RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 TBC1D10BQ4KMP7 808 aaPredicted RBP11.16□□□□□ -0.62
NUP54-207ENST00000508583 RBM26Q5T8P6 1007 aaKnown RBP11.16□□□□□ -0.62
NUP54-207ENST00000508583 SAMD7Q7Z3H4 446 aa11.16□□□□□ -0.62
NUP54-207ENST00000508583 DZIP1Q86YF9 867 aaKnown RBP11.16□□□□□ -0.62
NUP54-207ENST00000508583 SULF1Q8IWU6 871 aa11.16□□□□□ -0.62
NUP54-207ENST00000508583 CERS5Q8N5B7 392 aa11.16□□□□□ -0.62
NUP54-207ENST00000508583 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.16□□□□□ -0.62
NUP54-207ENST00000508583 CCDC8Q9H0W5 538 aaPredicted RBP11.16□□□□□ -0.62
NUP54-207ENST00000508583 JAG2Q9Y219 1238 aa11.16□□□□□ -0.62
NUP54-207ENST00000508583 F8W031 263 aaPredicted RBP11.15□□□□□ -0.62
NUP54-207ENST00000508583 GSTO1P78417 241 aa11.15□□□□□ -0.62
NUP54-207ENST00000508583 TTF1Q15361 905 aaPredicted RBP11.15□□□□□ -0.62
NUP54-207ENST00000508583 ERICH6Q7L0X2 663 aa11.15□□□□□ -0.62
NUP54-207ENST00000508583 CDC37L1Q7L3B6 337 aa11.15□□□□□ -0.62
NUP54-207ENST00000508583 APOBEC3FQ8IUX4 373 aaKnown RBP11.15□□□□□ -0.62
NUP54-207ENST00000508583 TRPM4Q8TD43 1214 aa11.15□□□□□ -0.62
NUP54-207ENST00000508583 TMOD2Q9NZR1 351 aa11.15□□□□□ -0.62
NUP54-207ENST00000508583 ABCF2Q9UG63 623 aa11.15□□□□□ -0.62
NUP54-207ENST00000508583 PGAP2Q9UHJ9 254 aa11.15□□□□□ -0.62
NUP54-207ENST00000508583 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.15□□□□□ -0.62
NUP54-207ENST00000508583 COL1A1P02452 1464 aaPredicted RBP11.14□□□□□ -0.63
NUP54-207ENST00000508583 SPDYE2BA6NHP3 402 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 WNT10BO00744 389 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 ERC2O15083 957 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 SPDYE6P0CI01 402 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 MCAMP43121 646 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 CRKP46108 304 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 IRX6P78412 446 aaPredicted RBP11.14□□□□□ -0.63
NUP54-207ENST00000508583 TNFAIP1Q13829 316 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 SCARF1Q14162 830 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 CFAP100Q494V2 611 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 HHIPL2Q6UWX4 724 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 CNTROBQ8N137 903 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 BCL11AQ9H165 835 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 TLR7Q9NYK1 1049 aaKnown RBP11.14□□□□□ -0.63
NUP54-207ENST00000508583 GGA3Q9NZ52 723 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 HMG20BQ9P0W2 317 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 LRP2BPQ9P2M1 347 aa11.14□□□□□ -0.63
NUP54-207ENST00000508583 EGFRP00533 1210 aa11.13□□□□□ -0.63
NUP54-207ENST00000508583 LDHCP07864 332 aa11.13□□□□□ -0.63
NUP54-207ENST00000508583 ATP5JP18859 108 aa11.13□□□□□ -0.63
NUP54-207ENST00000508583 ANKRD45Q5TZF3 282 aa11.13□□□□□ -0.63
NUP54-207ENST00000508583 MAP1SQ66K74 1059 aaPredicted RBP11.13□□□□□ -0.63
NUP54-207ENST00000508583 KRT26Q7Z3Y9 468 aa11.13□□□□□ -0.63
NUP54-207ENST00000508583 SMC5Q8IY18 1101 aa11.13□□□□□ -0.63
NUP54-207ENST00000508583 ZDHHC15Q96MV8 337 aa11.13□□□□□ -0.63
NUP54-207ENST00000508583 NOL10Q9BSC4 688 aaKnown RBP11.13□□□□□ -0.63
NUP54-207ENST00000508583 ECHDC1Q9NTX5 307 aa11.13□□□□□ -0.63
NUP54-207ENST00000508583 PPP2R3BQ9Y5P8 575 aa11.13□□□□□ -0.63
NUP54-207ENST00000508583 TTC41PQ6P2S7 1318 aa11.12□□□□□ -0.63
NUP54-207ENST00000508583 ECM29Q5VYK3 1845 aa11.12□□□□□ -0.63
NUP54-207ENST00000508583 MAP4K4O95819 1239 aaPredicted RBP11.12□□□□□ -0.63
NUP54-207ENST00000508583 PRDX5P30044 214 aa11.12□□□□□ -0.63
NUP54-207ENST00000508583 TNNI2P48788 182 aa11.12□□□□□ -0.63
NUP54-207ENST00000508583 HIRAP54198 1017 aaPredicted RBP11.12□□□□□ -0.63
NUP54-207ENST00000508583 MAP3K12Q12852 859 aa11.12□□□□□ -0.63
NUP54-207ENST00000508583 LRRFIP1Q32MZ4 808 aaKnown RBP11.12□□□□□ -0.63
NUP54-207ENST00000508583 ANGEL2Q5VTE6 544 aaKnown RBP11.12□□□□□ -0.63
NUP54-207ENST00000508583 CERS3Q8IU89 383 aa11.12□□□□□ -0.63
NUP54-207ENST00000508583 ZBED3Q96IU2 234 aaPredicted RBP11.12□□□□□ -0.63
NUP54-207ENST00000508583 RAI14Q9P0K7 980 aa11.12□□□□□ -0.63
NUP54-207ENST00000508583 AKAP11Q9UKA4 1901 aa11.11□□□□□ -0.63
NUP54-207ENST00000508583 SMARCA5O60264 1052 aaPredicted RBP11.11□□□□□ -0.63
NUP54-207ENST00000508583 GLRX3O76003 335 aaKnown RBP11.11□□□□□ -0.63
NUP54-207ENST00000508583 NF2P35240 595 aa11.11□□□□□ -0.63
NUP54-207ENST00000508583 APLP1P51693 650 aa11.11□□□□□ -0.63
NUP54-207ENST00000508583 NBPF9Q3BBW0 867 aa11.11□□□□□ -0.63
NUP54-207ENST00000508583 FAM163AQ96GL9 167 aaPredicted RBP11.11□□□□□ -0.63
NUP54-207ENST00000508583 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.11□□□□□ -0.63
NUP54-207ENST00000508583 MAST2Q6P0Q8 1798 aa11.11□□□□□ -0.63
NUP54-207ENST00000508583 IDH1O75874 414 aaKnown RBP11.1□□□□□ -0.63
NUP54-207ENST00000508583 BAG3O95817 575 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 CYP2E1P05181 493 aaPredicted RBP11.1□□□□□ -0.63
NUP54-207ENST00000508583 PLCG2P16885 1265 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 HSPA6P17066 643 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 MX1P20591 662 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 ZAP70P43403 619 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 SPDYE2Q495Y8 402 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 FKBP1CQ5VVH2 108 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 ERICH6BQ5W0A0 696 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 NAA16Q6N069 864 aaPredicted RBP11.1□□□□□ -0.63
NUP54-207ENST00000508583 PI16Q6UXB8 463 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 HOOK2Q96ED9 719 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 DNAJC2Q99543 621 aaKnown RBP11.1□□□□□ -0.63
NUP54-207ENST00000508583 HAUS7Q99871 368 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 SNRKQ9NRH2 765 aa11.1□□□□□ -0.63
NUP54-207ENST00000508583 MROH7-TTC4A0A0A0MT08 1334 aa11.09□□□□□ -0.63
NUP54-207ENST00000508583 GAKO14976 1311 aa11.09□□□□□ -0.63
NUP54-207ENST00000508583 ASTN2O75129 1339 aaPredicted RBP11.09□□□□□ -0.63
NUP54-207ENST00000508583 PASKQ96RG2 1323 aa11.09□□□□□ -0.63
NUP54-207ENST00000508583 MYH2Q9UKX2 1941 aa11.09□□□□□ -0.63
NUP54-207ENST00000508583 TRPM7Q96QT4 1865 aa11.09□□□□□ -0.63
NUP54-207ENST00000508583 ITGBL1O95965 494 aaPredicted RBP11.09□□□□□ -0.63
NUP54-207ENST00000508583 NUCB1Q02818 461 aa11.09□□□□□ -0.63
NUP54-207ENST00000508583 MECOMQ03112 1051 aa11.09□□□□□ -0.63
NUP54-207ENST00000508583 ZSCAN25Q6NSZ9 544 aa11.09□□□□□ -0.63
NUP54-207ENST00000508583 USP48Q86UV5 1035 aa11.09□□□□□ -0.63
NUP54-207ENST00000508583 CHD1LQ86WJ1 897 aa11.09□□□□□ -0.63
NUP54-207ENST00000508583 NSUN4Q96CB9 384 aaKnown RBP11.09□□□□□ -0.63
NUP54-207ENST00000508583 PRMT6Q96LA8 375 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms