RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 RASA3Q14644 834 aa17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 DZIP1LQ8IYY4 767 aaKnown RBP17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 WDR66Q8TBY9 1149 aa17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 TEKT1Q969V4 418 aa17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 HOOK2Q96ED9 719 aa17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 CFHR5Q9BXR6 569 aa17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 GNL3LQ9NVN8 582 aaKnown RBP17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 TMOD2Q9NZR1 351 aa17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 CEP126Q9P2H0 1117 aa17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 ZNF70Q9UC06 446 aaPredicted RBP17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 ARAP2Q8WZ64 1704 aa17.98■□□□□ 0.47
HMGCS1-203ENST00000507004 IL15P40933 162 aaPredicted RBP17.97■□□□□ 0.47
HMGCS1-203ENST00000507004 CHAF1AQ13111 956 aaPredicted RBP17.97■□□□□ 0.47
HMGCS1-203ENST00000507004 PKN2Q16513 984 aaKnown RBP17.97■□□□□ 0.47
HMGCS1-203ENST00000507004 SPRYD7Q5W111 196 aa17.97■□□□□ 0.47
HMGCS1-203ENST00000507004 INTS3Q68E01 1043 aaKnown RBP17.97■□□□□ 0.47
HMGCS1-203ENST00000507004 ANKRD13AQ8IZ07 590 aa17.97■□□□□ 0.47
HMGCS1-203ENST00000507004 KLHDC4Q8TBB5 520 aa17.97■□□□□ 0.47
HMGCS1-203ENST00000507004 SEMA3EO15041 775 aa17.96■□□□□ 0.47
HMGCS1-203ENST00000507004 PRKG1Q13976 671 aa17.96■□□□□ 0.47
HMGCS1-203ENST00000507004 FKBP1CQ5VVH2 108 aa17.96■□□□□ 0.47
HMGCS1-203ENST00000507004 CTU1Q7Z7A3 348 aaKnown RBP17.96■□□□□ 0.47
HMGCS1-203ENST00000507004 CCDC85CA6NKD9 419 aa17.95■□□□□ 0.46
HMGCS1-203ENST00000507004 BCAMP50895 628 aa17.95■□□□□ 0.46
HMGCS1-203ENST00000507004 OTUD7BQ6GQQ9 843 aa17.95■□□□□ 0.46
HMGCS1-203ENST00000507004 HHIPL2Q6UWX4 724 aa17.95■□□□□ 0.46
HMGCS1-203ENST00000507004 ZDHHC15Q96MV8 337 aa17.95■□□□□ 0.46
HMGCS1-203ENST00000507004 TDRD3Q9H7E2 651 aaKnown RBP17.95■□□□□ 0.46
HMGCS1-203ENST00000507004 COPRSQ9NQ92 184 aa17.95■□□□□ 0.46
HMGCS1-203ENST00000507004 ATP2B3Q16720 1220 aa17.94■□□□□ 0.46
HMGCS1-203ENST00000507004 NBPF12Q5TAG4 269 aaPredicted RBP17.94■□□□□ 0.46
HMGCS1-203ENST00000507004 ATG9AQ7Z3C6 839 aa17.94■□□□□ 0.46
HMGCS1-203ENST00000507004 IQSEC3Q9UPP2 1182 aaPredicted RBP17.94■□□□□ 0.46
HMGCS1-203ENST00000507004 PCDHAC2Q9Y5I4 1007 aa17.94■□□□□ 0.46
HMGCS1-203ENST00000507004 LRRFIP2Q9Y608 721 aaKnown RBP17.94■□□□□ 0.46
HMGCS1-203ENST00000507004 FAM83AQ86UY5 434 aa17.93■□□□□ 0.46
HMGCS1-203ENST00000507004 ZGPATQ8N5A5 531 aaKnown RBP17.93■□□□□ 0.46
HMGCS1-203ENST00000507004 WNK4Q96J92 1243 aa17.93■□□□□ 0.46
HMGCS1-203ENST00000507004 USP2O75604 605 aaPredicted RBP17.92■□□□□ 0.46
HMGCS1-203ENST00000507004 RGS19P49795 217 aa17.92■□□□□ 0.46
HMGCS1-203ENST00000507004 MTX1Q13505 466 aa17.92■□□□□ 0.46
HMGCS1-203ENST00000507004 DENND2AQ9ULE3 1009 aa17.92■□□□□ 0.46
HMGCS1-203ENST00000507004 AKAP2Q9Y2D5 859 aa17.92■□□□□ 0.46
HMGCS1-203ENST00000507004 SSC5DA1L4H1 1573 aa17.91■□□□□ 0.46
HMGCS1-203ENST00000507004 GPR25O00155 361 aa17.91■□□□□ 0.46
HMGCS1-203ENST00000507004 ATF7IPQ6VMQ6 1270 aa17.91■□□□□ 0.46
HMGCS1-203ENST00000507004 MEIS3Q99687 375 aa17.91■□□□□ 0.46
HMGCS1-203ENST00000507004 SIL1Q9H173 461 aa17.91■□□□□ 0.46
HMGCS1-203ENST00000507004 SALL1Q9NSC2 1324 aa17.91■□□□□ 0.46
HMGCS1-203ENST00000507004 TCP10L2B9ZVM9 353 aa17.9■□□□□ 0.46
HMGCS1-203ENST00000507004 MKRN3Q13064 507 aaKnown RBP17.9■□□□□ 0.46
HMGCS1-203ENST00000507004 TEPSINQ96N21 525 aa17.9■□□□□ 0.46
HMGCS1-203ENST00000507004 CSADQ9Y600 493 aa17.9■□□□□ 0.46
HMGCS1-203ENST00000507004 RPAP1Q9BWH6 1393 aaPredicted RBP17.9■□□□□ 0.46
HMGCS1-203ENST00000507004 SRGAP3O43295 1099 aa17.89■□□□□ 0.45
HMGCS1-203ENST00000507004 FKTNO75072 461 aa17.89■□□□□ 0.45
HMGCS1-203ENST00000507004 TBC1D8O95759 1140 aa17.89■□□□□ 0.45
HMGCS1-203ENST00000507004 MAP3K9P80192 1104 aa17.89■□□□□ 0.45
HMGCS1-203ENST00000507004 DCAF15Q66K64 600 aa17.89■□□□□ 0.45
HMGCS1-203ENST00000507004 IFNL1Q8IU54 200 aa17.89■□□□□ 0.45
HMGCS1-203ENST00000507004 SLF2Q8IX21 1173 aa17.89■□□□□ 0.45
HMGCS1-203ENST00000507004 ZNF296Q8WUU4 475 aaPredicted RBP17.89■□□□□ 0.45
HMGCS1-203ENST00000507004 PDS5AQ29RF7 1337 aaKnown RBP17.89■□□□□ 0.45
HMGCS1-203ENST00000507004 TESPA1A2RU30 521 aaPredicted RBP17.88■□□□□ 0.45
HMGCS1-203ENST00000507004 WDHD1O75717 1129 aaPredicted RBP17.88■□□□□ 0.45
HMGCS1-203ENST00000507004 GNAI2P04899 355 aa17.88■□□□□ 0.45
HMGCS1-203ENST00000507004 LDHBP07195 334 aaKnown RBP17.88■□□□□ 0.45
HMGCS1-203ENST00000507004 APOBEC3HQ6NTF7 200 aaKnown RBP17.88■□□□□ 0.45
HMGCS1-203ENST00000507004 CLMNQ96JQ2 1002 aa17.88■□□□□ 0.45
HMGCS1-203ENST00000507004 AOX1Q06278 1338 aa17.88■□□□□ 0.45
HMGCS1-203ENST00000507004 TRIM27P14373 513 aa17.87■□□□□ 0.45
HMGCS1-203ENST00000507004 MLLT1Q03111 559 aaPredicted RBP17.87■□□□□ 0.45
HMGCS1-203ENST00000507004 MVPQ14764 893 aaKnown RBP17.87■□□□□ 0.45
HMGCS1-203ENST00000507004 GRIK5Q16478 980 aa17.87■□□□□ 0.45
HMGCS1-203ENST00000507004 ZKSCAN2Q63HK3 967 aa17.87■□□□□ 0.45
HMGCS1-203ENST00000507004 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.87■□□□□ 0.45
HMGCS1-203ENST00000507004 TMEM39BQ9GZU3 492 aa17.87■□□□□ 0.45
HMGCS1-203ENST00000507004 MYH13Q9UKX3 1938 aa17.87■□□□□ 0.45
HMGCS1-203ENST00000507004 LAMB1P07942 1786 aa17.86■□□□□ 0.45
HMGCS1-203ENST00000507004 SPTY2D1Q68D10 685 aaPredicted RBP17.86■□□□□ 0.45
HMGCS1-203ENST00000507004 FRAT1Q92837 279 aaPredicted RBP17.86■□□□□ 0.45
HMGCS1-203ENST00000507004 FZD1Q9UP38 647 aa17.86■□□□□ 0.45
HMGCS1-203ENST00000507004 GTF2A2P52657 109 aa17.85■□□□□ 0.45
HMGCS1-203ENST00000507004 HNRNPUQ00839 825 aaKnown RBP eCLIP17.85■□□□□ 0.45
HMGCS1-203ENST00000507004 DIEXFQ68CQ4 756 aaKnown RBP17.85■□□□□ 0.45
HMGCS1-203ENST00000507004 CCDC102BQ68D86 513 aa17.85■□□□□ 0.45
HMGCS1-203ENST00000507004 FAM151AQ8WW52 585 aa17.85■□□□□ 0.45
HMGCS1-203ENST00000507004 OPTNQ96CV9 577 aa17.85■□□□□ 0.45
HMGCS1-203ENST00000507004 PA2G4Q9UQ80 394 aaKnown RBP17.85■□□□□ 0.45
HMGCS1-203ENST00000507004 ARHGEF6Q15052 776 aa17.84■□□□□ 0.45
HMGCS1-203ENST00000507004 FBXO46Q6PJ61 603 aaPredicted RBP17.84■□□□□ 0.45
HMGCS1-203ENST00000507004 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.84■□□□□ 0.45
HMGCS1-203ENST00000507004 ERO1BQ86YB8 467 aa17.84■□□□□ 0.45
HMGCS1-203ENST00000507004 ERO1AQ96HE7 468 aa17.84■□□□□ 0.45
HMGCS1-203ENST00000507004 ZNF341Q9BYN7 854 aa17.84■□□□□ 0.45
HMGCS1-203ENST00000507004 ELP3Q9H9T3 547 aa17.84■□□□□ 0.45
HMGCS1-203ENST00000507004 ZCCHC17Q9NP64 241 aaKnown RBP17.84■□□□□ 0.45
HMGCS1-203ENST00000507004 DAGLAQ9Y4D2 1042 aa17.84■□□□□ 0.45
HMGCS1-203ENST00000507004 A0A1B0GUL7 405 aa17.83■□□□□ 0.44
HMGCS1-203ENST00000507004 SPDYE5A6NIY4 337 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms