RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PPP6R2O75170 966 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 NFAT5O94916 1531 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 FOSBP53539 338 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 LONRF2Q1L5Z9 754 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 ANO1Q5XXA6 986 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 MAP3K15Q6ZN16 1313 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 C8orf76Q96K31 380 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 FMNL2Q96PY5 1086 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 SEC62Q99442 399 aaKnown RBP11.15□□□□□ -0.62
SYNE1-230ENST00000495090 BAG1Q99933 345 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-230ENST00000495090 SPEF2Q9C093 1822 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 NCOA5Q9HCD5 579 aaKnown RBP11.15□□□□□ -0.62
SYNE1-230ENST00000495090 ADAMTS7Q9UKP4 1686 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 BIN1O00499 593 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 GNG11P61952 73 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 GUCY1B3Q02153 619 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 NEXNQ0ZGT2 675 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 GCKRQ14397 625 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 SLC39A14Q15043 492 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 RABL6Q3YEC7 729 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-230ENST00000495090 ZNF530Q6P9A1 599 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-230ENST00000495090 SYNE3Q6ZMZ3 975 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 USHBP1Q8N6Y0 703 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 DPF2Q92785 391 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 LTV1Q96GA3 475 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-230ENST00000495090 WDR24Q96S15 920 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 C19orf44Q9H6X5 657 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 YY1AP1Q9H869 796 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 RAB21Q9UL25 225 aa11.14□□□□□ -0.63
SYNE1-230ENST00000495090 PLEKHG2Q9H7P9 1386 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 TUBBP07437 444 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 SYKP43405 635 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 PTPN12Q05209 780 aaKnown RBP11.13□□□□□ -0.63
SYNE1-230ENST00000495090 ZMYM1Q5SVZ6 1142 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 OLFM4Q6UX06 510 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 JMYQ8N9B5 988 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 TRERF1Q96PN7 1200 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 ZCCHC17Q9NP64 241 aaKnown RBP11.13□□□□□ -0.63
SYNE1-230ENST00000495090 DDX60Q8IY21 1712 aaKnown RBP11.13□□□□□ -0.63
SYNE1-230ENST00000495090 SLIT3O75094 1523 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 TMEM94Q12767 1356 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 MROH7-TTC4A0A0A0MT08 1334 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 WDR19Q8NEZ3 1342 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 EIF3JO75822 258 aaKnown RBP11.13□□□□□ -0.63
SYNE1-230ENST00000495090 BRD2P25440 801 aaKnown RBP11.13□□□□□ -0.63
SYNE1-230ENST00000495090 TNNT3P45378 269 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-230ENST00000495090 NOP2P46087 812 aaKnown RBP11.13□□□□□ -0.63
SYNE1-230ENST00000495090 TFCP2Q12800 502 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 PDIA6Q15084 440 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 NOM1Q5C9Z4 860 aaKnown RBP11.13□□□□□ -0.63
SYNE1-230ENST00000495090 NBPF6Q5VWK0 638 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 LEKR1Q6ZMV7 388 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 SRGAP1Q7Z6B7 1085 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 GOLGA6L1Q8N7Z2 621 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 MSANTD4Q8NCY6 345 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 CCDC34Q96HJ3 373 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 NBPF4Q96M43 638 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 RSPH14Q9UHP6 348 aa11.13□□□□□ -0.63
SYNE1-230ENST00000495090 RRP15Q9Y3B9 282 aaKnown RBP11.13□□□□□ -0.63
SYNE1-230ENST00000495090 H3BQF6 201 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 HSPD1P10809 573 aaKnown RBP11.12□□□□□ -0.63
SYNE1-230ENST00000495090 LMAN1P49257 510 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 KIF23Q02241 960 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-230ENST00000495090 GNL2Q13823 731 aaKnown RBP11.12□□□□□ -0.63
SYNE1-230ENST00000495090 HDXQ7Z353 690 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 CEP112Q8N8E3 955 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 ABTB2Q8N961 1025 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 TC2NQ8N9U0 490 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 KLHDC4Q8TBB5 520 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 METTL22Q9BUU2 404 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-230ENST00000495090 ESF1Q9H501 851 aaKnown RBP11.12□□□□□ -0.63
SYNE1-230ENST00000495090 GPR108Q9NPR9 543 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 INTS13Q9NVM9 706 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 AMOTL2Q9Y2J4 779 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 TBX22Q9Y458 520 aa11.12□□□□□ -0.63
SYNE1-230ENST00000495090 ERLIN1O75477 346 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 LTKP29376 864 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 C1orf141Q5JVX7 400 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 EPHA10Q5JZY3 1008 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 BEND6Q5SZJ8 279 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-230ENST00000495090 SPECC1LQ69YQ0 1117 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 DDX46Q7L014 1031 aaKnown RBP11.11□□□□□ -0.63
SYNE1-230ENST00000495090 RIC3Q7Z5B4 369 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 DHX58Q96C10 678 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 DBNDD2Q9BQY9 259 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 MKRN1Q9UHC7 482 aaKnown RBP11.11□□□□□ -0.63
SYNE1-230ENST00000495090 TMEM232C9JQI7 657 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 CUTAO60888 179 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 WDHD1O75717 1129 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-230ENST00000495090 POLR3DP05423 398 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-230ENST00000495090 ZNF18P17022 549 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 CHMP4BP1P59074 171 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 RESP18Q5W5W9 173 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 MPRIPQ6WCQ1 1025 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 NAA15Q9BXJ9 866 aaKnown RBP11.11□□□□□ -0.63
SYNE1-230ENST00000495090 EPC1Q9H2F5 836 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.11□□□□□ -0.63
SYNE1-230ENST00000495090 PAG1Q9NWQ8 432 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 TAOK2Q9UL54 1235 aa11.11□□□□□ -0.63
SYNE1-230ENST00000495090 PXDNQ92626 1479 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms