RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 SIRT2Q8IXJ6 389 aa17.2■□□□□ 0.34
SYNE1-226ENST00000488376 C2orf69Q8N8R5 385 aa17.2■□□□□ 0.34
SYNE1-226ENST00000488376 DEFB129Q9H1M3 183 aa17.2■□□□□ 0.34
SYNE1-226ENST00000488376 ZNF70Q9UC06 446 aaPredicted RBP17.2■□□□□ 0.34
SYNE1-226ENST00000488376 AKAP2Q9Y2D5 859 aa17.2■□□□□ 0.34
SYNE1-226ENST00000488376 FAM155AB1AL88 458 aaPredicted RBP17.19■□□□□ 0.34
SYNE1-226ENST00000488376 MS4A1P11836 297 aa17.19■□□□□ 0.34
SYNE1-226ENST00000488376 CACNB3P54284 484 aa17.19■□□□□ 0.34
SYNE1-226ENST00000488376 OS9Q13438 667 aaPredicted RBP17.19■□□□□ 0.34
SYNE1-226ENST00000488376 PRKG1Q13976 671 aa17.19■□□□□ 0.34
SYNE1-226ENST00000488376 DIXDC1Q155Q3 683 aa17.19■□□□□ 0.34
SYNE1-226ENST00000488376 WDR66Q8TBY9 1149 aa17.19■□□□□ 0.34
SYNE1-226ENST00000488376 HHIPL1Q96JK4 782 aa17.19■□□□□ 0.34
SYNE1-226ENST00000488376 EXOC6BQ9Y2D4 811 aa17.19■□□□□ 0.34
SYNE1-226ENST00000488376 NOP58Q9Y2X3 529 aaKnown RBP17.19■□□□□ 0.34
SYNE1-226ENST00000488376 UBE2Q2LH0YL09 131 aa17.18■□□□□ 0.34
SYNE1-226ENST00000488376 FOXN1O15353 648 aa17.18■□□□□ 0.34
SYNE1-226ENST00000488376 TNNI3KQ59H18 835 aa17.18■□□□□ 0.34
SYNE1-226ENST00000488376 APOBEC3HQ6NTF7 200 aaKnown RBP17.18■□□□□ 0.34
SYNE1-226ENST00000488376 TEKT1Q969V4 418 aa17.18■□□□□ 0.34
SYNE1-226ENST00000488376 DBNDD2Q9BQY9 259 aa17.18■□□□□ 0.34
SYNE1-226ENST00000488376 GNL3LQ9NVN8 582 aaKnown RBP17.18■□□□□ 0.34
SYNE1-226ENST00000488376 TLR7Q9NYK1 1049 aaKnown RBP17.18■□□□□ 0.34
SYNE1-226ENST00000488376 DENND2AQ9ULE3 1009 aa17.18■□□□□ 0.34
SYNE1-226ENST00000488376 DDX19BQ9UMR2 479 aa17.18■□□□□ 0.34
SYNE1-226ENST00000488376 FPGT-TNNI3KV9GXZ4 949 aa17.18■□□□□ 0.34
SYNE1-226ENST00000488376 PAPPA2Q9BXP8 1791 aa17.17■□□□□ 0.34
SYNE1-226ENST00000488376 TCP10L2B9ZVM9 353 aa17.17■□□□□ 0.34
SYNE1-226ENST00000488376 MYO1BO43795 1136 aa17.17■□□□□ 0.34
SYNE1-226ENST00000488376 ECE1P42892 770 aa17.17■□□□□ 0.34
SYNE1-226ENST00000488376 RASA3Q14644 834 aa17.17■□□□□ 0.34
SYNE1-226ENST00000488376 RGMBQ6NW40 437 aa17.17■□□□□ 0.34
SYNE1-226ENST00000488376 WBP1LQ9NX94 342 aa17.17■□□□□ 0.34
SYNE1-226ENST00000488376 HMG20BQ9P0W2 317 aa17.17■□□□□ 0.34
SYNE1-226ENST00000488376 SEMA3EO15041 775 aa17.16■□□□□ 0.34
SYNE1-226ENST00000488376 HDLBPQ00341 1268 aaKnown RBP17.16■□□□□ 0.34
SYNE1-226ENST00000488376 PDE3AQ14432 1141 aa17.16■□□□□ 0.34
SYNE1-226ENST00000488376 NBPF12Q5TAG4 269 aaPredicted RBP17.16■□□□□ 0.34
SYNE1-226ENST00000488376 ZDHHC15Q96MV8 337 aa17.16■□□□□ 0.34
SYNE1-226ENST00000488376 SUGT1Q9Y2Z0 365 aa17.16■□□□□ 0.34
SYNE1-226ENST00000488376 DAGLAQ9Y4D2 1042 aa17.16■□□□□ 0.34
SYNE1-226ENST00000488376 ECM29Q5VYK3 1845 aa17.16■□□□□ 0.34
SYNE1-226ENST00000488376 SALL1Q9NSC2 1324 aa17.16■□□□□ 0.34
SYNE1-226ENST00000488376 MYH13Q9UKX3 1938 aa17.15■□□□□ 0.34
SYNE1-226ENST00000488376 LDHBP07195 334 aaKnown RBP17.15■□□□□ 0.34
SYNE1-226ENST00000488376 MCAMP43121 646 aa17.15■□□□□ 0.34
SYNE1-226ENST00000488376 ZNF157P51786 506 aaPredicted RBP17.15■□□□□ 0.34
SYNE1-226ENST00000488376 TTLL12Q14166 644 aaPredicted RBP17.15■□□□□ 0.34
SYNE1-226ENST00000488376 GORABQ5T7V8 394 aa17.15■□□□□ 0.34
SYNE1-226ENST00000488376 TBC1D9Q6ZT07 1266 aa17.15■□□□□ 0.34
SYNE1-226ENST00000488376 ZNF384Q8TF68 577 aa17.15■□□□□ 0.34
SYNE1-226ENST00000488376 EAF2Q96CJ1 260 aaPredicted RBP17.15■□□□□ 0.34
SYNE1-226ENST00000488376 TEPSINQ96N21 525 aa17.15■□□□□ 0.34
SYNE1-226ENST00000488376 TMEM39BQ9GZU3 492 aa17.15■□□□□ 0.34
SYNE1-226ENST00000488376 ZBTB22O15209 634 aa17.14■□□□□ 0.33
SYNE1-226ENST00000488376 ARID4AP29374 1257 aaPredicted RBP17.14■□□□□ 0.33
SYNE1-226ENST00000488376 FKBP1BP68106 108 aa17.14■□□□□ 0.33
SYNE1-226ENST00000488376 COL13A1Q5TAT6 717 aaPredicted RBP17.14■□□□□ 0.33
SYNE1-226ENST00000488376 HHIPL2Q6UWX4 724 aa17.14■□□□□ 0.33
SYNE1-226ENST00000488376 RASAL3Q86YV0 1011 aa17.14■□□□□ 0.33
SYNE1-226ENST00000488376 MRIQ9BWK5 157 aa17.14■□□□□ 0.33
SYNE1-226ENST00000488376 CCDC8Q9H0W5 538 aaPredicted RBP17.14■□□□□ 0.33
SYNE1-226ENST00000488376 GPR108Q9NPR9 543 aa17.14■□□□□ 0.33
SYNE1-226ENST00000488376 SNRKQ9NRH2 765 aa17.14■□□□□ 0.33
SYNE1-226ENST00000488376 ABCF2Q9UG63 623 aa17.14■□□□□ 0.33
SYNE1-226ENST00000488376 DBNLQ9UJU6 430 aaKnown RBP17.14■□□□□ 0.33
SYNE1-226ENST00000488376 MAST3O60307 1309 aa17.14■□□□□ 0.33
SYNE1-226ENST00000488376 APBB1O00213 710 aa17.13■□□□□ 0.33
SYNE1-226ENST00000488376 SLC10A3P09131 477 aa17.13■□□□□ 0.33
SYNE1-226ENST00000488376 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.13■□□□□ 0.33
SYNE1-226ENST00000488376 SPATA5Q8NB90 893 aa17.13■□□□□ 0.33
SYNE1-226ENST00000488376 PPP2R3BQ9Y5P8 575 aa17.13■□□□□ 0.33
SYNE1-226ENST00000488376 PDS5AQ29RF7 1337 aaKnown RBP17.13■□□□□ 0.33
SYNE1-226ENST00000488376 NF2P35240 595 aa17.12■□□□□ 0.33
SYNE1-226ENST00000488376 MAP2K2P36507 400 aa17.12■□□□□ 0.33
SYNE1-226ENST00000488376 CDC42EP5Q6NZY7 148 aa17.12■□□□□ 0.33
SYNE1-226ENST00000488376 RPAP2Q8IXW5 612 aaPredicted RBP17.12■□□□□ 0.33
SYNE1-226ENST00000488376 CLMNQ96JQ2 1002 aa17.12■□□□□ 0.33
SYNE1-226ENST00000488376 IL1RAPL2Q9NP60 686 aa17.12■□□□□ 0.33
SYNE1-226ENST00000488376 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.12■□□□□ 0.33
SYNE1-226ENST00000488376 TSKSQ9UJT2 592 aa17.12■□□□□ 0.33
SYNE1-226ENST00000488376 ANGEL1Q9UNK9 670 aaKnown RBP17.12■□□□□ 0.33
SYNE1-226ENST00000488376 RRP1P56182 461 aaKnown RBP17.11■□□□□ 0.33
SYNE1-226ENST00000488376 KIF23Q02241 960 aaPredicted RBP17.11■□□□□ 0.33
SYNE1-226ENST00000488376 NFIAQ12857 509 aa17.11■□□□□ 0.33
SYNE1-226ENST00000488376 MKRN3Q13064 507 aaKnown RBP17.11■□□□□ 0.33
SYNE1-226ENST00000488376 NOGQ13253 232 aa17.11■□□□□ 0.33
SYNE1-226ENST00000488376 MAP2K1Q02750 393 aaPredicted RBP17.1■□□□□ 0.33
SYNE1-226ENST00000488376 MECOMQ03112 1051 aa17.1■□□□□ 0.33
SYNE1-226ENST00000488376 TNFAIP1Q13829 316 aa17.1■□□□□ 0.33
SYNE1-226ENST00000488376 TTC39AQ5SRH9 613 aa17.1■□□□□ 0.33
SYNE1-226ENST00000488376 LDLRAD1Q5T700 205 aa17.1■□□□□ 0.33
SYNE1-226ENST00000488376 RHPN1Q8TCX5 695 aa17.1■□□□□ 0.33
SYNE1-226ENST00000488376 CCDC102AQ96A19 550 aa17.1■□□□□ 0.33
SYNE1-226ENST00000488376 BCL11AQ9H165 835 aa17.1■□□□□ 0.33
SYNE1-226ENST00000488376 NDUFB9Q9Y6M9 179 aa17.1■□□□□ 0.33
SYNE1-226ENST00000488376 USP2O75604 605 aaPredicted RBP17.09■□□□□ 0.33
SYNE1-226ENST00000488376 UQCRFS1P1P0C7P4 283 aa17.09■□□□□ 0.33
SYNE1-226ENST00000488376 HSPA8P11142 646 aaKnown RBP17.09■□□□□ 0.33
SYNE1-226ENST00000488376 ARMC9Q7Z3E5 817 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms