 aa9.33□□□□□ -0.92
USP46-208ENST00000512656 CCDC146Q8IYE0 955 aa9.33□□□□□ -0.92
USP46-208ENST00000512656 MKRN1Q9UHC7 482 aaKnown RBP9.33□□□□□ -0.92
USP46-208ENST00000512656 TRMT112Q9UI30 125 aaKnown RBP9.33□□□□□ -0.92
USP46-208ENST00000512656 ATP6V0A2Q9Y487 856 aa9.33□□□□□ -0.92
USP46-208ENST00000512656 LAS1LQ9Y4W2 734 aaKnown RBP9.33□□□□□ -0.92
USP46-208ENST00000512656 SH3TC1Q8TE82 1336 aa9.32□□□□□ -0.92
USP46-208ENST00000512656 J3QL48 77 aa9.32□□□□□ -0.92
USP46-208ENST00000512656 CALD1Q05682 793 aaKnown RBP9.32□□□□□ -0.92
USP46-208ENST00000512656 PDE4DQ08499 809 aa9.32□□□□□ -0.92
USP46-208ENST00000512656 HDGFL1Q5TGJ6 251 aa9.32□□□□□ -0.92
USP46-208ENST00000512656 DPP8Q6V1X1 898 aaPredicted RBP9.32□□□□□ -0.92
USP46-208ENST00000512656 TMC4Q7Z404 712 aa9.32□□□□□ -0.92
USP46-208ENST00000512656 SP8Q8IXZ3 490 aa9.32□□□□□ -0.92
USP46-208ENST00000512656 CNTROBQ8N137 903 aa9.32□□□□□ -0.92
USP46-208ENST00000512656 UNC93B1Q9H1C4 597 aa9.32□□□□□ -0.92
USP46-208ENST00000512656 DBF4Q9UBU7 674 aaPredicted RBP9.32□□□□□ -0.92
USP46-208ENST00000512656 ADAMTS8Q9UP79 889 aa9.32□□□□□ -0.92
USP46-208ENST00000512656 CNTNAP1P78357 1384 aa9.32□□□□□ -0.92
USP46-208ENST00000512656 ABCC4O15439 1325 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 SIAH2O43255 324 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 HCLS1P14317 486 aaPredicted RBP9.31□□□□□ -0.92
USP46-208ENST00000512656 SH3BP2P78314 561 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 MAP1SQ66K74 1059 aaPredicted RBP9.31□□□□□ -0.92
USP46-208ENST00000512656 LYPD8Q6UX82 237 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 USP50Q70EL3 339 aaPredicted RBP9.31□□□□□ -0.92
USP46-208ENST00000512656 MPNDQ8N594 471 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 EHBP1Q8NDI1 1231 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 PLBD2Q8NHP8 589 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 AIDAQ96BJ3 306 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 RTFDC1Q9BY42 306 aaPredicted RBP9.31□□□□□ -0.92
USP46-208ENST00000512656 CHMP4AQ9BY43 222 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 HYPKQ9NX55 129 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 CHPF2Q9P2E5 772 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 ZNRF3Q9ULT6 936 aa9.31□□□□□ -0.92
USP46-208ENST00000512656 HSP90B1P14625 803 aaKnown RBP9.3□□□□□ -0.92
USP46-208ENST00000512656 GRAPQ13588 217 aa9.3□□□□□ -0.92
USP46-208ENST00000512656 TNIP1Q15025 636 aa9.3□□□□□ -0.92
USP46-208ENST00000512656 AOC3Q16853 763 aa9.3□□□□□ -0.92
USP46-208ENST00000512656 DEFB115Q30KQ5 88 aa9.3□□□□□ -0.92
USP46-208ENST00000512656 RIC3Q7Z5B4 369 aa9.3□□□□□ -0.92
USP46-208ENST00000512656 GRAPLQ8TC17 118 aaPredicted RBP9.3□□□□□ -0.92
USP46-208ENST00000512656 DACH1Q9UI36 760 aa9.3□□□□□ -0.92
USP46-208ENST00000512656 RASSF10A6NK89 507 aa9.29□□□□□ -0.92
USP46-208ENST00000512656 EPS15P42566 896 aa9.29□□□□□ -0.92
USP46-208ENST00000512656 VEGFBP49765 207 aa9.29□□□□□ -0.92
USP46-208ENST00000512656 SCNN1DP51172 638 aa9.29□□□□□ -0.92
USP46-208ENST00000512656 KIAA2012Q0VF49 1180 aa9.29□□□□□ -0.92
USP46-208ENST00000512656 KRT24Q2M2I5 525 aa9.29□□□□□ -0.92
USP46-208ENST00000512656 DUSP27Q5VZP5 1158 aa9.29□□□□□ -0.92
USP46-208ENST00000512656 CIAPIN1Q6FI81 312 aa9.29□□□□□ -0.92
USP46-208ENST00000512656 ADARB2Q9NS39 739 aaKnown RBP9.29□□□□□ -0.92
USP46-208ENST00000512656 ABT1Q9ULW3 272 aaKnown RBP9.29□□□□□ -0.92
USP46-208ENST00000512656 PCDHB15Q9Y5E8 787 aa9.29□□□□□ -0.92
USP46-208ENST00000512656 CDHR2Q9BYE9 1310 aa9.29□□□□□ -0.92
USP46-208ENST00000512656 CTCFP49711 727 aaPredicted RBP9.28□□□□□ -0.92
USP46-208ENST00000512656 GNAI1P63096 354 aa9.28□□□□□ -0.92
USP46-208ENST00000512656 CXCL9Q07325 125 aa9.28□□□□□ -0.92
USP46-208ENST00000512656 TRIM28Q13263 835 aaKnown RBP9.28□□□□□ -0.92
USP46-208ENST00000512656 HPS1Q92902 700 aa9.28□□□□□ -0.92
USP46-208ENST00000512656 ISCA1Q9BUE6 129 aa9.28□□□□□ -0.92
USP46-208ENST00000512656 PRKRIP1Q9H875 184 aaPredicted RBP9.28□□□□□ -0.92
USP46-208ENST00000512656 SENP2Q9HC62 589 aa9.28□□□□□ -0.92
USP46-208ENST00000512656 IFT57Q9NWB7 429 aa9.28□□□□□ -0.92
USP46-208ENST00000512656 GPRC5DQ9NZD1 345 aa9.28□□□□□ -0.92
USP46-208ENST00000512656 GMPR2Q9P2T1 348 aaKnown RBP9.28□□□□□ -0.92
USP46-208ENST00000512656 ADAMTSL1Q8N6G6 1762 aa9.27□□□□□ -0.92
USP46-208ENST00000512656 COL4A5P29400 1685 aa9.27□□□□□ -0.93
USP46-208ENST00000512656 ALDH1A1P00352 501 aa9.27□□□□□ -0.93
USP46-208ENST00000512656 ECE1P42892 770 aa9.27□□□□□ -0.93
USP46-208ENST00000512656 MAP2K1Q02750 393 aaPredicted RBP9.27□□□□□ -0.93
USP46-208ENST00000512656 SF3B3Q15393 1217 aaKnown RBP9.27□□□□□ -0.93
USP46-208ENST00000512656 FAM89AQ96GI7 184 aa9.27□□□□□ -0.93
USP46-208ENST00000512656 BCL2L13Q9BXK5 485 aa9.27□□□□□ -0.93
USP46-208ENST00000512656 ATP13A2Q9NQ11 1180 aa9.27□□□□□ -0.93
USP46-208ENST00000512656 PRDM10Q9NQV6 1147 aa9.27□□□□□ -0.93
USP46-208ENST00000512656 MBIPQ9NS73 344 aa9.27□□□□□ -0.93
USP46-208ENST00000512656 ANKRD36CQ5JPF3 1778 aa9.27□□□□□ -0.93
USP46-208ENST00000512656 CFAP99D6REC4 459 aa9.26□□□□□ -0.93
USP46-208ENST00000512656 ATP5J2-PTCD1G3V325 749 aa9.26□□□□□ -0.93
USP46-208ENST00000512656 IRS4O14654 1257 aaPredicted RBP9.26□□□□□ -0.93
USP46-208ENST00000512656 APAF1O14727 1248 aa9.26□□□□□ -0.93
USP46-208ENST00000512656 FOXN1O15353 648 aa9.26□□□□□ -0.93
USP46-208ENST00000512656 RAD17O75943 681 aa9.26□□□□□ -0.93
USP46-208ENST00000512656 ZNF853P0CG23 659 aa9.26□□□□□ -0.93
USP46-208ENST00000512656 VARSP26640 1264 aaKnown RBP9.26□□□□□ -0.93
USP46-208ENST00000512656 GMPSP49915 693 aaPredicted RBP9.26□□□□□ -0.93
USP46-208ENST00000512656 WASHC4Q2M389 1173 aa9.26□□□□□ -0.93
USP46-208ENST00000512656 MYSM1Q5VVJ2 828 aa9.26□□□□□ -0.93
USP46-208ENST00000512656 SLC51AQ86UW1 340 aa9.26□□□□□ -0.93
USP46-208ENST00000512656 ZNF511Q8NB15 262 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms