RNA–Protein interactions for RNA: ENST00000507162.1

VCAN-207, Transcript of versican, humanhuman

TSL 3

Gene VCAN, Length 766 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-207ENST00000507162 PRMT6Q96LA8 375 aaPredicted RBP9.46□□□□□ -0.9
VCAN-207ENST00000507162 ISCA1Q9BUE6 129 aa9.46□□□□□ -0.9
VCAN-207ENST00000507162 TSPYL4Q9UJ04 414 aa9.46□□□□□ -0.9
VCAN-207ENST00000507162 TAOK2Q9UL54 1235 aa9.46□□□□□ -0.9
VCAN-207ENST00000507162 ZSWIM8A7E2V4 1837 aa9.46□□□□□ -0.9
VCAN-207ENST00000507162 ZNF804BA4D1E1 1349 aa9.46□□□□□ -0.9
VCAN-207ENST00000507162 PIEZO1Q92508 2521 aa9.45□□□□□ -0.9
VCAN-207ENST00000507162 NEFMP07197 916 aa9.45□□□□□ -0.9
VCAN-207ENST00000507162 FCGRTP55899 365 aa9.45□□□□□ -0.9
VCAN-207ENST00000507162 MDM2Q00987 491 aaPredicted RBP9.45□□□□□ -0.9
VCAN-207ENST00000507162 SNAPC2Q13487 334 aa9.45□□□□□ -0.9
VCAN-207ENST00000507162 PLBD2Q8NHP8 589 aa9.45□□□□□ -0.9
VCAN-207ENST00000507162 MYLIPQ8WY64 445 aa9.45□□□□□ -0.9
VCAN-207ENST00000507162 FOXD4L1Q9NU39 408 aa9.45□□□□□ -0.9
VCAN-207ENST00000507162 COL1A1P02452 1464 aaPredicted RBP9.45□□□□□ -0.9
VCAN-207ENST00000507162 ZNF646O15015 1829 aaPredicted RBP9.45□□□□□ -0.9
VCAN-207ENST00000507162 PDHXO00330 501 aa9.44□□□□□ -0.9
VCAN-207ENST00000507162 HSP90B1P14625 803 aaKnown RBP9.44□□□□□ -0.9
VCAN-207ENST00000507162 CAPN2P17655 700 aa9.44□□□□□ -0.9
VCAN-207ENST00000507162 CCT4P50991 539 aaKnown RBP9.44□□□□□ -0.9
VCAN-207ENST00000507162 TJAP1Q5JTD0 557 aa9.44□□□□□ -0.9
VCAN-207ENST00000507162 SEMA6BQ9H3T3 888 aa9.44□□□□□ -0.9
VCAN-207ENST00000507162 ZCCHC17Q9NP64 241 aaKnown RBP9.44□□□□□ -0.9
VCAN-207ENST00000507162 RTN4Q9NQC3 1192 aaKnown RBP9.44□□□□□ -0.9
VCAN-207ENST00000507162 MINPP1Q9UNW1 487 aa9.44□□□□□ -0.9
VCAN-207ENST00000507162 AOX1Q06278 1338 aa9.44□□□□□ -0.9
VCAN-207ENST00000507162 COL3A1P02461 1466 aaPredicted RBP9.44□□□□□ -0.9
VCAN-207ENST00000507162 LAMB4A4D0S4 1761 aa9.44□□□□□ -0.9
VCAN-207ENST00000507162 MED23Q9ULK4 1368 aa9.43□□□□□ -0.9
VCAN-207ENST00000507162 SPDYE2BA6NHP3 402 aa9.43□□□□□ -0.9
VCAN-207ENST00000507162 IRF6O14896 467 aa9.43□□□□□ -0.9
VCAN-207ENST00000507162 SPDYE6P0CI01 402 aa9.43□□□□□ -0.9
VCAN-207ENST00000507162 FLT3LGP49771 235 aa9.43□□□□□ -0.9
VCAN-207ENST00000507162 MTMR14Q8NCE2 650 aa9.43□□□□□ -0.9
VCAN-207ENST00000507162 NBPF3Q9H094 633 aa9.43□□□□□ -0.9
VCAN-207ENST00000507162 CRISPLD2Q9H0B8 497 aa9.43□□□□□ -0.9
VCAN-207ENST00000507162 BDP1A6H8Y1 2624 aa9.43□□□□□ -0.9
VCAN-207ENST00000507162 TCP10L2B9ZVM9 353 aa9.42□□□□□ -0.9
VCAN-207ENST00000507162 PDE8AO60658 829 aa9.42□□□□□ -0.9
VCAN-207ENST00000507162 FOSL2P15408 326 aa9.42□□□□□ -0.9
VCAN-207ENST00000507162 TNFAIP1Q13829 316 aa9.42□□□□□ -0.9
VCAN-207ENST00000507162 ERO1BQ86YB8 467 aa9.42□□□□□ -0.9
VCAN-207ENST00000507162 CDAN1Q8IWY9 1227 aa9.42□□□□□ -0.9
VCAN-207ENST00000507162 CERS5Q8N5B7 392 aa9.42□□□□□ -0.9
VCAN-207ENST00000507162 ZBTB38Q8NAP3 1195 aaPredicted RBP9.42□□□□□ -0.9
VCAN-207ENST00000507162 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.42□□□□□ -0.9
VCAN-207ENST00000507162 ZKSCAN4Q969J2 545 aaPredicted RBP9.42□□□□□ -0.9
VCAN-207ENST00000507162 CDC5LQ99459 802 aaKnown RBP9.42□□□□□ -0.9
VCAN-207ENST00000507162 C11orf49Q9H6J7 331 aa9.42□□□□□ -0.9
VCAN-207ENST00000507162 ZNF70Q9UC06 446 aaPredicted RBP9.42□□□□□ -0.9
VCAN-207ENST00000507162 MUC3AQ02505 3323 aa9.41□□□□□ -0.9
VCAN-207ENST00000507162 FAM205AQ6ZU69 1335 aa9.41□□□□□ -0.9
VCAN-207ENST00000507162 PSME4Q14997 1843 aa9.41□□□□□ -0.9
VCAN-207ENST00000507162 SPDYE5A6NIY4 337 aa9.41□□□□□ -0.9
VCAN-207ENST00000507162 PER1O15534 1290 aaPredicted RBP9.41□□□□□ -0.9
VCAN-207ENST00000507162 KLRK1P26718 216 aa9.41□□□□□ -0.9
VCAN-207ENST00000507162 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.41□□□□□ -0.9
VCAN-207ENST00000507162 TMEM39BQ9GZU3 492 aa9.41□□□□□ -0.9
VCAN-207ENST00000507162 TDRD3Q9H7E2 651 aaKnown RBP9.41□□□□□ -0.9
VCAN-207ENST00000507162 CD209Q9NNX6 404 aa9.41□□□□□ -0.9
VCAN-207ENST00000507162 PAK6Q9NQU5 681 aaPredicted RBP9.41□□□□□ -0.9
VCAN-207ENST00000507162 BSDC1Q9NW68 430 aaPredicted RBP9.41□□□□□ -0.9
VCAN-207ENST00000507162 CHPF2Q9P2E5 772 aa9.41□□□□□ -0.9
VCAN-207ENST00000507162 JAG2Q9Y219 1238 aa9.41□□□□□ -0.9
VCAN-207ENST00000507162 LEMD3Q9Y2U8 911 aa9.41□□□□□ -0.9
VCAN-207ENST00000507162 KCNJ4P48050 445 aa9.4□□□□□ -0.9
VCAN-207ENST00000507162 TRIM28Q13263 835 aaKnown RBP9.4□□□□□ -0.9
VCAN-207ENST00000507162 RIC3Q7Z5B4 369 aa9.4□□□□□ -0.9
VCAN-207ENST00000507162 ANKRD23Q86SG2 305 aa9.4□□□□□ -0.9
VCAN-207ENST00000507162 PXYLP1Q8TE99 480 aa9.4□□□□□ -0.9
VCAN-207ENST00000507162 LBHD1Q9BQE6 289 aaPredicted RBP9.4□□□□□ -0.9
VCAN-207ENST00000507162 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.4□□□□□ -0.9
VCAN-207ENST00000507162 SNCAIPQ9Y6H5 919 aa9.4□□□□□ -0.9
VCAN-207ENST00000507162 ADGRA2Q96PE1 1338 aa9.39□□□□□ -0.91
VCAN-207ENST00000507162 TNPO2O14787 897 aaKnown RBP9.39□□□□□ -0.91
VCAN-207ENST00000507162 CYP2C8P10632 490 aa9.39□□□□□ -0.91
VCAN-207ENST00000507162 PPIL2Q13356 520 aa9.39□□□□□ -0.91
VCAN-207ENST00000507162 ANKLE1Q8NAG6 615 aa9.39□□□□□ -0.91
VCAN-207ENST00000507162 TEPSINQ96N21 525 aa9.39□□□□□ -0.91
VCAN-207ENST00000507162 WRNIP1Q96S55 665 aa9.39□□□□□ -0.91
VCAN-207ENST00000507162 ALPK3Q96L96 1907 aa9.39□□□□□ -0.91
VCAN-207ENST00000507162 PCCAP05165 728 aaPredicted RBP9.38□□□□□ -0.91
VCAN-207ENST00000507162 BCRP11274 1271 aa9.38□□□□□ -0.91
VCAN-207ENST00000507162 TNNI2P48788 182 aa9.38□□□□□ -0.91
VCAN-207ENST00000507162 NFE2L2Q16236 605 aa9.38□□□□□ -0.91
VCAN-207ENST00000507162 KRT24Q2M2I5 525 aa9.38□□□□□ -0.91
VCAN-207ENST00000507162 SPDYE2Q495Y8 402 aa9.38□□□□□ -0.91
VCAN-207ENST00000507162 PPM1EQ8WY54 764 aa9.38□□□□□ -0.91
VCAN-207ENST00000507162 MYD88Q99836 296 aa9.38□□□□□ -0.91
VCAN-207ENST00000507162 IGHMBP2P38935 993 aaKnown RBP9.37□□□□□ -0.91
VCAN-207ENST00000507162 PPATQ06203 517 aa9.37□□□□□ -0.91
VCAN-207ENST00000507162 IRF5Q13568 498 aa9.37□□□□□ -0.91
VCAN-207ENST00000507162 SNX27Q96L92 541 aa9.37□□□□□ -0.91
VCAN-207ENST00000507162 PARK7Q99497 189 aaKnown RBP9.37□□□□□ -0.91
VCAN-207ENST00000507162 ANKRD2Q9GZV1 360 aa9.37□□□□□ -0.91
VCAN-207ENST00000507162 SNAP23O00161 211 aa9.36□□□□□ -0.91
VCAN-207ENST00000507162 LRRC26Q2I0M4 334 aa9.36□□□□□ -0.91
VCAN-207ENST00000507162 HDGFL1Q5TGJ6 251 aa9.36□□□□□ -0.91
VCAN-207ENST00000507162 MIGA2Q7L4E1 593 aa9.36□□□□□ -0.91
VCAN-207ENST00000507162 ALYREFQ86V81 257 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms