RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 SPDYE2Q495Y8 402 aa26.2■■□□□ 1.78
LIME1-207ENST00000489212 WDR66Q8TBY9 1149 aa26.2■■□□□ 1.78
LIME1-207ENST00000489212 XAGE2Q96GT9 111 aa26.2■■□□□ 1.78
LIME1-207ENST00000489212 TDRD3Q9H7E2 651 aaKnown RBP26.2■■□□□ 1.78
LIME1-207ENST00000489212 GNL3LQ9NVN8 582 aaKnown RBP26.2■■□□□ 1.78
LIME1-207ENST00000489212 ZNF70Q9UC06 446 aaPredicted RBP26.2■■□□□ 1.78
LIME1-207ENST00000489212 SUGT1Q9Y2Z0 365 aa26.2■■□□□ 1.78
LIME1-207ENST00000489212 ZNF157P51786 506 aaPredicted RBP26.19■■□□□ 1.78
LIME1-207ENST00000489212 COL13A1Q5TAT6 717 aaPredicted RBP26.19■■□□□ 1.78
LIME1-207ENST00000489212 UBE2Q2LH0YL09 131 aa26.18■■□□□ 1.78
LIME1-207ENST00000489212 MS4A1P11836 297 aa26.18■■□□□ 1.78
LIME1-207ENST00000489212 AIDAQ96BJ3 306 aa26.18■■□□□ 1.78
LIME1-207ENST00000489212 SSC5DA1L4H1 1573 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 SEMA3EO15041 775 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 ZBTB22O15209 634 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 NF2P35240 595 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 NOGQ13253 232 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 MVPQ14764 893 aaKnown RBP26.17■■□□□ 1.78
LIME1-207ENST00000489212 CEP85Q6P2H3 762 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 TEKT1Q969V4 418 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 NEUROD6Q96NK8 337 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 MRIQ9BWK5 157 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 DENND2AQ9ULE3 1009 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 COG6Q9Y2V7 657 aa26.17■■□□□ 1.78
LIME1-207ENST00000489212 RASGRF1Q13972 1273 aa26.16■■□□□ 1.78
LIME1-207ENST00000489212 PRKG1Q13976 671 aa26.16■■□□□ 1.78
LIME1-207ENST00000489212 TTLL12Q14166 644 aaPredicted RBP26.16■■□□□ 1.78
LIME1-207ENST00000489212 RASA3Q14644 834 aa26.16■■□□□ 1.78
LIME1-207ENST00000489212 CCDC102AQ96A19 550 aa26.16■■□□□ 1.78
LIME1-207ENST00000489212 ZDHHC15Q96MV8 337 aa26.16■■□□□ 1.78
LIME1-207ENST00000489212 FZD1Q9UP38 647 aa26.16■■□□□ 1.78
LIME1-207ENST00000489212 PPP2R3BQ9Y5P8 575 aa26.16■■□□□ 1.78
LIME1-207ENST00000489212 SURF6O75683 361 aaKnown RBP26.15■■□□□ 1.78
LIME1-207ENST00000489212 SLC10A3P09131 477 aa26.15■■□□□ 1.78
LIME1-207ENST00000489212 PRDX5P30044 214 aa26.15■■□□□ 1.78
LIME1-207ENST00000489212 APOBEC3HQ6NTF7 200 aaKnown RBP26.15■■□□□ 1.78
LIME1-207ENST00000489212 NOP58Q9Y2X3 529 aaKnown RBP26.15■■□□□ 1.78
LIME1-207ENST00000489212 MAST3O60307 1309 aa26.14■■□□□ 1.78
LIME1-207ENST00000489212 SALL1Q9NSC2 1324 aa26.14■■□□□ 1.78
LIME1-207ENST00000489212 CTCFP49711 727 aaPredicted RBP26.14■■□□□ 1.78
LIME1-207ENST00000489212 NBPF12Q5TAG4 269 aaPredicted RBP26.14■■□□□ 1.78
LIME1-207ENST00000489212 RASAL3Q86YV0 1011 aa26.14■■□□□ 1.78
LIME1-207ENST00000489212 C20orf194Q5TEA3 1177 aa26.13■■□□□ 1.77
LIME1-207ENST00000489212 HHIPL2Q6UWX4 724 aa26.13■■□□□ 1.77
LIME1-207ENST00000489212 TCP10L2B9ZVM9 353 aa26.12■■□□□ 1.77
LIME1-207ENST00000489212 HSPA8P11142 646 aaKnown RBP26.12■■□□□ 1.77
LIME1-207ENST00000489212 CACNB3P54284 484 aa26.12■■□□□ 1.77
LIME1-207ENST00000489212 OS9Q13438 667 aaPredicted RBP26.12■■□□□ 1.77
LIME1-207ENST00000489212 DIXDC1Q155Q3 683 aa26.12■■□□□ 1.77
LIME1-207ENST00000489212 CDAN1Q8IWY9 1227 aa26.12■■□□□ 1.77
LIME1-207ENST00000489212 PDS5AQ29RF7 1337 aaKnown RBP26.12■■□□□ 1.77
LIME1-207ENST00000489212 LDHBP07195 334 aaKnown RBP26.11■■□□□ 1.77
LIME1-207ENST00000489212 KIF23Q02241 960 aaPredicted RBP26.11■■□□□ 1.77
LIME1-207ENST00000489212 TNFAIP1Q13829 316 aa26.11■■□□□ 1.77
LIME1-207ENST00000489212 ARMC9Q7Z3E5 817 aa26.11■■□□□ 1.77
LIME1-207ENST00000489212 ZBTB40Q9NUA8 1239 aa26.11■■□□□ 1.77
LIME1-207ENST00000489212 DDX19BQ9UMR2 479 aa26.11■■□□□ 1.77
LIME1-207ENST00000489212 ANGEL1Q9UNK9 670 aaKnown RBP26.11■■□□□ 1.77
LIME1-207ENST00000489212 LBX1P52954 281 aa26.1■■□□□ 1.77
LIME1-207ENST00000489212 TNNI3KQ59H18 835 aa26.1■■□□□ 1.77
LIME1-207ENST00000489212 LDLRAD1Q5T700 205 aa26.1■■□□□ 1.77
LIME1-207ENST00000489212 TEPSINQ96N21 525 aa26.1■■□□□ 1.77
LIME1-207ENST00000489212 BEGAINQ9BUH8 593 aa26.1■■□□□ 1.77
LIME1-207ENST00000489212 TMEM39BQ9GZU3 492 aa26.1■■□□□ 1.77
LIME1-207ENST00000489212 GPR108Q9NPR9 543 aa26.1■■□□□ 1.77
LIME1-207ENST00000489212 DAGLAQ9Y4D2 1042 aa26.1■■□□□ 1.77
LIME1-207ENST00000489212 FPGT-TNNI3KV9GXZ4 949 aa26.1■■□□□ 1.77
LIME1-207ENST00000489212 SUPT20HL1Q3ZLR7 823 aa26.09■■□□□ 1.77
LIME1-207ENST00000489212 GORABQ5T7V8 394 aa26.09■■□□□ 1.77
LIME1-207ENST00000489212 PI16Q6UXB8 463 aa26.09■■□□□ 1.77
LIME1-207ENST00000489212 HMG20BQ9P0W2 317 aa26.09■■□□□ 1.77
LIME1-207ENST00000489212 ARID4AP29374 1257 aaPredicted RBP26.08■■□□□ 1.77
LIME1-207ENST00000489212 MAP3K11Q16584 847 aa26.08■■□□□ 1.77
LIME1-207ENST00000489212 DBNDD2Q9BQY9 259 aa26.08■■□□□ 1.77
LIME1-207ENST00000489212 TSKSQ9UJT2 592 aa26.08■■□□□ 1.77
LIME1-207ENST00000489212 PDE3AQ14432 1141 aa26.07■■□□□ 1.76
LIME1-207ENST00000489212 ZGPATQ8N5A5 531 aaKnown RBP26.07■■□□□ 1.76
LIME1-207ENST00000489212 PRDM10Q9NQV6 1147 aa26.07■■□□□ 1.76
LIME1-207ENST00000489212 EXOC6BQ9Y2D4 811 aa26.07■■□□□ 1.76
LIME1-207ENST00000489212 MYH2Q9UKX2 1941 aa26.06■■□□□ 1.76
LIME1-207ENST00000489212 PPP1R12BO60237 982 aaPredicted RBP26.06■■□□□ 1.76
LIME1-207ENST00000489212 SIRT2Q8IXJ6 389 aa26.06■■□□□ 1.76
LIME1-207ENST00000489212 CSRNP1Q96S65 589 aa26.06■■□□□ 1.76
LIME1-207ENST00000489212 ABCF2Q9UG63 623 aa26.06■■□□□ 1.76
LIME1-207ENST00000489212 USP2O75604 605 aaPredicted RBP26.05■■□□□ 1.76
LIME1-207ENST00000489212 MCAMP43121 646 aa26.05■■□□□ 1.76
LIME1-207ENST00000489212 TNNI2P48788 182 aa26.05■■□□□ 1.76
LIME1-207ENST00000489212 CDC42EP5Q6NZY7 148 aa26.05■■□□□ 1.76
LIME1-207ENST00000489212 SPATA5Q8NB90 893 aa26.05■■□□□ 1.76
LIME1-207ENST00000489212 TMOD2Q9NZR1 351 aa26.05■■□□□ 1.76
LIME1-207ENST00000489212 FKBP1CQ5VVH2 108 aa26.04■■□□□ 1.76
LIME1-207ENST00000489212 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.04■■□□□ 1.76
LIME1-207ENST00000489212 EAF2Q96CJ1 260 aaPredicted RBP26.04■■□□□ 1.76
LIME1-207ENST00000489212 CLMNQ96JQ2 1002 aa26.04■■□□□ 1.76
LIME1-207ENST00000489212 YTHDC1Q96MU7 727 aaKnown RBP26.04■■□□□ 1.76
LIME1-207ENST00000489212 CA12O43570 354 aa26.03■■□□□ 1.76
LIME1-207ENST00000489212 MKRN3Q13064 507 aaKnown RBP26.03■■□□□ 1.76
LIME1-207ENST00000489212 TBC1D9Q6ZT07 1266 aa26.03■■□□□ 1.76
LIME1-207ENST00000489212 FAM83AQ86UY5 434 aa26.03■■□□□ 1.76
LIME1-207ENST00000489212 RPAP2Q8IXW5 612 aaPredicted RBP26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms