RNA–Protein interactions for RNA: ENST00000509101.1

CXCL1-202, Transcript of C-X-C motif chemokine ligand 1, humanhuman

TSL 3

Gene CXCL1, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-202ENST00000509101 VGLL4Q14135 290 aa20.28■□□□□ 0.84
CXCL1-202ENST00000509101 TAF1CQ15572 869 aaPredicted RBP20.28■□□□□ 0.84
CXCL1-202ENST00000509101 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.28■□□□□ 0.84
CXCL1-202ENST00000509101 TDRD7Q8NHU6 1098 aaKnown RBP20.28■□□□□ 0.84
CXCL1-202ENST00000509101 BRI3BPQ8WY22 251 aa20.28■□□□□ 0.84
CXCL1-202ENST00000509101 TMEM39BQ9GZU3 492 aa20.28■□□□□ 0.84
CXCL1-202ENST00000509101 CCL15-CCL14A0A0B4J2E2 113 aa20.27■□□□□ 0.84
CXCL1-202ENST00000509101 CCL15Q16663 113 aa20.27■□□□□ 0.84
CXCL1-202ENST00000509101 DZIP1LQ8IYY4 767 aaKnown RBP20.27■□□□□ 0.84
CXCL1-202ENST00000509101 ZNF333Q96JL9 665 aa20.27■□□□□ 0.84
CXCL1-202ENST00000509101 PTCH2Q9Y6C5 1203 aa20.27■□□□□ 0.84
CXCL1-202ENST00000509101 HIBADHP31937 336 aaKnown RBP20.26■□□□□ 0.83
CXCL1-202ENST00000509101 CRKP46108 304 aa20.26■□□□□ 0.83
CXCL1-202ENST00000509101 UBE4AQ14139 1066 aa20.26■□□□□ 0.83
CXCL1-202ENST00000509101 SLC9C1Q4G0N8 1177 aa20.26■□□□□ 0.83
CXCL1-202ENST00000509101 OTUD5Q96G74 571 aa20.26■□□□□ 0.83
CXCL1-202ENST00000509101 TMEM106CQ9BVX2 250 aa20.26■□□□□ 0.83
CXCL1-202ENST00000509101 ZFYVE28Q9HCC9 887 aa20.26■□□□□ 0.83
CXCL1-202ENST00000509101 SALL2Q9Y467 1007 aaPredicted RBP20.26■□□□□ 0.83
CXCL1-202ENST00000509101 CEP290O15078 2479 aa20.26■□□□□ 0.83
CXCL1-202ENST00000509101 TNNI2P48788 182 aa20.25■□□□□ 0.83
CXCL1-202ENST00000509101 GTF2A2P52657 109 aa20.25■□□□□ 0.83
CXCL1-202ENST00000509101 FAM43AQ8N2R8 423 aa20.25■□□□□ 0.83
CXCL1-202ENST00000509101 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.25■□□□□ 0.83
CXCL1-202ENST00000509101 FAM84BQ96KN1 310 aaPredicted RBP20.25■□□□□ 0.83
CXCL1-202ENST00000509101 PUS3Q9BZE2 481 aaKnown RBP20.25■□□□□ 0.83
CXCL1-202ENST00000509101 C9orf78Q9NZ63 289 aaPredicted RBP20.25■□□□□ 0.83
CXCL1-202ENST00000509101 CSADQ9Y600 493 aa20.25■□□□□ 0.83
CXCL1-202ENST00000509101 MAP3K9P80192 1104 aa20.24■□□□□ 0.83
CXCL1-202ENST00000509101 GRIK5Q16478 980 aa20.24■□□□□ 0.83
CXCL1-202ENST00000509101 IQSEC3Q9UPP2 1182 aaPredicted RBP20.24■□□□□ 0.83
CXCL1-202ENST00000509101 CHAF1AQ13111 956 aaPredicted RBP20.23■□□□□ 0.83
CXCL1-202ENST00000509101 ARHGEF6Q15052 776 aa20.23■□□□□ 0.83
CXCL1-202ENST00000509101 NCBP3Q53F19 620 aaKnown RBP20.23■□□□□ 0.83
CXCL1-202ENST00000509101 MYCP01106 439 aaPredicted RBP20.22■□□□□ 0.83
CXCL1-202ENST00000509101 CACNB3P54284 484 aa20.22■□□□□ 0.83
CXCL1-202ENST00000509101 SLC4A8Q2Y0W8 1093 aa20.22■□□□□ 0.83
CXCL1-202ENST00000509101 SLC4A10Q6U841 1118 aa20.22■□□□□ 0.83
CXCL1-202ENST00000509101 NBPF11Q86T75 865 aa20.22■□□□□ 0.83
CXCL1-202ENST00000509101 SUCLG2Q96I99 432 aa20.22■□□□□ 0.83
CXCL1-202ENST00000509101 SPDYE5A6NIY4 337 aa20.21■□□□□ 0.83
CXCL1-202ENST00000509101 VPS37DQ86XT2 251 aa20.21■□□□□ 0.83
CXCL1-202ENST00000509101 WDR63Q8IWG1 891 aa20.21■□□□□ 0.83
CXCL1-202ENST00000509101 SNCAIPQ9Y6H5 919 aa20.21■□□□□ 0.83
CXCL1-202ENST00000509101 AK9Q5TCS8 1911 aa20.2■□□□□ 0.82
CXCL1-202ENST00000509101 ALDH1L1O75891 902 aa20.2■□□□□ 0.82
CXCL1-202ENST00000509101 FXR1P51114 621 aaKnown RBP eCLIP20.2■□□□□ 0.82
CXCL1-202ENST00000509101 WRNIP1Q96S55 665 aa20.2■□□□□ 0.82
CXCL1-202ENST00000509101 ARHGAP39Q9C0H5 1083 aa20.2■□□□□ 0.82
CXCL1-202ENST00000509101 SRCIN1Q9C0H9 1055 aa20.2■□□□□ 0.82
CXCL1-202ENST00000509101 MROH5Q6ZUA9 1318 aa20.2■□□□□ 0.82
CXCL1-202ENST00000509101 FRAT2O75474 233 aaPredicted RBP20.19■□□□□ 0.82
CXCL1-202ENST00000509101 SH3TC2Q8TF17 1288 aa20.19■□□□□ 0.82
CXCL1-202ENST00000509101 TEKT1Q969V4 418 aa20.19■□□□□ 0.82
CXCL1-202ENST00000509101 KAZALD1Q96I82 304 aa20.19■□□□□ 0.82
CXCL1-202ENST00000509101 SPINK5Q9NQ38 1064 aaPredicted RBP20.19■□□□□ 0.82
CXCL1-202ENST00000509101 RIPOR2Q9Y4F9 1068 aa20.19■□□□□ 0.82
CXCL1-202ENST00000509101 TRIOBPQ9H2D6 2365 aa20.19■□□□□ 0.82
CXCL1-202ENST00000509101 WDHD1O75717 1129 aaPredicted RBP20.18■□□□□ 0.82
CXCL1-202ENST00000509101 CETPP11597 493 aa20.18■□□□□ 0.82
CXCL1-202ENST00000509101 FBXO33Q7Z6M2 555 aa20.18■□□□□ 0.82
CXCL1-202ENST00000509101 ZKSCAN4Q969J2 545 aaPredicted RBP20.18■□□□□ 0.82
CXCL1-202ENST00000509101 MRS2Q9HD23 443 aa20.18■□□□□ 0.82
CXCL1-202ENST00000509101 TMOD2Q9NZR1 351 aa20.18■□□□□ 0.82
CXCL1-202ENST00000509101 BTBD19C9JJ37 291 aa20.17■□□□□ 0.82
CXCL1-202ENST00000509101 TLR2O60603 784 aa20.17■□□□□ 0.82
CXCL1-202ENST00000509101 ECM2O94769 699 aaPredicted RBP20.17■□□□□ 0.82
CXCL1-202ENST00000509101 NBPF7P0C2Y1 421 aaPredicted RBP20.17■□□□□ 0.82
CXCL1-202ENST00000509101 LACTBP83111 547 aaPredicted RBP20.17■□□□□ 0.82
CXCL1-202ENST00000509101 HDLBPQ00341 1268 aaKnown RBP20.17■□□□□ 0.82
CXCL1-202ENST00000509101 KIF22Q14807 665 aa20.17■□□□□ 0.82
CXCL1-202ENST00000509101 LRRC24Q50LG9 513 aa20.17■□□□□ 0.82
CXCL1-202ENST00000509101 METTL24Q5JXM2 366 aa20.17■□□□□ 0.82
CXCL1-202ENST00000509101 ERO1BQ86YB8 467 aa20.17■□□□□ 0.82
CXCL1-202ENST00000509101 TBC1D22AQ8WUA7 517 aa20.17■□□□□ 0.82
CXCL1-202ENST00000509101 COLQQ9Y215 455 aaPredicted RBP20.17■□□□□ 0.82
CXCL1-202ENST00000509101 IRF6O14896 467 aa20.16■□□□□ 0.82
CXCL1-202ENST00000509101 SNAPC2Q13487 334 aa20.16■□□□□ 0.82
CXCL1-202ENST00000509101 CAVIN4Q5BKX8 364 aa20.16■□□□□ 0.82
CXCL1-202ENST00000509101 BICC1Q9H694 974 aaKnown RBP20.16■□□□□ 0.82
CXCL1-202ENST00000509101 RPAP1Q9BWH6 1393 aaPredicted RBP20.16■□□□□ 0.82
CXCL1-202ENST00000509101 PPIL2Q13356 520 aa20.15■□□□□ 0.82
CXCL1-202ENST00000509101 ZDHHC15Q96MV8 337 aa20.15■□□□□ 0.82
CXCL1-202ENST00000509101 ZCCHC17Q9NP64 241 aaKnown RBP20.15■□□□□ 0.82
CXCL1-202ENST00000509101 MGAMO43451 1857 aa20.15■□□□□ 0.82
CXCL1-202ENST00000509101 DOCK2Q92608 1830 aa20.14■□□□□ 0.81
CXCL1-202ENST00000509101 MAST3O60307 1309 aa20.14■□□□□ 0.81
CXCL1-202ENST00000509101 FAM83AQ86UY5 434 aa20.14■□□□□ 0.81
CXCL1-202ENST00000509101 VGLL2Q8N8G2 317 aa20.14■□□□□ 0.81
CXCL1-202ENST00000509101 HOOK2Q96ED9 719 aa20.14■□□□□ 0.81
CXCL1-202ENST00000509101 UTYO14607 1347 aa20.13■□□□□ 0.81
CXCL1-202ENST00000509101 DCAF15Q66K64 600 aa20.13■□□□□ 0.81
CXCL1-202ENST00000509101 ANKRD44Q8N8A2 993 aa20.13■□□□□ 0.81
CXCL1-202ENST00000509101 H0YGN5 161 aa20.12■□□□□ 0.81
CXCL1-202ENST00000509101 PDE8BO95263 885 aa20.12■□□□□ 0.81
CXCL1-202ENST00000509101 BCAMP50895 628 aa20.12■□□□□ 0.81
CXCL1-202ENST00000509101 RABL6Q3YEC7 729 aaPredicted RBP20.12■□□□□ 0.81
CXCL1-202ENST00000509101 APOBEC3HQ6NTF7 200 aaKnown RBP20.12■□□□□ 0.81
CXCL1-202ENST00000509101 KLHDC4Q8TBB5 520 aa20.12■□□□□ 0.81
CXCL1-202ENST00000509101 GNRH1P01148 92 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms