RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 AKAP2Q9Y2D5 859 aa22.43■■□□□ 1.18
COL9A3-214ENST00000490398 FAM155AB1AL88 458 aaPredicted RBP22.42■■□□□ 1.18
COL9A3-214ENST00000490398 UBE2Q2LH0YL09 131 aa22.42■■□□□ 1.18
COL9A3-214ENST00000490398 PRDX5P30044 214 aa22.42■■□□□ 1.18
COL9A3-214ENST00000490398 PRKG1Q13976 671 aa22.42■■□□□ 1.18
COL9A3-214ENST00000490398 SPDYE2Q495Y8 402 aa22.42■■□□□ 1.18
COL9A3-214ENST00000490398 RGMBQ6NW40 437 aa22.42■■□□□ 1.18
COL9A3-214ENST00000490398 CDAN1Q8IWY9 1227 aa22.42■■□□□ 1.18
COL9A3-214ENST00000490398 WDR66Q8TBY9 1149 aa22.42■■□□□ 1.18
COL9A3-214ENST00000490398 NOP58Q9Y2X3 529 aaKnown RBP22.42■■□□□ 1.18
COL9A3-214ENST00000490398 THSD7BQ9C0I4 1608 aa22.42■■□□□ 1.18
COL9A3-214ENST00000490398 SSC5DA1L4H1 1573 aa22.42■■□□□ 1.18
COL9A3-214ENST00000490398 MS4A1P11836 297 aa22.41■■□□□ 1.18
COL9A3-214ENST00000490398 CACNB3P54284 484 aa22.41■■□□□ 1.18
COL9A3-214ENST00000490398 DIXDC1Q155Q3 683 aa22.41■■□□□ 1.18
COL9A3-214ENST00000490398 ZBTB40Q9NUA8 1239 aa22.41■■□□□ 1.18
COL9A3-214ENST00000490398 GNL3LQ9NVN8 582 aaKnown RBP22.41■■□□□ 1.18
COL9A3-214ENST00000490398 MYO1BO43795 1136 aa22.4■■□□□ 1.18
COL9A3-214ENST00000490398 RASA3Q14644 834 aa22.4■■□□□ 1.18
COL9A3-214ENST00000490398 APOBEC3HQ6NTF7 200 aaKnown RBP22.4■■□□□ 1.18
COL9A3-214ENST00000490398 PI16Q6UXB8 463 aa22.4■■□□□ 1.18
COL9A3-214ENST00000490398 SIRT2Q8IXJ6 389 aa22.4■■□□□ 1.18
COL9A3-214ENST00000490398 DENND2AQ9ULE3 1009 aa22.4■■□□□ 1.18
COL9A3-214ENST00000490398 ZNF157P51786 506 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-214ENST00000490398 HDLBPQ00341 1268 aaKnown RBP22.39■■□□□ 1.17
COL9A3-214ENST00000490398 OS9Q13438 667 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-214ENST00000490398 TNNI3KQ59H18 835 aa22.39■■□□□ 1.17
COL9A3-214ENST00000490398 NBPF12Q5TAG4 269 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-214ENST00000490398 TEKT1Q969V4 418 aa22.39■■□□□ 1.17
COL9A3-214ENST00000490398 DDX19BQ9UMR2 479 aa22.39■■□□□ 1.17
COL9A3-214ENST00000490398 SUGT1Q9Y2Z0 365 aa22.39■■□□□ 1.17
COL9A3-214ENST00000490398 FPGT-TNNI3KV9GXZ4 949 aa22.39■■□□□ 1.17
COL9A3-214ENST00000490398 PAPPA2Q9BXP8 1791 aa22.38■■□□□ 1.17
COL9A3-214ENST00000490398 TCP10L2B9ZVM9 353 aa22.38■■□□□ 1.17
COL9A3-214ENST00000490398 SEMA3EO15041 775 aa22.38■■□□□ 1.17
COL9A3-214ENST00000490398 COL13A1Q5TAT6 717 aaPredicted RBP22.38■■□□□ 1.17
COL9A3-214ENST00000490398 ZDHHC15Q96MV8 337 aa22.38■■□□□ 1.17
COL9A3-214ENST00000490398 DBNDD2Q9BQY9 259 aa22.38■■□□□ 1.17
COL9A3-214ENST00000490398 HMG20BQ9P0W2 317 aa22.38■■□□□ 1.17
COL9A3-214ENST00000490398 EXOC6BQ9Y2D4 811 aa22.38■■□□□ 1.17
COL9A3-214ENST00000490398 SALL1Q9NSC2 1324 aa22.37■■□□□ 1.17
COL9A3-214ENST00000490398 ECM29Q5VYK3 1845 aa22.37■■□□□ 1.17
COL9A3-214ENST00000490398 ZBTB22O15209 634 aa22.37■■□□□ 1.17
COL9A3-214ENST00000490398 FKBP1BP68106 108 aa22.37■■□□□ 1.17
COL9A3-214ENST00000490398 TTLL12Q14166 644 aaPredicted RBP22.37■■□□□ 1.17
COL9A3-214ENST00000490398 RASAL3Q86YV0 1011 aa22.37■■□□□ 1.17
COL9A3-214ENST00000490398 MRIQ9BWK5 157 aa22.37■■□□□ 1.17
COL9A3-214ENST00000490398 TLR7Q9NYK1 1049 aaKnown RBP22.37■■□□□ 1.17
COL9A3-214ENST00000490398 MYH13Q9UKX3 1938 aa22.36■■□□□ 1.17
COL9A3-214ENST00000490398 SLC10A3P09131 477 aa22.36■■□□□ 1.17
COL9A3-214ENST00000490398 MAP2K2P36507 400 aa22.36■■□□□ 1.17
COL9A3-214ENST00000490398 PDE3AQ14432 1141 aa22.36■■□□□ 1.17
COL9A3-214ENST00000490398 HHIPL2Q6UWX4 724 aa22.36■■□□□ 1.17
COL9A3-214ENST00000490398 TEPSINQ96N21 525 aa22.36■■□□□ 1.17
COL9A3-214ENST00000490398 TMEM39BQ9GZU3 492 aa22.36■■□□□ 1.17
COL9A3-214ENST00000490398 GPR108Q9NPR9 543 aa22.36■■□□□ 1.17
COL9A3-214ENST00000490398 DAGLAQ9Y4D2 1042 aa22.36■■□□□ 1.17
COL9A3-214ENST00000490398 LDHBP07195 334 aaKnown RBP22.35■■□□□ 1.17
COL9A3-214ENST00000490398 MAP2K1Q02750 393 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-214ENST00000490398 GORABQ5T7V8 394 aa22.35■■□□□ 1.17
COL9A3-214ENST00000490398 TBC1D9Q6ZT07 1266 aa22.35■■□□□ 1.17
COL9A3-214ENST00000490398 ZNF384Q8TF68 577 aa22.35■■□□□ 1.17
COL9A3-214ENST00000490398 EAF2Q96CJ1 260 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-214ENST00000490398 CCDC8Q9H0W5 538 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-214ENST00000490398 ANGEL1Q9UNK9 670 aaKnown RBP22.35■■□□□ 1.17
COL9A3-214ENST00000490398 PPP2R3BQ9Y5P8 575 aa22.35■■□□□ 1.17
COL9A3-214ENST00000490398 MAST3O60307 1309 aa22.34■■□□□ 1.17
COL9A3-214ENST00000490398 ARID4AP29374 1257 aaPredicted RBP22.34■■□□□ 1.17
COL9A3-214ENST00000490398 NF2P35240 595 aa22.34■■□□□ 1.17
COL9A3-214ENST00000490398 MCAMP43121 646 aa22.34■■□□□ 1.17
COL9A3-214ENST00000490398 KIF23Q02241 960 aaPredicted RBP22.34■■□□□ 1.17
COL9A3-214ENST00000490398 NOGQ13253 232 aa22.34■■□□□ 1.17
COL9A3-214ENST00000490398 ABCF2Q9UG63 623 aa22.34■■□□□ 1.17
COL9A3-214ENST00000490398 TSKSQ9UJT2 592 aa22.34■■□□□ 1.17
COL9A3-214ENST00000490398 DBNLQ9UJU6 430 aaKnown RBP22.34■■□□□ 1.17
COL9A3-214ENST00000490398 PDS5AQ29RF7 1337 aaKnown RBP22.33■■□□□ 1.17
COL9A3-214ENST00000490398 LDLRAD1Q5T700 205 aa22.33■■□□□ 1.17
COL9A3-214ENST00000490398 SPATA5Q8NB90 893 aa22.33■■□□□ 1.17
COL9A3-214ENST00000490398 CCDC102AQ96A19 550 aa22.33■■□□□ 1.17
COL9A3-214ENST00000490398 SNRKQ9NRH2 765 aa22.33■■□□□ 1.17
COL9A3-214ENST00000490398 HSPA8P11142 646 aaKnown RBP22.32■■□□□ 1.16
COL9A3-214ENST00000490398 CDC42EP5Q6NZY7 148 aa22.32■■□□□ 1.16
COL9A3-214ENST00000490398 RPAP2Q8IXW5 612 aaPredicted RBP22.32■■□□□ 1.16
COL9A3-214ENST00000490398 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.32■■□□□ 1.16
COL9A3-214ENST00000490398 AIDAQ96BJ3 306 aa22.32■■□□□ 1.16
COL9A3-214ENST00000490398 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.32■■□□□ 1.16
COL9A3-214ENST00000490398 USP2O75604 605 aaPredicted RBP22.31■■□□□ 1.16
COL9A3-214ENST00000490398 NFIAQ12857 509 aa22.31■■□□□ 1.16
COL9A3-214ENST00000490398 CLMNQ96JQ2 1002 aa22.31■■□□□ 1.16
COL9A3-214ENST00000490398 APBB1O00213 710 aa22.3■■□□□ 1.16
COL9A3-214ENST00000490398 LBX1P52954 281 aa22.3■■□□□ 1.16
COL9A3-214ENST00000490398 MKRN3Q13064 507 aaKnown RBP22.3■■□□□ 1.16
COL9A3-214ENST00000490398 TNFAIP1Q13829 316 aa22.3■■□□□ 1.16
COL9A3-214ENST00000490398 MAP3K11Q16584 847 aa22.3■■□□□ 1.16
COL9A3-214ENST00000490398 SUPT20HL1Q3ZLR7 823 aa22.3■■□□□ 1.16
COL9A3-214ENST00000490398 ARMC9Q7Z3E5 817 aa22.3■■□□□ 1.16
COL9A3-214ENST00000490398 CSRNP1Q96S65 589 aa22.3■■□□□ 1.16
COL9A3-214ENST00000490398 IL1RAPL2Q9NP60 686 aa22.3■■□□□ 1.16
COL9A3-214ENST00000490398 CTCFP49711 727 aaPredicted RBP22.29■■□□□ 1.16
COL9A3-214ENST00000490398 MECOMQ03112 1051 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms