RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 IFIT1P09914 478 aaKnown RBP17.07■□□□□ 0.32
COL6A3-211ENST00000491233 FGFR2P21802 821 aa17.07■□□□□ 0.32
COL6A3-211ENST00000491233 BCAMP50895 628 aa17.07■□□□□ 0.32
COL6A3-211ENST00000491233 ZNF296Q8WUU4 475 aaPredicted RBP17.07■□□□□ 0.32
COL6A3-211ENST00000491233 SLC10A4Q96EP9 437 aa17.07■□□□□ 0.32
COL6A3-211ENST00000491233 MANSC4A6NHS7 340 aaPredicted RBP17.06■□□□□ 0.32
COL6A3-211ENST00000491233 ZBTB48P10074 688 aaPredicted RBP17.06■□□□□ 0.32
COL6A3-211ENST00000491233 IREB2P48200 963 aaKnown RBP17.06■□□□□ 0.32
COL6A3-211ENST00000491233 CDAN1Q8IWY9 1227 aa17.06■□□□□ 0.32
COL6A3-211ENST00000491233 API5Q9BZZ5 524 aaKnown RBP17.06■□□□□ 0.32
COL6A3-211ENST00000491233 TCP10L2B9ZVM9 353 aa17.05■□□□□ 0.32
COL6A3-211ENST00000491233 GPR25O00155 361 aa17.05■□□□□ 0.32
COL6A3-211ENST00000491233 USP2O75604 605 aaPredicted RBP17.05■□□□□ 0.32
COL6A3-211ENST00000491233 SLC5A1P13866 664 aa17.05■□□□□ 0.32
COL6A3-211ENST00000491233 RGS19P49795 217 aa17.05■□□□□ 0.32
COL6A3-211ENST00000491233 MLLT1Q03111 559 aaPredicted RBP17.05■□□□□ 0.32
COL6A3-211ENST00000491233 UNCXA6NJT0 531 aa17.04■□□□□ 0.32
COL6A3-211ENST00000491233 TNNI2P48788 182 aa17.04■□□□□ 0.32
COL6A3-211ENST00000491233 HDLBPQ00341 1268 aaKnown RBP17.04■□□□□ 0.32
COL6A3-211ENST00000491233 NOM1Q5C9Z4 860 aaKnown RBP17.04■□□□□ 0.32
COL6A3-211ENST00000491233 ATG9AQ7Z3C6 839 aa17.04■□□□□ 0.32
COL6A3-211ENST00000491233 ANKRD13AQ8IZ07 590 aa17.04■□□□□ 0.32
COL6A3-211ENST00000491233 TEKT1Q969V4 418 aa17.04■□□□□ 0.32
COL6A3-211ENST00000491233 TEPSINQ96N21 525 aa17.04■□□□□ 0.32
COL6A3-211ENST00000491233 CFHR5Q9BXR6 569 aa17.04■□□□□ 0.32
COL6A3-211ENST00000491233 TMEM39BQ9GZU3 492 aa17.04■□□□□ 0.32
COL6A3-211ENST00000491233 SIL1Q9H173 461 aa17.04■□□□□ 0.32
COL6A3-211ENST00000491233 R3HDMLQ9H3Y0 253 aa17.04■□□□□ 0.32
COL6A3-211ENST00000491233 LRRFIP2Q9Y608 721 aaKnown RBP17.04■□□□□ 0.32
COL6A3-211ENST00000491233 MAST3O60307 1309 aa17.03■□□□□ 0.32
COL6A3-211ENST00000491233 GJA5P36382 358 aa17.03■□□□□ 0.32
COL6A3-211ENST00000491233 CACNB3P54284 484 aa17.03■□□□□ 0.32
COL6A3-211ENST00000491233 LPIN2Q92539 896 aa17.03■□□□□ 0.32
COL6A3-211ENST00000491233 IGF2BP3O00425 579 aaKnown RBP eCLIP17.02■□□□□ 0.32
COL6A3-211ENST00000491233 CIAO1O76071 339 aa17.02■□□□□ 0.32
COL6A3-211ENST00000491233 ALDH1A1P00352 501 aa17.02■□□□□ 0.32
COL6A3-211ENST00000491233 RARSP54136 660 aaKnown RBP17.02■□□□□ 0.32
COL6A3-211ENST00000491233 SOX10P56693 466 aa17.02■□□□□ 0.32
COL6A3-211ENST00000491233 ATP2B3Q16720 1220 aa17.02■□□□□ 0.32
COL6A3-211ENST00000491233 IFNL1Q8IU54 200 aa17.02■□□□□ 0.32
COL6A3-211ENST00000491233 ZDHHC15Q96MV8 337 aa17.02■□□□□ 0.32
COL6A3-211ENST00000491233 MEIS3Q99687 375 aa17.02■□□□□ 0.32
COL6A3-211ENST00000491233 ELP3Q9H9T3 547 aa17.02■□□□□ 0.32
COL6A3-211ENST00000491233 FBXO3Q9UK99 471 aa17.02■□□□□ 0.32
COL6A3-211ENST00000491233 FKTNO75072 461 aa17.01■□□□□ 0.31
COL6A3-211ENST00000491233 INHBEP58166 350 aa17.01■□□□□ 0.31
COL6A3-211ENST00000491233 TMOD2Q9NZR1 351 aa17.01■□□□□ 0.31
COL6A3-211ENST00000491233 HPS5Q9UPZ3 1129 aa17.01■□□□□ 0.31
COL6A3-211ENST00000491233 SUGT1Q9Y2Z0 365 aa17.01■□□□□ 0.31
COL6A3-211ENST00000491233 WDR66Q8TBY9 1149 aa17■□□□□ 0.31
COL6A3-211ENST00000491233 OPTNQ96CV9 577 aa17■□□□□ 0.31
COL6A3-211ENST00000491233 CEP126Q9P2H0 1117 aa17■□□□□ 0.31
COL6A3-211ENST00000491233 PA2G4Q9UQ80 394 aaKnown RBP17■□□□□ 0.31
COL6A3-211ENST00000491233 HDAC5Q9UQL6 1122 aa17■□□□□ 0.31
COL6A3-211ENST00000491233 PKN2Q16513 984 aaKnown RBP16.99■□□□□ 0.31
COL6A3-211ENST00000491233 APOBEC3HQ6NTF7 200 aaKnown RBP16.99■□□□□ 0.31
COL6A3-211ENST00000491233 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.99■□□□□ 0.31
COL6A3-211ENST00000491233 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.99■□□□□ 0.31
COL6A3-211ENST00000491233 AK9Q5TCS8 1911 aa16.99■□□□□ 0.31
COL6A3-211ENST00000491233 MYH2Q9UKX2 1941 aa16.99■□□□□ 0.31
COL6A3-211ENST00000491233 RPAP1Q9BWH6 1393 aaPredicted RBP16.99■□□□□ 0.31
COL6A3-211ENST00000491233 DOCK2Q92608 1830 aa16.98■□□□□ 0.31
COL6A3-211ENST00000491233 IL15P40933 162 aaPredicted RBP16.98■□□□□ 0.31
COL6A3-211ENST00000491233 VGLL4Q14135 290 aa16.98■□□□□ 0.31
COL6A3-211ENST00000491233 INTS3Q68E01 1043 aaKnown RBP16.98■□□□□ 0.31
COL6A3-211ENST00000491233 HHIPL2Q6UWX4 724 aa16.98■□□□□ 0.31
COL6A3-211ENST00000491233 FAM83AQ86UY5 434 aa16.98■□□□□ 0.31
COL6A3-211ENST00000491233 CNKSR2Q8WXI2 1034 aa16.98■□□□□ 0.31
COL6A3-211ENST00000491233 MRIQ9BWK5 157 aa16.98■□□□□ 0.31
COL6A3-211ENST00000491233 COPRSQ9NQ92 184 aa16.98■□□□□ 0.31
COL6A3-211ENST00000491233 CSADQ9Y600 493 aa16.98■□□□□ 0.31
COL6A3-211ENST00000491233 PRDX5P30044 214 aa16.97■□□□□ 0.31
COL6A3-211ENST00000491233 PHKA1P46020 1223 aa16.97■□□□□ 0.31
COL6A3-211ENST00000491233 MAP3K9P80192 1104 aa16.97■□□□□ 0.31
COL6A3-211ENST00000491233 DIXDC1Q155Q3 683 aa16.97■□□□□ 0.31
COL6A3-211ENST00000491233 FKBP1CQ5VVH2 108 aa16.97■□□□□ 0.31
COL6A3-211ENST00000491233 FBXO46Q6PJ61 603 aaPredicted RBP16.97■□□□□ 0.31
COL6A3-211ENST00000491233 ARHGAP45Q92619 1136 aa16.97■□□□□ 0.31
COL6A3-211ENST00000491233 GNL3LQ9NVN8 582 aaKnown RBP16.97■□□□□ 0.31
COL6A3-211ENST00000491233 DAGLAQ9Y4D2 1042 aa16.97■□□□□ 0.31
COL6A3-211ENST00000491233 TESPA1A2RU30 521 aaPredicted RBP16.96■□□□□ 0.31
COL6A3-211ENST00000491233 ADORA1P30542 326 aa16.96■□□□□ 0.31
COL6A3-211ENST00000491233 CRHR2Q13324 411 aa16.96■□□□□ 0.31
COL6A3-211ENST00000491233 OTUD7BQ6GQQ9 843 aa16.96■□□□□ 0.31
COL6A3-211ENST00000491233 OTUD5Q96G74 571 aa16.96■□□□□ 0.31
COL6A3-211ENST00000491233 PTPN18Q99952 460 aa16.96■□□□□ 0.31
COL6A3-211ENST00000491233 TNNQ9UQP3 1299 aa16.96■□□□□ 0.31
COL6A3-211ENST00000491233 GNAI3P08754 354 aa16.95■□□□□ 0.3
COL6A3-211ENST00000491233 WRNIP1Q96S55 665 aa16.95■□□□□ 0.3
COL6A3-211ENST00000491233 DENND2AQ9ULE3 1009 aa16.95■□□□□ 0.3
COL6A3-211ENST00000491233 SNCAIPQ9Y6H5 919 aa16.95■□□□□ 0.3
COL6A3-211ENST00000491233 SALL1Q9NSC2 1324 aa16.95■□□□□ 0.3
COL6A3-211ENST00000491233 CCL15-CCL14A0A0B4J2E2 113 aa16.94■□□□□ 0.3
COL6A3-211ENST00000491233 SPDYE5A6NIY4 337 aa16.94■□□□□ 0.3
COL6A3-211ENST00000491233 SEMA3EO15041 775 aa16.94■□□□□ 0.3
COL6A3-211ENST00000491233 SRGAP3O43295 1099 aa16.94■□□□□ 0.3
COL6A3-211ENST00000491233 LDHBP07195 334 aaKnown RBP16.94■□□□□ 0.3
COL6A3-211ENST00000491233 TRIM27P14373 513 aa16.94■□□□□ 0.3
COL6A3-211ENST00000491233 CCL15Q16663 113 aa16.94■□□□□ 0.3
COL6A3-211ENST00000491233 CCDC102BQ68D86 513 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms