RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CAPN10Q9HC96 672 aa6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 OSGEPQ9NPF4 335 aa6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 INPP5FQ9Y2H2 1132 aa6.47□□□□□ -1.37
HMGB1P28-201ENST00000507778 FSCN2O14926 492 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 NID1P14543 1247 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 ARNTP27540 789 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 EIF4A3P38919 411 aaKnown RBP6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 GSTM4Q03013 218 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 LRRC14Q15048 493 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 PCNX4Q63HM2 1172 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 ZNF385CQ66K41 422 aaPredicted RBP6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 AGMOQ6ZNB7 445 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 SULF2Q8IWU5 870 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 DMRTC2Q8IXT2 367 aaPredicted RBP6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 SVOPQ8N4V2 548 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 SPON2Q9BUD6 331 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 EMILIN2Q9BXX0 1053 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 CYP8B1Q9UNU6 501 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 TLR6Q9Y2C9 796 aa6.46□□□□□ -1.38
HMGB1P28-201ENST00000507778 PF4P02776 101 aa6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 BMP6P22004 513 aa6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 TNNI2P48788 182 aa6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 DGKGP49619 791 aa6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 AP3B2Q13367 1082 aa6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 CAMK2GQ13555 558 aaPredicted RBP6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 COL9A3Q14050 684 aaPredicted RBP6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 HGSNATQ68CP4 663 aa6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 MAP4K3Q8IVH8 894 aa6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 KLHL23Q8NBE8 558 aa6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 CBX8Q9HC52 389 aa6.45□□□□□ -1.38
HMGB1P28-201ENST00000507778 CYP11A1P05108 521 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 TFE3P19532 575 aaPredicted RBP6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 LMNB2Q03252 620 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 TRAPPC3LQ5T215 181 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 ILDR2Q71H61 639 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 VPS37DQ86XT2 251 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 KIAA0825Q8IV33 1275 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 SLC43A3Q8NBI5 491 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 STK35Q8TDR2 534 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 ZNF296Q8WUU4 475 aaPredicted RBP6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 RHOVQ96L33 236 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 TINF2Q9BSI4 451 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 CARD10Q9BWT7 1032 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 ADAMTS1Q9UHI8 967 aa6.44□□□□□ -1.38
HMGB1P28-201ENST00000507778 HOXB4P17483 251 aaPredicted RBP6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 FAM160A1Q05DH4 1040 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 PAK2Q13177 524 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 SUZ12Q15022 739 aaKnown RBP6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 SETDB1Q15047 1291 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 SNAP47Q5SQN1 464 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 RASIP1Q5U651 963 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 LLGL2Q6P1M3 1020 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 FBXL19Q6PCT2 694 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 DTWD1Q8N5C7 304 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 GOLM1Q8NBJ4 401 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 GRIN3AQ8TCU5 1115 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 KLHDC7BQ96G42 594 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 MIR1-1HGQ9H1L0 117 aa6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 SUPT16HQ9Y5B9 1047 aaKnown RBP6.43□□□□□ -1.38
HMGB1P28-201ENST00000507778 ARHGEF15O94989 841 aa6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 GSTP1P09211 210 aaKnown RBP6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 POU4F3Q15319 338 aa6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 DIEXFQ68CQ4 756 aaKnown RBP6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 PDZD3Q86UT5 571 aa6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 CCDC84Q86UT8 332 aaPredicted RBP6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 TRIM42Q8IWZ5 723 aa6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 DCAF11Q8TEB1 546 aa6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 SREK1Q8WXA9 508 aaKnown RBP6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 GPRASP2Q96D09 838 aa6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 CORO1BQ9BR76 489 aa6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 KCNQ5Q9NR82 932 aa6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 USP35Q9P2H5 1018 aa6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 PCDHB5Q9Y5E4 795 aa6.42□□□□□ -1.38
HMGB1P28-201ENST00000507778 PIK3R2O00459 728 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 GREM1O60565 184 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 GARTP22102 1010 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 MAOBP27338 520 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 GJA8P48165 433 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 SNRPNP63162 240 aaKnown RBP6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 ARID5AQ03989 594 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 ZNF252P-AS1Q0IIN9 211 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 SF3A1Q15459 793 aaKnown RBP6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 MAP1SQ66K74 1059 aaPredicted RBP6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 SCARA3Q6AZY7 606 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 LINC00114Q6XXX2 140 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 GALNT11Q8NCW6 608 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 JARID2Q92833 1246 aaPredicted RBP6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 KCNB2Q92953 911 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 EAF1Q96JC9 268 aaPredicted RBP6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 SPATA32Q96LK8 384 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 DRC1Q96MC2 740 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 NT5C1AQ9BXI3 368 aa6.41□□□□□ -1.38
HMGB1P28-201ENST00000507778 SPDYE3A6NKU9 549 aa6.4□□□□□ -1.38
HMGB1P28-201ENST00000507778 TM4SF5O14894 197 aa6.4□□□□□ -1.38
HMGB1P28-201ENST00000507778 DEAF1O75398 565 aaPredicted RBP6.4□□□□□ -1.38
HMGB1P28-201ENST00000507778 CD68P34810 354 aaPredicted RBP6.4□□□□□ -1.38
HMGB1P28-201ENST00000507778 NLRP12P59046 1061 aa6.4□□□□□ -1.38
HMGB1P28-201ENST00000507778 RAC1P63000 192 aa6.4□□□□□ -1.38
HMGB1P28-201ENST00000507778 FAM196AQ6ZSG2 479 aa6.4□□□□□ -1.38
HMGB1P28-201ENST00000507778 PLVAPQ9BX97 442 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms