RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 GPCPD1Q9NPB8 672 aa15.36■□□□□ 0.05
UPF3A-210ENST00000493727 HCSTQ9UBK5 93 aa15.36■□□□□ 0.05
UPF3A-210ENST00000493727 SUPT16HQ9Y5B9 1047 aaKnown RBP15.36■□□□□ 0.05
UPF3A-210ENST00000493727 POLR2AP24928 1970 aaKnown RBP15.35■□□□□ 0.05
UPF3A-210ENST00000493727 CCDC85CA6NKD9 419 aa15.35■□□□□ 0.05
UPF3A-210ENST00000493727 CA12O43570 354 aa15.35■□□□□ 0.05
UPF3A-210ENST00000493727 RNF40O75150 1001 aa15.35■□□□□ 0.05
UPF3A-210ENST00000493727 SLC10A3P09131 477 aa15.35■□□□□ 0.05
UPF3A-210ENST00000493727 HSP90B1P14625 803 aaKnown RBP15.35■□□□□ 0.05
UPF3A-210ENST00000493727 BRPF1P55201 1214 aaPredicted RBP15.35■□□□□ 0.05
UPF3A-210ENST00000493727 MLLT1Q03111 559 aaPredicted RBP15.35■□□□□ 0.05
UPF3A-210ENST00000493727 PDE4DQ08499 809 aa15.35■□□□□ 0.05
UPF3A-210ENST00000493727 KIAA2012Q0VF49 1180 aa15.35■□□□□ 0.05
UPF3A-210ENST00000493727 FRAT1Q92837 279 aaPredicted RBP15.35■□□□□ 0.05
UPF3A-210ENST00000493727 KIF16BQ96L93 1317 aa15.35■□□□□ 0.05
UPF3A-210ENST00000493727 HIRAP54198 1017 aaPredicted RBP15.34■□□□□ 0.05
UPF3A-210ENST00000493727 PPP4CP60510 307 aa15.34■□□□□ 0.05
UPF3A-210ENST00000493727 TRIM28Q13263 835 aaKnown RBP15.34■□□□□ 0.05
UPF3A-210ENST00000493727 TRPM4Q8TD43 1214 aa15.34■□□□□ 0.05
UPF3A-210ENST00000493727 ISCA1Q9BUE6 129 aa15.34■□□□□ 0.05
UPF3A-210ENST00000493727 SLC4A3P48751 1232 aa15.33■□□□□ 0.04
UPF3A-210ENST00000493727 RRP1P56182 461 aaKnown RBP15.33■□□□□ 0.04
UPF3A-210ENST00000493727 CIAPIN1Q6FI81 312 aa15.33■□□□□ 0.04
UPF3A-210ENST00000493727 PARP9Q8IXQ6 854 aa15.33■□□□□ 0.04
UPF3A-210ENST00000493727 MCOLN1Q9GZU1 580 aa15.33■□□□□ 0.04
UPF3A-210ENST00000493727 CACNA1FO60840 1977 aa15.33■□□□□ 0.04
UPF3A-210ENST00000493727 YDJCA8MPS7 323 aa15.32■□□□□ 0.04
UPF3A-210ENST00000493727 IPO8O15397 1037 aaKnown RBP15.32■□□□□ 0.04
UPF3A-210ENST00000493727 TNIP1Q15025 636 aa15.32■□□□□ 0.04
UPF3A-210ENST00000493727 SF3B3Q15393 1217 aaKnown RBP15.32■□□□□ 0.04
UPF3A-210ENST00000493727 FAM217BQ9NTX9 383 aaPredicted RBP15.32■□□□□ 0.04
UPF3A-210ENST00000493727 SHTN1A0MZ66 631 aa15.31■□□□□ 0.04
UPF3A-210ENST00000493727 TTLL12Q14166 644 aaPredicted RBP15.31■□□□□ 0.04
UPF3A-210ENST00000493727 RIC3Q7Z5B4 369 aa15.31■□□□□ 0.04
UPF3A-210ENST00000493727 FAM89AQ96GI7 184 aa15.31■□□□□ 0.04
UPF3A-210ENST00000493727 NOB1Q9ULX3 412 aaKnown RBP15.31■□□□□ 0.04
UPF3A-210ENST00000493727 COL4A1P02462 1669 aa15.31■□□□□ 0.04
UPF3A-210ENST00000493727 DDX11L8A8MPP1 907 aa15.3■□□□□ 0.04
UPF3A-210ENST00000493727 ATP5J2-PTCD1G3V325 749 aa15.3■□□□□ 0.04
UPF3A-210ENST00000493727 PLIN1O60240 522 aa15.3■□□□□ 0.04
UPF3A-210ENST00000493727 RAD17O75943 681 aa15.3■□□□□ 0.04
UPF3A-210ENST00000493727 NEFLP07196 543 aa15.3■□□□□ 0.04
UPF3A-210ENST00000493727 ZKSCAN2Q63HK3 967 aa15.3■□□□□ 0.04
UPF3A-210ENST00000493727 CDC37L1Q7L3B6 337 aa15.3■□□□□ 0.04
UPF3A-210ENST00000493727 SULF1Q8IWU6 871 aa15.3■□□□□ 0.04
UPF3A-210ENST00000493727 ZIC5Q96T25 663 aa15.3■□□□□ 0.04
UPF3A-210ENST00000493727 SCN9AQ15858 1988 aa15.29■□□□□ 0.04
UPF3A-210ENST00000493727 IRS4O14654 1257 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-210ENST00000493727 DDX58O95786 925 aaKnown RBP15.29■□□□□ 0.04
UPF3A-210ENST00000493727 FLIIQ13045 1269 aa15.29■□□□□ 0.04
UPF3A-210ENST00000493727 NOGQ13253 232 aa15.29■□□□□ 0.04
UPF3A-210ENST00000493727 FKBP5Q13451 457 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-210ENST00000493727 ZNF408Q9H9D4 720 aa15.29■□□□□ 0.04
UPF3A-210ENST00000493727 PTPRCP08575 1304 aa15.28■□□□□ 0.04
UPF3A-210ENST00000493727 AKAP11Q9UKA4 1901 aa15.28■□□□□ 0.04
UPF3A-210ENST00000493727 G2E3Q7L622 706 aa15.28■□□□□ 0.04
UPF3A-210ENST00000493727 FTSJ3Q8IY81 847 aaKnown RBP15.28■□□□□ 0.04
UPF3A-210ENST00000493727 ZBTB38Q8NAP3 1195 aaPredicted RBP15.28■□□□□ 0.04
UPF3A-210ENST00000493727 API5Q9BZZ5 524 aaKnown RBP15.28■□□□□ 0.04
UPF3A-210ENST00000493727 PHAXQ9H814 394 aaKnown RBP15.28■□□□□ 0.04
UPF3A-210ENST00000493727 CNOT7Q9UIV1 285 aaKnown RBP15.28■□□□□ 0.04
UPF3A-210ENST00000493727 MYH3P11055 1940 aa15.27■□□□□ 0.04
UPF3A-210ENST00000493727 MS4A1P11836 297 aa15.27■□□□□ 0.04
UPF3A-210ENST00000493727 CD46P15529 392 aa15.27■□□□□ 0.04
UPF3A-210ENST00000493727 WASHC4Q2M389 1173 aa15.27■□□□□ 0.04
UPF3A-210ENST00000493727 ATF7IPQ6VMQ6 1270 aa15.27■□□□□ 0.04
UPF3A-210ENST00000493727 NYAP1Q6ZVC0 841 aa15.27■□□□□ 0.04
UPF3A-210ENST00000493727 CCDC191Q8NCU4 936 aa15.27■□□□□ 0.04
UPF3A-210ENST00000493727 EYA3Q99504 573 aa15.27■□□□□ 0.04
UPF3A-210ENST00000493727 NSFL1CQ9UNZ2 370 aaKnown RBP15.27■□□□□ 0.04
UPF3A-210ENST00000493727 PSME4Q14997 1843 aa15.27■□□□□ 0.03
UPF3A-210ENST00000493727 FAM155AB1AL88 458 aaPredicted RBP15.26■□□□□ 0.03
UPF3A-210ENST00000493727 EGFRP00533 1210 aa15.26■□□□□ 0.03
UPF3A-210ENST00000493727 HUNKP57058 714 aa15.26■□□□□ 0.03
UPF3A-210ENST00000493727 RPS8P62241 208 aaKnown RBP15.26■□□□□ 0.03
UPF3A-210ENST00000493727 DGKZQ13574 1117 aa15.26■□□□□ 0.03
UPF3A-210ENST00000493727 DLK2Q6UY11 383 aa15.26■□□□□ 0.03
UPF3A-210ENST00000493727 ARHGAP45Q92619 1136 aa15.26■□□□□ 0.03
UPF3A-210ENST00000493727 DPF2Q92785 391 aa15.26■□□□□ 0.03
UPF3A-210ENST00000493727 CELF1Q92879 486 aaKnown RBP15.26■□□□□ 0.03
UPF3A-210ENST00000493727 C6orf229H3BNL8 230 aa15.25■□□□□ 0.03
UPF3A-210ENST00000493727 H7C1D1 291 aa15.25■□□□□ 0.03
UPF3A-210ENST00000493727 PSMD14O00487 310 aa15.25■□□□□ 0.03
UPF3A-210ENST00000493727 PCCAP05165 728 aaPredicted RBP15.25■□□□□ 0.03
UPF3A-210ENST00000493727 TRIM27P14373 513 aa15.25■□□□□ 0.03
UPF3A-210ENST00000493727 SSTR3P32745 418 aaPredicted RBP15.25■□□□□ 0.03
UPF3A-210ENST00000493727 CCDC152Q4G0S7 254 aa15.25■□□□□ 0.03
UPF3A-210ENST00000493727 RTL5Q5HYW3 569 aaPredicted RBP15.25■□□□□ 0.03
UPF3A-210ENST00000493727 USP48Q86UV5 1035 aa15.25■□□□□ 0.03
UPF3A-210ENST00000493727 DZIP1LQ8IYY4 767 aaKnown RBP15.25■□□□□ 0.03
UPF3A-210ENST00000493727 RDH13Q8NBN7 331 aa15.25■□□□□ 0.03
UPF3A-210ENST00000493727 CLUAP1Q96AJ1 413 aa15.25■□□□□ 0.03
UPF3A-210ENST00000493727 MYD88Q99836 296 aa15.25■□□□□ 0.03
UPF3A-210ENST00000493727 CWC25Q9NXE8 425 aaPredicted RBP15.25■□□□□ 0.03
UPF3A-210ENST00000493727 RTL9Q8NET4 1388 aa15.24■□□□□ 0.03
UPF3A-210ENST00000493727 PDE8AO60658 829 aa15.24■□□□□ 0.03
UPF3A-210ENST00000493727 METTL22Q9BUU2 404 aaPredicted RBP15.24■□□□□ 0.03
UPF3A-210ENST00000493727 SAGE1Q9NXZ1 904 aa15.24■□□□□ 0.03
UPF3A-210ENST00000493727 CFHP08603 1231 aa15.23■□□□□ 0.03
UPF3A-210ENST00000493727 RPS12P25398 132 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms