RNA–Protein interactions for RNA: ENST00000498724.5

TNC-208, Transcript of tenascin C, human

TSL 2

Gene TNC, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNC-208	ENST00000498724	LLPH	Q9BRT6	129 aa	Known RBP	5.19	□□□□□ -1.58
TNC-208	ENST00000498724	CCDC8	Q9H0W5	538 aa	Predicted RBP	5.19	□□□□□ -1.58
TNC-208	ENST00000498724	BOLA2	Q9H3K6	86 aa		5.19	□□□□□ -1.58
TNC-208	ENST00000498724	SPON1	Q9HCB6	807 aa		5.19	□□□□□ -1.58
TNC-208	ENST00000498724	KCND1	Q9NSA2	647 aa		5.19	□□□□□ -1.58
TNC-208	ENST00000498724	TRMT1	Q9NXH9	659 aa	Known RBP	5.19	□□□□□ -1.58
TNC-208	ENST00000498724	IMPACT	Q9P2X3	320 aa		5.19	□□□□□ -1.58
TNC-208	ENST00000498724	DBF4	Q9UBU7	674 aa	Predicted RBP	5.19	□□□□□ -1.58
TNC-208	ENST00000498724	AXIN2	Q9Y2T1	843 aa		5.19	□□□□□ -1.58
TNC-208	ENST00000498724	THRAP3	Q9Y2W1	955 aa	Known RBP	5.19	□□□□□ -1.58
TNC-208	ENST00000498724	KDM3B	Q7LBC6	1761 aa		5.19	□□□□□ -1.58
TNC-208	ENST00000498724	NCAPD2	Q15021	1401 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	BTBD11	A6QL63	1104 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	GRM8	O00222	908 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	EXOC5	O00471	708 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	CCP110	O43303	1012 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	KCNQ3	O43525	872 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	TAF5L	O75529	589 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	SASH1	O94885	1247 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	SMC2	O95347	1197 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	TUBB4A	P04350	444 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	NUDT7	P0C024	238 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	CSB-PGBD3	P0DP91	1061 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	CEBPZ	Q03701	1054 aa	Known RBP	5.18	□□□□□ -1.58
TNC-208	ENST00000498724	FAM160A1	Q05DH4	1040 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	BMS1	Q14692	1282 aa	Known RBP	5.18	□□□□□ -1.58
TNC-208	ENST00000498724	TERF2	Q15554	542 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	PLEKHO1	Q53GL0	409 aa	Predicted RBP	5.18	□□□□□ -1.58
TNC-208	ENST00000498724	ZNF530	Q6P9A1	599 aa	Predicted RBP	5.18	□□□□□ -1.58
TNC-208	ENST00000498724	FBXO38	Q6PIJ6	1188 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724		Q6ZUG5	572 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	AOPEP	Q8N6M6	819 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	ZNF454	Q8N9F8	522 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	LINS1	Q8NG48	757 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	EAF2	Q96CJ1	260 aa	Predicted RBP	5.18	□□□□□ -1.58
TNC-208	ENST00000498724	SUCLG2	Q96I99	432 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	OSBPL5	Q9H0X9	879 aa	Predicted RBP	5.18	□□□□□ -1.58
TNC-208	ENST00000498724	GOLPH3L	Q9H4A5	285 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	ARGLU1	Q9NWB6	273 aa	Predicted RBP	5.18	□□□□□ -1.58
TNC-208	ENST00000498724	TLR7	Q9NYK1	1049 aa	Known RBP	5.18	□□□□□ -1.58
TNC-208	ENST00000498724	CALCOCO1	Q9P1Z2	691 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	5.18	□□□□□ -1.58
TNC-208	ENST00000498724	RCOR1	Q9UKL0	485 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	USP16	Q9Y5T5	823 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724		V9GYY5	206 aa	Predicted RBP	5.18	□□□□□ -1.58
TNC-208	ENST00000498724	LRP5	O75197	1615 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	MRC1	P22897	1456 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	THSD7A	Q9UPZ6	1657 aa		5.18	□□□□□ -1.58
TNC-208	ENST00000498724	DISP2	A7MBM2	1401 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	PTPDC1	A2A3K4	754 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	ERICH4	A6NGS2	130 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	PLSCR1	O15162	318 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	PFKFB2	O60825	505 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	ZBTB7A	O95365	584 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	HMGB1	P09429	215 aa	Known RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	CDK11B	P21127	795 aa	Known RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	SFPQ	P23246	707 aa	Known RBP eCLIP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	MLLT3	P42568	568 aa	Predicted RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	ME1	P48163	572 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	SCRN1	Q12765	414 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	HIC1	Q14526	733 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	SF3A1	Q15459	793 aa	Known RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	CWF19L2	Q2TBE0	894 aa	Known RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	AKAP4	Q5JQC9	854 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	C1orf141	Q5JVX7	400 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	USPL1	Q5W0Q7	1092 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	TMC6	Q7Z403	805 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	ZNF589	Q86UQ0	364 aa	Predicted RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	DHX40	Q8IX18	779 aa	Known RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	KRI1	Q8N9T8	703 aa	Known RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	MARCH10	Q8NA82	808 aa	Predicted RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	NSUN7	Q8NE18	718 aa	Known RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	SMARCC2	Q8TAQ2	1214 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	MRPS27	Q92552	414 aa	Known RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	PPP1R13B	Q96KQ4	1090 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	TIGD1	Q96MW7	591 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	NOL10	Q9BSC4	688 aa	Known RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	PDGFD	Q9GZP0	370 aa	Predicted RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	SIL1	Q9H173	461 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	BICC1	Q9H694	974 aa	Known RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	FAM53C	Q9NYF3	392 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	NAP1L2	Q9ULW6	460 aa	Predicted RBP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	5.17	□□□□□ -1.58
TNC-208	ENST00000498724	TAF6L	Q9Y6J9	622 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	USP54	Q70EL1	1684 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	UTY	O14607	1347 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	ERBB3	P21860	1342 aa		5.17	□□□□□ -1.58
TNC-208	ENST00000498724	CPD	O75976	1380 aa		5.16	□□□□□ -1.58
TNC-208	ENST00000498724	PHRF1	Q9P1Y6	1649 aa	Known RBP	5.16	□□□□□ -1.58
TNC-208	ENST00000498724	OVOS2	A0A0G2JMS6	1433 aa		5.16	□□□□□ -1.58
TNC-208	ENST00000498724	LMO7	Q8WWI1	1683 aa		5.16	□□□□□ -1.58
TNC-208	ENST00000498724		A0A1W2PQ27	194 aa		5.16	□□□□□ -1.58
TNC-208	ENST00000498724		A0A1W2PQ64	194 aa		5.16	□□□□□ -1.58
TNC-208	ENST00000498724		A0A1W2PQD8	194 aa		5.16	□□□□□ -1.58
TNC-208	ENST00000498724	CBFA2T2	O43439	604 aa		5.16	□□□□□ -1.58
TNC-208	ENST00000498724	TPM1	P09493	284 aa		5.16	□□□□□ -1.58
TNC-208	ENST00000498724	H2AFX	P16104	143 aa	Predicted RBP	5.16	□□□□□ -1.58
TNC-208	ENST00000498724	ATP5J	P18859	108 aa		5.16	□□□□□ -1.58
TNC-208	ENST00000498724	PTPRE	P23469	700 aa		5.16	□□□□□ -1.58
TNC-208	ENST00000498724	ADD1	P35611	737 aa	Known RBP	5.16	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 38 ms